mRNA_Ecto-sp13_S_contig9062.20624.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9062.20624.1 vs. uniprot
Match: D7FP97_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP97_ECTSI) HSP 1 Score: 257 bits (656), Expect = 6.110e-78 Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 3
Query: 375 TDADAKGFGGRAAYFAFACALFLFTSLEALPIFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAGFPFQILAIFMTLLEGNAFATFVSGAAPDPLTGNGLGTALLAFMFLF 773
TDADAKGFGGRAAYFAFACALFLFTSLEALPIFMEERSIYTREHSRGAYRV+SYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAGFPFQILAIFMTLLEGNAFATFVSG+APDPLTGNGLGTALLAFMFLF
Sbjct: 434 TDADAKGFGGRAAYFAFACALFLFTSLEALPIFMEERSIYTREHSRGAYRVMSYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAGFPFQILAIFMTLLEGNAFATFVSGSAPDPLTGNGLGTALLAFMFLF 566
BLAST of mRNA_Ecto-sp13_S_contig9062.20624.1 vs. uniprot
Match: A0A6H5K8I5_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I5_9PHAE) HSP 1 Score: 221 bits (563), Expect = 2.160e-66 Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 1
Query: 1 FVSPSTKVYFGRPADLPAYCTGLGKTPPAYSNIGEFFLEVVDEYETADNVKALADRHHEAVRMRAPSTAGAEADALDDTGYDFANPMVKEIIILLRRQWINVVRTPELAVVRVVMCSVVAL 363
F+S VYFGRPADLPAYCTGLGKTPPAYSNIGEFFLEVVDEYETADNVKALAD HHEAVRMRAPSTAG EADAL+DTGYD+ANPM+ EIIILLRRQWINVVRTPELAVVRVVMCSVVAL
Sbjct: 288 FLSRGRVVYFGRPADLPAYCTGLGKTPPAYSNIGEFFLEVVDEYETADNVKALADSHHEAVRMRAPSTAGVEADALEDTGYDYANPMLNEIIILLRRQWINVVRTPELAVVRVVMCSVVAL 408
BLAST of mRNA_Ecto-sp13_S_contig9062.20624.1 vs. uniprot
Match: A0A835ZIY6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY6_9STRA) HSP 1 Score: 135 bits (341), Expect = 7.380e-33 Identity = 72/130 (55.38%), Postives = 91/130 (70.00%), Query Frame = 3
Query: 390 KGFGGRAAYFAFACALFLFTSLEALPIFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPP--AGFPFQILAIFMTLLEGNAFATFVSGAAPDPLTGNGLGTALLAFMFLF 773
+G G A Y AF A F+FTSLEALPIF+ ERS++ RE RGAYR+ S+++ N ++ LP M++ FT+IS+FM+ L A F FQ++ IF L GN FATFVSG PD LTGN GTA+LAFMFLF
Sbjct: 401 EGIGQLAGYSAFVEAFFIFTSLEALPIFLNERSVFAREQGRGAYRLSSFVMANSVVMLPFFFAMALVFTSISFFMVGLSSDNANFIFQVILIFTVLTAGNGFATFVSGIVPDALTGNSAGTAVLAFMFLF 530
BLAST of mRNA_Ecto-sp13_S_contig9062.20624.1 vs. uniprot
Match: A0A835YQT3_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT3_9STRA) HSP 1 Score: 133 bits (334), Expect = 5.080e-32 Identity = 68/133 (51.13%), Postives = 95/133 (71.43%), Query Frame = 3
Query: 381 ADAKGFGGRAAYFAFACALFLFTSLEALPIFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAG--FPFQILAIFMTLLEGNAFATFVSGAAPDPLTGNGLGTALLAFMFLF 773
A +G A Y AF A F+FTSLEALPIF++ER I+ REH RGAYRV S++L N L+ LP + ++ ++AIS++M+ L G F +Q++ IF+ ++ N F+TF+SG PD LTGNG+GTA++AFMFLF
