mRNA_Ecto-sp13_S_contig906.20616.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig906.20616.1
Unique NamemRNA_Ecto-sp13_S_contig906.20616.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig906.20616.1 vs. uniprot
Match: D7FWW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW0_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 2.680e-127
Identity = 246/285 (86.32%), Postives = 250/285 (87.72%), Query Frame = 2 
Query:   26 MPGLVDQDYASQHPQSQAPLDSNGPQQSIYRSSVASAEGERVPMLPGXXXXXXXXXXXXXXXXXXXRGTPGQGEEEDDGSGXXXXXXXXSAGKTMDASAEGAAAEGDFGDGDMVSG-LSDRSGRSTFQRSRDQGDHASDIHPGEGADEYVIRRSGSGNRPARSSNGTANGTGXXXXXXXXXXXXXXXXXXXXXXXXXXED---LDMPELATPRDGEDGDMSFYDGNSRLEEEVVDNFADIPTPAPRGAGARGSGAVAGADGRTFRTQRSNSSEGWVDQYTSSSLV 868
            MPGLVDQDYASQHPQSQAPLDSNGP QSIYRSSVASAEGERVPMLPG                   RGTPG GEE+DDGS XXXXXXXXSAGKTMDASAEGAAAEG FGDGDMVSG +SDRSGRST QRSRDQGDHASDIHPGEGADEY IRRSGSGNRP R SNG ANGTGXXXXXXXXXXXXXXXXXXXXXXXXXX     +D+PELATPRDGEDGDMSFYDGNSRLEEEVVDNFADIPTPAPRGAG RGSGAVAGADGRTFRTQRSNSSEGWVDQYTSSSLV
Sbjct:    1 MPGLVDQDYASQHPQSQAPLDSNGPPQSIYRSSVASAEGERVPMLPGGAQSSLVSTAIVAADAMRVRGTPG-GEEDDDGSXXXXXXXXXSAGKTMDASAEGAAAEGGFGDGDMVSGGVSDRSGRSTRQRSRDQGDHASDIHPGEGADEYAIRRSGSGNRPTRFSNGMANGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDIPELATPRDGEDGDMSFYDGNSRLEEEVVDNFADIPTPAPRGAGGRGSGAVAGADGRTFRTQRSNSSEGWVDQYTSSSLV 284
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BLAST of mRNA_Ecto-sp13_S_contig906.20616.1 vs. uniprot
Match: A0A6H5JJI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI5_9PHAE)

HSP 1 Score: 387 bits (993), Expect = 2.360e-121
Identity = 241/289 (83.39%), Postives = 246/289 (85.12%), Query Frame = 2 
Query:    2 DDTVDMGSMPGLVDQDYASQHPQSQAPLDSNGPQQSIYRSSVASAEGERVPMLPGXXXXXXXXXXXXXXXXXXXRGTPGQGEEEDDGSGXXXXXXXXSAGKTMDASAEGAAAEGDFGDGDMVSGLSDRSGRSTFQRSRDQGDHASDIHPGEGADEYVIRRSGSGNRPARSSNGTANGTGXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDMPELATPRDGEDGDMSFYDGNSRLEEEVVDNFADIPTPAPRGAGARGSGAVAGADGRTFRTQRSNSSEGWVDQYTSSSLV 868
            DD V+MGSMPGLVDQDYASQHPQSQAPLDSNGPQQSIYRSSVASAEGERVPMLPG                   R T  +GEE      XXXXXXXXSAGKTMDASAEGAAAEGDFGDGDMVSGLSDRSGRST QRSRDQGD ASDIHPGEGADEY IR+SGSGNRP R SNG ANGTGXXXXXXXXXXXXXXXXXXX       ED+DMPELATPRDGEDGDMSFYDGNSRLEEEV+DNFADIPTPAPRGAGARGS AVAGADGRTFRTQRSNSSEGWVDQYTSSSLV
Sbjct:  975 DDAVNMGSMPGLVDQDYASQHPQSQAPLDSNGPQQSIYRSSVASAEGERVPMLPGGAQSSLVSTAIVAADAMRVRETRVRGEEXXXXXXXXXXXXXXSAGKTMDASAEGAAAEGDFGDGDMVSGLSDRSGRSTLQRSRDQGDQASDIHPGEGADEYAIRQSGSGNRPTRFSNGMANGTGXXXXXXXXXXXXXXXXXXXARGGGREEDIDMPELATPRDGEDGDMSFYDGNSRLEEEVLDNFADIPTPAPRGAGARGSEAVAGADGRTFRTQRSNSSEGWVDQYTSSSLV 1263
