mRNA_Ecto-sp13_S_contig9098.20649.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9098.20649.1
Unique NamemRNA_Ecto-sp13_S_contig9098.20649.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9098.20649.1 vs. uniprot
Match: D8LKN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN4_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 2.790e-64
Identity = 236/290 (81.38%), Postives = 238/290 (82.07%), Query Frame = 1 
Query:   10 ASLEGRLEEAVEETSRLRQELTVAISGSTASQEGAAEAVAKAEGERAALEAQVAGQKDKLKKAAARLRSLKEERDAASEKVASTAALLETSEKKLADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNATSRLREAEDLLRSTSEESMVLRQGLEERCQRLEESAARAPALEADLAAERSSRREXXXXXXXXXXXXXXXXXXXXXTARESEEIMGALQGQVDAANKERDTAVAGLEAAEQEKESSKTRLKDLFAKYKAVQAVRGRERV 879
            ASLEGRLEEA EETSRLRQELT AISGSTASQEGAAEAVAKAEGERAALE QVAGQKDKLKKAAARLRSLKEERDAA+EKVA T+ALLETSEK LAD    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   SRLREAEDLLRSTSEESMVLRQGLEERCQRLEESAARAPALEADLAAERS RRE XXXXXXXXXXXXXXXXXXXX                                     ESSKTRLKDLFAKYKAVQAVRGRE V
Sbjct:  757 ASLEGRLEEAAEETSRLRQELTAAISGSTASQEGAAEAVAKAEGERAALEEQVAGQKDKLKKAAARLRSLKEERDAATEKVAFTSALLETSEKNLADAEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLREAEDLLRSTSEESMVLRQGLEERCQRLEESAARAPALEADLAAERSGRRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESSKTRLKDLFAKYKAVQAVRGRESV 1046
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BLAST of mRNA_Ecto-sp13_S_contig9098.20649.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 1.260e-62
Identity = 222/282 (78.72%), Postives = 224/282 (79.43%), Query Frame = 1 
Query:   10 ASLEGRLEEAVEETSRLRQELTVAISGSTASQEGAAEAVAKAEGERAALEAQVAGQKDKLKKAAARLRSLKEERDAASEKVASTAALLETSEKKLADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNATSRLREAEDLLRSTSEESMVLRQGLEERCQRLEESAARAPALEADLAAERSSRREXXXXXXXXXXXXXXXXXXXXXTARESEEIMGALQGQVDAANKERDTAVAGLEAAEQEKESSKTRLKDLFAKYKAVQ 855
            ASLEGRL            ELT AISGSTASQEGAAEAVAKAEGERAALE QVAGQKDKLKKAAARLRSLKEERDAA+EKVASTAALLETSEK LAD              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAT RLREAEDLLRSTSEESMVLR+GLEERCQRLEESAARAPALEADLAAERS RRE XXXXXXXXXXXXXXXXXXXX        MGALQGQVDAAN                  SSKTRLKDLFAKYKAVQ
Sbjct:  810 ASLEGRLXXXXXXXXXXXXELTAAISGSTASQEGAAEAVAKAEGERAALEEQVAGQKDKLKKAAARLRSLKEERDAATEKVASTAALLETSEKNLADAEARSRSLEEAIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNATCRLREAEDLLRSTSEESMVLRRGLEERCQRLEESAARAPALEADLAAERSGRRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGALQGQVDAANXXXXXXXXXXXXXXXXXXSSKTRLKDLFAKYKAVQ 1091