Sbjct: 354 ASEEGVAQLAGYIAFTEAFFIFTSLEALPIFLDERHIFAREHGRGAYRVSSFVLANTLVILPFLFLCALIYSAISFYMLGLANGGGNFIYQVVMIFVMVVAANGFSTFISGFVPDALTGNGMGTAIMAFMFLF 486
BLAST of mRNA_Ecto-sp13_S_contig9062.20624.1 vs. uniprot
Match: A0A6S9KQH8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KQH8_HETAK) HSP 1 Score: 128 bits (322), Expect = 2.980e-30 Identity = 63/124 (50.81%), Postives = 89/124 (71.77%), Query Frame = 3
Query: 408 AAYFAFACALFLFTSLEALPIFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAG--FPFQILAIFMTLLEGNAFATFVSGAAPDPLTGNGLGTALLAFMFLF 773
++Y +A A +LFTS+EA+PIF+ ER I+TRE+SRGAYR ISY+L L+++PV ++ + FT++S+FM+ LP F FQ+L + +T GN F T +SG PD LTGN +GTA+LA FLF
Sbjct: 408 SSYLIYALAFYLFTSMEAMPIFLNERDIFTRENSRGAYRSISYVLAGTLVFIPVTFILGLVFTSVSWFMVGLPNDANLFFFQVLTLLVTCFLGNCFCTLISGIVPDALTGNSMGTAMLANFFLF 531
BLAST of mRNA_Ecto-sp13_S_contig9062.20624.1 vs. uniprot
Match: A0A2K1L8H1_PHYPA (ABC transporter domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L8H1_PHYPA) HSP 1 Score: 111 bits (277), Expect = 3.710e-24 Identity = 62/131 (47.33%), Postives = 83/131 (63.36%), Query Frame = 3
Query: 387 AKGFGGRAAYFAFACALFLFTSLEALPIFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPP-AGFPFQ-ILAIFMTLLEGNAFATFVSGAAPDPLTGNGLGTALLAFMFLF 773
AKG R +F F ALF+FTS EALP+F+ ER I+ RE SRGAYRV +Y+L L+ LP V+++ F+ +SYFM+ L AG F + +F+TL NAF F++ PD GN L +AL A+ FLF
Sbjct: 400 AKGVDQRQGFFGFLLALFIFTSTEALPVFLNERQIFIRETSRGAYRVSAYVLSQALVILPFLFVLAMIFSCVSYFMVGLAKDAGAFFSFVFILFLTLAVANAFVAFMASFVPDMTAGNALSSALFAYFFLF 530
BLAST of mRNA_Ecto-sp13_S_contig9062.20624.1 vs. uniprot
Match: A0A388JK17_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JK17_CHABU) HSP 1 Score: 107 bits (267), Expect = 1.250e-23 Identity = 59/132 (44.70%), Postives = 86/132 (65.15%), Query Frame = 3
Query: 384 DAKGFGGRAAYFAFACALFLFTSLEALPIFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDL--PPAGFPFQILAIFMTLLEGNAFATFVSGAAPDPLTGNGLGTALLAFMFLF 773
D +G R ++FAFACAL LF+++ +PIF+ ER+I+ RE SRG+YR SY++ N L++LP V SV FT SYF++ L + + +F+T+ GN + TF+S PD + GN + TA+ AFMFLF
Sbjct: 153 DERGTFDRNSFFAFACALPLFSAINGVPIFLMERNIFMRETSRGSYRTSSYVVANGLVFLPFFFVQSVLFTLTSYFLVGLVHDASAVCLFTVTMFLTIALGNTYVTFLSSLVPDFVAGNTIITAVTAFMFLF 284
BLAST of mRNA_Ecto-sp13_S_contig9062.20624.1 vs. uniprot
Match: A0A2R6XAD8_MARPO (ABC transporter domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XAD8_MARPO) HSP 1 Score: 105 bits (262), Expect = 4.010e-22 Identity = 54/130 (41.54%), Postives = 86/130 (66.15%), Query Frame = 3
Query: 390 KGFGGRAAYFAFACALFLFTSLEALPIFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDL--PPAGFPFQILAIFMTLLEGNAFATFVSGAAPDPLTGNGLGTALLAFMFLF 773