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig906.20616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWW0_ECTSI2.680e-12786.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJI5_9PHAE2.360e-12183.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig906contigEcto-sp13_S_contig906:4409..6666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size958
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_004600.1
Cds size942
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464178.7425456-UTR-Ecto-sp13_S_contig906:4408..44241681464178.7425456-UTR-Ecto-sp13_S_contig906:4408..4424Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig906 4409..4424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464178.7554202-CDS-Ecto-sp13_S_contig906:4424..44661681464178.7554202-CDS-Ecto-sp13_S_contig906:4424..4466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig906 4425..4466 +
1681464178.7653124-CDS-Ecto-sp13_S_contig906:5514..58131681464178.7653124-CDS-Ecto-sp13_S_contig906:5514..5813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig906 5515..5813 +
1681464178.7812653-CDS-Ecto-sp13_S_contig906:6065..66661681464178.7812653-CDS-Ecto-sp13_S_contig906:6065..6666Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig906 6066..6666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig906.20616.1prot_Ecto-sp13_S_contig906.20616.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig906 4425..6666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig906.20616.1

>prot_Ecto-sp13_S_contig906.20616.1 ID=prot_Ecto-sp13_S_contig906.20616.1|Name=mRNA_Ecto-sp13_S_contig906.20616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=314bp
MGSMPGLVDQDYASQHPQSQAPLDSNGPQQSIYRSSVASAEGERVPMLPG
GAQSSLVSTAIVAADAMRVRGTPGQGEEEDDGSGGVGGGGGSSAGKTMDA
SAEGAAAEGDFGDGDMVSGLSDRSGRSTFQRSRDQGDHASDIHPGEGADE
YVIRRSGSGNRPARSSNGTANGTGGVGGAGGAAATAANGGSGGARGERGE
EDLDMPELATPRDGEDGDMSFYDGNSRLEEEVVDNFADIPTPAPRGAGAR
GSGAVAGADGRTFRTQRSNSSEGWVDQYTSSSLVVSKAAPSASSQQQQQQ
QQAAAEAARGGAS*
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mRNA from alignment at Ecto-sp13_S_contig906:4409..6666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig906.20616.1 ID=mRNA_Ecto-sp13_S_contig906.20616.1|Name=mRNA_Ecto-sp13_S_contig906.20616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig906:4409..6666+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGATGACACGGTCGACATGGGATCTATGCCCGGTCTCGTCGACCAGGATT
ACGCCAGCGTGAGTTGTACGTGTAACAGTTGTTTGCTGTTGGGTCCCAAG
AGGAAGACGTGTTTTTTGGCCTTGTTGGGTTTGCAATAGTCAGGTGGTGG
CTGTGCCGGGCTGAACGCGTTGGTTGCCATCTCTGTGTCGGTGCGAAAAT
GGGATGGTTGTGCGGGCTGAACGCGTGCCACCTGAAAAAATGGGCTGGTC
GTGAGAGAGCCGGTTCTAGTCCGGTGTTGGTTACTGTTGCCCGCGATGGA
AAGGATTTGGTAGCGGCAGCAAACGGTTGGCGTCACGTTGGCCGACCGGA