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9098.20649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKN4_ECTSI2.790e-6481.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSR4_9PHAE1.260e-6278.72GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9098contigEcto-sp13_S_contig9098:2109..6277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size879
Hectar predicted targeting categoryother localisation
Exons6
Cds size879
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9098.20649.1prot_Ecto-sp13_S_contig9098.20649.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9098 2109..6277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464181.3029828-CDS-Ecto-sp13_S_contig9098:2108..22341681464181.3029828-CDS-Ecto-sp13_S_contig9098:2108..2234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9098 2109..2234 -
1681464181.3140097-CDS-Ecto-sp13_S_contig9098:3219..34061681464181.3140097-CDS-Ecto-sp13_S_contig9098:3219..3406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9098 3220..3406 -
1681464181.3250358-CDS-Ecto-sp13_S_contig9098:3977..40931681464181.3250358-CDS-Ecto-sp13_S_contig9098:3977..4093Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9098 3978..4093 -
1681464181.3376555-CDS-Ecto-sp13_S_contig9098:4743..49681681464181.3376555-CDS-Ecto-sp13_S_contig9098:4743..4968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9098 4744..4968 -
1681464181.3492668-CDS-Ecto-sp13_S_contig9098:5255..53421681464181.3492668-CDS-Ecto-sp13_S_contig9098:5255..5342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9098 5256..5342 -
1681464181.3618097-CDS-Ecto-sp13_S_contig9098:6139..62771681464181.3618097-CDS-Ecto-sp13_S_contig9098:6139..6277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9098 6140..6277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9098.20649.1

>prot_Ecto-sp13_S_contig9098.20649.1 ID=prot_Ecto-sp13_S_contig9098.20649.1|Name=mRNA_Ecto-sp13_S_contig9098.20649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
MFQASLEGRLEEAVEETSRLRQELTVAISGSTASQEGAAEAVAKAEGERA
ALEAQVAGQKDKLKKAAARLRSLKEERDAASEKVASTAALLETSEKKLAD
AEARSRSLEEAAGGEEQAAAAAVRDAEGRAAASAEALAALEQEASGLREE
LANATSRLREAEDLLRSTSEESMVLRQGLEERCQRLEESAARAPALEADL
AAERSSRRELEVELESLKAGARELESLKEGTARESEEIMGALQGQVDAAN
KERDTAVAGLEAAEQEKESSKTRLKDLFAKYKAVQAVRGRERV
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mRNA from alignment at Ecto-sp13_S_contig9098:2109..6277-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9098.20649.1 ID=mRNA_Ecto-sp13_S_contig9098.20649.1|Name=mRNA_Ecto-sp13_S_contig9098.20649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4169bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9098:2109..6277- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCAGGCCTCGCTGGAAGGTCGCCTGGAGGAGGCTGTTGAGGAGAC
TAGCCGCTTGCGTCAAGAGCTGACCGTGGCGATATCGGGGTCGACAGCGT
CTCAAGAGGGAGCCGCCGAGGCCGTGGCTAAGGCGGAGGTATGTCAGCTC
AGTCCGGGCCGAGAGAGAGGGAGAGAGAGAGAGCGACAGAAAGACGGACA
GACAGACACAGACAGACAGACAGAGACAGAGAGAGGCAGATGGAGAAAGA
GAGAGAGAGACAAACAGCGGAGGGGGGGGATATATCTGTTTCGAAAATGG
TCCGGTGTCGTGAGGTTGCATGTTTTGGTCTCGAGAGGGCGCCACACACC
CTGAGAAGAACAGATTCCATGTCGAGGCAAGGCGTTTGAGATCGCTCAAG
GGGTTGCGTATAAACATCTGCTATAACCAGCCCTCGTCACTCTACCCTAA
ATCGGCGTCTTGTCTCTGGCGCTGAAGCGTCGTTAGCTCTGCTGTAGGGC
AGGACCCGTCATCAAGCCTCGCCGCACGTAGCAGGTCAATTCAGTCAGGT
CAGCGTTCCCTTTTTTCGACGAGTGGGCCGGCTACGGTTGTACCGAAACC
ATCGCCGCATCGCGGTCTTGTGGCAAGGGATGACAGCCTTGCCGTGCTAC
CACTCCGTTGAGATATACCTGCGGCCGATGCCAGTCACTGCTGGCATCGC
TGGTGCGTCTTCGTCCGTTATTTTGATGATGATGATGATGATGATGATGA
TGCATTTGGTTGAATGTCGTTTTTTTTTGCTTGCTTGTTGTTTTCACCTT
ATTTTGTCGATGACGCCGTGGTTGACAATCGAAGCTCGTTGCTTGTTGTA
TTTACGTTTTTTTGTCCATGACGTGGTGGGTGACAATTGGTGTGTTTTTT
TTTTTATCTTGCGTCTCGGCGGAAACTCCGTGAAGGGGGAGCGTGCCGCG
CTGGAGGCGCAGGTGGCCGGTCAGAAGGACAAGCTCAAGAAGGCGGCGGC
AAGGCTTCGGTCTCTCAAGGAGGTGAGGAAAGGCGAAAGGGGCGCGCCGC
GTGGATGGATGCTCGCTTTCCGGGTACCAACGTTGTGATGATGGCCCCTG
TCATCATGGTCATTGTTGTTATTCTCGTCGTTTGCCGTTGCCGTTTTGGG
GTGCCTTTCAAGCGCAAGCACGTTTCGTTTGGTAGCTGCTTCGAAACCCT
AAGCCCCCCCCGCCTCCTCCGTCCCATTCCCATCCACGCCCATCTCGCCC
TCTTTCACCTCATCCCGGCATCGGCAAACGAAACCGAACAAAATCAAATC
GAATCTCAGGAACGAGATGCCGCCTCTGAGAAGGTGGCCTCCACGGCGGC
TCTCCTGGAAACTTCCGAGAAAAAGCTGGCGGACGCCGAGGCGCGCAGCC
GCTCCCTCGAGGAGGCTGCTGGGGGCGAGGAACAGGCGGCGGCGGCGGCT
GTGCGAGATGCGGAGGGGAGGGCGGCGGCCTCTGCGGAGGCTTTGGCCGC
GCTGGAGCAAGAGGCCTCGGGGCTTCGCGAGGAGGTGTGCATGTGTGTGT
GTACTTATTATCAGCATCGACCGCGCTAACCGGCTGACCAATGAAAATAC
GTCAGTCTCAGTGCGGTTGTGTGTGTGTGGCTGGCGGGCTCTCTGGCTGG
CTGGCTGGCCGGCTGGCTGGCTGGCCCGCTGGCTGGCCGACTTTTGGTCT
TGTCCGTCTGCCTGTCTGCCTGTCTTTCTTTTCTTTCTGGCTGGCTGTTG
GCCTGTCTTGTTGTGTGTTGTGGTGCATGCCACCTTTGTGTGTTACATGC
TTGCGTGCTCCGCAACGCCGTGTTATGGCACCACAGCTGTTTTTTCGCGG
CACGTCCGTCTGTGCGGCGGGCTTTCTTCTGTGTTCCAGCAGCAAGAGGC
TCATCGTCCTGTGGTAAGGGAGCAAGCAGCAAGCATCGCTACCTCCATCT
CGCTCACGAACCTCTCGACCAACACTTGCCTTCCCCCCCCTACTTGTTAC
GCACGGATGACGATGACCAGGTTCTGTTCTGTCCTGGTGAAATGTAGCCT
GGGCCGGCATGTCGCTCCGTCCCTGCAACGCGAGGTTAAAGTTCTAGACT
AACGACTGCGCCATGCGTTTACATTACTACACCCCCCCCTGATTCCGTGT
GTGCTGTGCCTCCTCCCGCGCGCGCATCTCGCAGCTGGCAAACGCCACCT
CTCGCCTTCGAGAGGCAGAGGACCTGTTGCGAAGCACCTCCGAGGAGTCG
ATGGTCCTCAGGCAGGGACTGGAGGAGCGGTGCCAGCGACTCGAGGAGAG
GTGATATGGATACTATACTTGTACGACTCTCGCTTTTTTTCTACCCGGGT
GGTCTTGGCTGCTGTTGTGATAGCCTTTTTTACGGTTGTTCATTTTTCCG
CGGAACGTTCCACGCACTAGGTCTGCCCGGGGGGGGTTCTGGCATTTTTG
TCTGGGCCAACGGCGACAGGTTACTCTGATATTTAGTAATTTGCTACATT
ATTAGTACCAATAGCACGATATTGGCGTCTTCTTTTTTGGTGCGTACAGG
CGGTCATCGGAGTCCCGCTGCACGGAGATTGAATAAATCCCGTCCGCTTT
GCTTGCTCGCCCTGCCTGCGTAGAAGAACACCGCGCTGTCAGCCTCCTGC
TTAGTCGCCGACTTGCTTGTGGCCACCGCACAATAGAAACACAGCAGAAG
AAATCGCGGCCACTGCTGCAAAGTTCCTTGGCACTTGTCCCCGCCCCTTT
TTGCTTGTCTGTCGCGGTCACCCTCGCACGCGCCCCGTGAATCACGAACA
GCCCTCCCCCCCCCCCTACCGTCCGGTCCCCTTCGCCGCGGGTCGTAATC
ACGATCGGCGGCTGCTGTTAGCGCTGCGCGAGCACCCGCCCTAGAGGCCG
ACCTAGCGGCTGAGCGCTCCAGTCGGAGGGAGCTCGAGGTGGAGCTGGAG
AGCCTGAAGGCGGGGGCCAGGGAACTGGAGAGCCTCAAGGAAGGCACTGC
GAGGGAGAGCGAGGAGATCATGGGGGCCCTTCAGGGGCAGGTGGACGCTG
CCAACAAGGTGCTGTGTGTGTTGGGGGGGGGGGGGGGGGTTGATTATTAG
CATCGACCGCGCGAAGCGGCTGACCGATGAAGAGACTTCAGTCTCAGTGC
GATGTGGGTGTGTTTGTGTGTGCTCATGTTTTTCAAGCTGTTGGACTAAT
GACCGCGCGACCTCGGGAGGACTAATATTTGTTCCTACAGGATCGATAGG
TCTTAGGCGGAGGGAGGGTTGTTCCGATTGAGTGGCCCCCTCTTCCGGCC
ACGGCTGCGCTGCTGATTTTGGTGGTACTGCTGTACAGATGGGCTTTTGG
TTCGGGACGGATCTGTCTTTCCTGGGTGTTTATTTTGGGGGTATAGCGGA
AGCGTTTGGAACTGTAATGAGATTCGACCTCCTCGGAACTTAGAATCAAT
CACCTGAGAGCTGCATGGAACTCTTGTCCGACCACAGATGCAGTTTGTTG
TTGCTTTTCCCTTGTTGTTCTCTCCTTTTGGTCGTGCTCTCCTTGCTGTC
TTCCAACATGAACCCAGCCAAACGCACACAGATCCCAAGCGCACACGAAC
GCATCCGATCGCATACACATACGGTGTTTTCCACCGTACTGAGACTAACC
CTAACCCTAGCCGGTTGGCGCGGTAGGTACTAACAAAAATGACACAGCAC
ACATACGGAACAGACAGGCACATGCCTCGGCGTAAAGTCGCGAATCTTGC
TCACGACGTCACGTCATGTAACGTCTGATGACGCCAATATCGTGGTCAAG
CACGATGACATGTCTGCCTCCAAGTACCATACCATAACGTAACATACATG
GGGCCCCTTTTTGGTTCTTCCAGTAGACACACCAGGTGCTGGGGGCAAAA
GCGAAAAAGGACGAAGTACACATTCCCTACGGGGTGACTTTATTTCGACG
CTCTTGTTCTTGTTGCTGTCATACCGGGTTTGGTTGCTGGTTTTGTTATC
CTTACTCTCCCCCGTGCGTTTGTCCGGTGGTTCTGCCTGGCAGGAGCGCG
ACACGGCTGTTGCCGGGCTCGAAGCGGCGGAGCAAGAGAAGGAGAGCAGC
AAGACAAGGCTCAAGGATCTCTTCGCCAAGTACAAGGCCGTGCAAGCGGT
GAGAGGGAGAGAGAGAGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9098:2109..6277-

>mRNA_Ecto-sp13_S_contig9098.20649.1 ID=mRNA_Ecto-sp13_S_contig9098.20649.1|Name=mRNA_Ecto-sp13_S_contig9098.20649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9098:2109..6277- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCAGGCCTCGCTGGAAGGTCGCCTGGAGGAGGCTGTTGAGGAGAC
TAGCCGCTTGCGTCAAGAGCTGACCGTGGCGATATCGGGGTCGACAGCGT
CTCAAGAGGGAGCCGCCGAGGCCGTGGCTAAGGCGGAGGGGGAGCGTGCC
GCGCTGGAGGCGCAGGTGGCCGGTCAGAAGGACAAGCTCAAGAAGGCGGC
GGCAAGGCTTCGGTCTCTCAAGGAGGAACGAGATGCCGCCTCTGAGAAGG
TGGCCTCCACGGCGGCTCTCCTGGAAACTTCCGAGAAAAAGCTGGCGGAC
GCCGAGGCGCGCAGCCGCTCCCTCGAGGAGGCTGCTGGGGGCGAGGAACA
GGCGGCGGCGGCGGCTGTGCGAGATGCGGAGGGGAGGGCGGCGGCCTCTG
CGGAGGCTTTGGCCGCGCTGGAGCAAGAGGCCTCGGGGCTTCGCGAGGAG
CTGGCAAACGCCACCTCTCGCCTTCGAGAGGCAGAGGACCTGTTGCGAAG
CACCTCCGAGGAGTCGATGGTCCTCAGGCAGGGACTGGAGGAGCGGTGCC
AGCGACTCGAGGAGAGCGCTGCGCGAGCACCCGCCCTAGAGGCCGACCTA
GCGGCTGAGCGCTCCAGTCGGAGGGAGCTCGAGGTGGAGCTGGAGAGCCT
GAAGGCGGGGGCCAGGGAACTGGAGAGCCTCAAGGAAGGCACTGCGAGGG
AGAGCGAGGAGATCATGGGGGCCCTTCAGGGGCAGGTGGACGCTGCCAAC
AAGGAGCGCGACACGGCTGTTGCCGGGCTCGAAGCGGCGGAGCAAGAGAA
GGAGAGCAGCAAGACAAGGCTCAAGGATCTCTTCGCCAAGTACAAGGCCG
TGCAAGCGGTGAGAGGGAGAGAGAGAGTG
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