KG R ++ +F AL +FTS+EA+ IF+EER I+ RE SRGAYR +Y++ ++ +P +++++ F+ ISY+++ L P F F L +F+ LL N+F +FVSG P+ GN L +A++A+ FLF
Sbjct: 466 KGARQRVSFISFTLALLIFTSVEAMGIFLEERQIFIRETSRGAYRAATYVISGAIVIIPFLMILAIVFSTISYWLVGLVAEPGPFFFFTLTVFLVLLVANSFVSFVSGLVPNFTVGNSLCSAVIAYFFLF 595
BLAST of mRNA_Ecto-sp13_S_contig9062.20624.1 vs. uniprot
Match: A0A388LU61_CHABU (ABC transporter domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LU61_CHABU) HSP 1 Score: 103 bits (257), Expect = 1.720e-21 Identity = 55/133 (41.35%), Postives = 82/133 (61.65%), Query Frame = 3
Query: 381 ADAKGFGGRAAYFAFACALFLFTSLEALPIFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDL--PPAGFPFQILAIFMTLLEGNAFATFVSGAAPDPLTGNGLGTALLAFMFLF 773
+D +G R ++FAF+CAL LF+ + ALP F+ ER+I RE SRGAYR SY++ N +++LP + ++ FT SYF++ L F + +F+T+ GN F TF+S PD + G + A+ FMFLF
Sbjct: 393 SDERGIFHRTSFFAFSCALLLFSCISALPFFLLERNIVMRETSRGAYRTFSYVVANGVVFLPFFFIQALLFTLASYFLVGLVRDTGAFFLFVTTMFLTITVGNTFVTFLSTLVPDFVAGTTIIAAVTTFMFLF 525
BLAST of mRNA_Ecto-sp13_S_contig9062.20624.1 vs. uniprot
Match: A0A1Y1HLV4_KLENI (ABC transporter G family n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HLV4_KLENI) HSP 1 Score: 102 bits (255), Expect = 3.210e-21 Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = 3
Query: 393 GFGGRAAYFAFACALFLFTSLEALPIFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPP--AGFPFQILAIFMTLLEGNAFATFVSGAAPDPLTGNGLGTALLAFMFLF 773
G RA+Y AFA AL LFTS EALPIF+ E+ I+ RE SRGAYR +Y + + +I+LP V+++ F+ +SY+MI + + F F + +F+ L N+F F S P+ +TGN + TA A+ FLF
Sbjct: 396 GIQARASYIAFALALLLFTSTEALPIFLAEKQIFIRETSRGAYRTSAYSISSAIIFLPFFFVLALIFSCVSYWMIGMAAEASSFFFFVFTLFLVLSVANSFVVFWSALVPNFITGNTIITAFTAYFFLF 524 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9062.20624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9062.20624.1 >prot_Ecto-sp13_S_contig9062.20624.1 ID=prot_Ecto-sp13_S_contig9062.20624.1|Name=mRNA_Ecto-sp13_S_contig9062.20624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp MRAPSTAGAEADALDDTGYDFANPMVKEIIILLRRQWINVVRTPELAVVRback to top mRNA from alignment at Ecto-sp13_S_contig9062:408..6522+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9062.20624.1 ID=mRNA_Ecto-sp13_S_contig9062.20624.1|Name=mRNA_Ecto-sp13_S_contig9062.20624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6115bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9062:408..6522+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9062:408..6522+ >mRNA_Ecto-sp13_S_contig9062.20624.1 ID=mRNA_Ecto-sp13_S_contig9062.20624.1|Name=mRNA_Ecto-sp13_S_contig9062.20624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9062:408..6522+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |