mRNA_Ecto-sp13_S_contig91198.20677.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig91198.20677.1
Unique NamemRNA_Ecto-sp13_S_contig91198.20677.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig91198.20677.1 vs. uniprot
Match: D8LIL7_ECTSI (Protein phosphatase 1, regulatory subunit, and related proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL7_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.300e-16
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 QGNPVCREVEYRFTVLAYIKNIAYHDYGTVDPAEVLQVR 117
            +GNPVCREVEYRFTVLAYIKNI YHDYGTVDPAEVLQ +
Sbjct:  168 EGNPVCREVEYRFTVLAYIKNITYHDYGTVDPAEVLQAK 206
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BLAST of mRNA_Ecto-sp13_S_contig91198.20677.1 vs. uniprot
Match: A0A835Z751_9STRA (Protein phosphatase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z751_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.560e-9
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 QGNPVCREVEYRFTVLAYIKNIAYHDYGTVDPAEVLQVR 117
            +GNPVC+E +YRFT LAY+K + +HDY  VDP+EV Q R
Sbjct:  170 EGNPVCKEADYRFTALAYLKAMKFHDYTMVDPSEVEQAR 208
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BLAST of mRNA_Ecto-sp13_S_contig91198.20677.1 vs. uniprot
Match: A0A7S2UTU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTU5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.790e-9
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 QGNPVCREVEYRFTVLAYIKNIAYHDYGTVDPAEVLQVR 117
            +GNPVCRE EYR T LAY++ + Y DY  VDPAEV Q R
Sbjct:   42 EGNPVCREPEYRATALAYVETLKYFDYAMVDPAEVTQSR 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig91198.20677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIL7_ECTSI2.300e-1689.74Protein phosphatase 1, regulatory subunit, and rel... [more]
A0A835Z751_9STRA3.560e-961.54Protein phosphatase 1 n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2UTU5_9STRA4.790e-964.10Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig91198contigEcto-sp13_S_contig91198:120..260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score82.0
Seed ortholog evalue8e-14
Seed eggNOG ortholog2880.D8LIL7
Preferred namelrrc48
Model size141
KEGG koko:K11092,ko:K19753
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001539,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0008150,GO:0009987,GO:0032838,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0060285,GO:0097014,GO:0099568,GO:0120025,GO:0120038
Exons1
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Cds size141
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464183.4509306-CDS-Ecto-sp13_S_contig91198:119..2601681464183.4509306-CDS-Ecto-sp13_S_contig91198:119..260Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig91198 120..260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig91198.20677.1prot_Ecto-sp13_S_contig91198.20677.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig91198 120..260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig91198.20677.1

>prot_Ecto-sp13_S_contig91198.20677.1 ID=prot_Ecto-sp13_S_contig91198.20677.1|Name=mRNA_Ecto-sp13_S_contig91198.20677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
QGNPVCREVEYRFTVLAYIKNIAYHDYGTVDPAEVLQVRWCAANFH*
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mRNA from alignment at Ecto-sp13_S_contig91198:120..260-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig91198.20677.1 ID=mRNA_Ecto-sp13_S_contig91198.20677.1|Name=mRNA_Ecto-sp13_S_contig91198.20677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91198:120..260- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGTAATCCGGTGTGCCGGGAGGTCGAGTACCGCTTTACCGTCCTGGC
GTACATCAAGAACATTGCATACCACGACTACGGCACTGTCGACCCCGCCG
AGGTCTTACAGGTGCGATGGTGTGCTGCGAACTTTCATTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig91198:120..260-

>mRNA_Ecto-sp13_S_contig91198.20677.1 ID=mRNA_Ecto-sp13_S_contig91198.20677.1|Name=mRNA_Ecto-sp13_S_contig91198.20677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91198:120..260- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGTAATCCGGTGTGCCGGGAGGTCGAGTACCGCTTTACCGTCCTGGC
GTACATCAAGAACATTGCATACCACGACTACGGCACTGTCGACCCCGCCG
AGGTCTTACAGGTGCGATGGTGTGCTGCGAACTTTCATTAG
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