GGCGCATGAAAATACGGAACACCAAGCAACAGCACGACAGTGAGCGAAAC
CGAGCTCACACGGTGTTTTTCGCCCATACCCCCCGCCAAAAAACTCAAAA
CGTGTTGAACGCGGCAGCAACACCCGCAGTCGCAGGCGCGTGACCTTGAC
GGGAGCTATACCACAAACGAACGCCGAACAAGTCCACGACGACAAAGTGC
TAGATCAACCTCACAGGGCGGTGGTTCCCCTACCCGCCCTACCCCCTCCC
CAACCGAAACGCCCCCGTCCCCGCGGCCGCGGCACCCGCGGTCGCAGTCA
CGTGACCTTGACGGGGGTTTACCGACGATCGAACTTGAAACAAGTGCACG
ACGACAACAACATCAACAAGCCGAACCATGTTCAAACGGCGGTGTTTCCC
CTACACGTGCTGACCCTTCCCCAACCGAAATACTCGTGCCCACGGGGCAG
CAGCAGCAGCAGCAACACCCGCAGTTGCTGGCGCGTGACTTTGACGGGGG
CTTCATCGCAAGTGTACACCAAACAAGTGCCCCGCAAGCGAAACCAACCT
CGTTCGGCGTTTCCCTTACACGCCGTACCCTGCCCCGAACCCAAACACAC
GCGCCCGCGCGGCTACAGCAGCAGCAGCAGCACCCGCTGTCGCAGGCGCG
GGGCGTTGACGGGACGTATGCGACGAACGAACTCGAAACAACTGCTCCAC
AAGCGAAACCAAACGGCGGCGTTTCCCCTATCCCTCCCGACCAACAATCC
CCGCAGCAACACCCGCAGTCGCAGGCGCCGCTGGACAGCAACGGCCCGCA
GCAGAGCATCTACCGCAGCAGCGTGGCCTCCGCGGAGGGGGAGAGGGTTC
CCATGCTGCCGGGCGGGGCTCAGTCCTCTCTCGTTTCCACCGCGATCGTC
GCCGCCGACGCGATGAGGGTTAGAGGGACGCCGGGACAAGGGGAGGAAGA
GGACGACGGGAGCGGCGGGGTTGGCGGAGGTGGCGGCAGTTCCGCGGGAA
AAACCATGGATGCTTCCGCGGAAGGGGCGGCCGCGGAGGGGGATTTCGGG
GACGGGTGAGGAAGGAGTTGTTGTTGTTGTTGCTGTTGAATGTATGTTGT
GTGCGTGCTTTGTTTTGCCGTGTAGTCGTTTTCGTGGGGTGGCGCGTGTC
TGCTGCTGATCCATCCTCACGCATTTCCCACGCACGTACTCTTTCTGTTG
CTACATACCTCCCCCACAATCCCACGGCGTTGCTCATTCCGCAACCGACC
GCGGTCATCGCCTTTGCTGCTGCTGCCGCCCGGAACAAACCCTAACCCTT
GCCGCAGCGACATGGTCTCGGGACTCTCGGACCGATCCGGACGGTCCACC
TTTCAGCGGTCCCGAGACCAGGGCGACCACGCGTCGGACATCCACCCGGG
CGAGGGCGCCGACGAGTACGTCATCCGGCGGTCCGGTAGCGGCAACCGGC
CCGCCCGGTCCTCTAACGGGACGGCGAACGGCACCGGCGGCGTTGGCGGA
GCCGGGGGTGCCGCCGCTACGGCCGCGAACGGGGGCTCCGGCGGCGCGAG
AGGGGAGCGGGGGGAGGAAGACTTGGACATGCCGGAACTGGCGACGCCGA
GAGACGGGGAGGACGGGGACATGTCGTTCTACGACGGCAACTCGCGGCTT
GAGGAGGAGGTGGTGGACAACTTCGCGGACATCCCGACTCCGGCACCGAG
GGGAGCGGGGGCCCGCGGCAGTGGGGCCGTGGCCGGCGCCGACGGCAGAA
CTTTCCGCACCCAGAGGAGCAATAGCTCGGAGGGGTGGGTTGACCAGTAC
ACGAGCAGCTCGCTGGTGGTGTCGAAGGCAGCGCCGTCGGCGAGCTCGCA
GCAGCAGCAGCAGCAGCAGCAGGCGGCAGCTGAGGCGGCGAGAGGCGGCG
CGAGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig906:4409..6666+

>mRNA_Ecto-sp13_S_contig906.20616.1 ID=mRNA_Ecto-sp13_S_contig906.20616.1|Name=mRNA_Ecto-sp13_S_contig906.20616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig906:4409..6666+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGATCTATGCCCGGTCTCGTCGACCAGGATTACGCCAGCCAACACCC
GCAGTCGCAGGCGCCGCTGGACAGCAACGGCCCGCAGCAGAGCATCTACC
GCAGCAGCGTGGCCTCCGCGGAGGGGGAGAGGGTTCCCATGCTGCCGGGC
GGGGCTCAGTCCTCTCTCGTTTCCACCGCGATCGTCGCCGCCGACGCGAT
GAGGGTTAGAGGGACGCCGGGACAAGGGGAGGAAGAGGACGACGGGAGCG
GCGGGGTTGGCGGAGGTGGCGGCAGTTCCGCGGGAAAAACCATGGATGCT
TCCGCGGAAGGGGCGGCCGCGGAGGGGGATTTCGGGGACGGCGACATGGT
CTCGGGACTCTCGGACCGATCCGGACGGTCCACCTTTCAGCGGTCCCGAG
ACCAGGGCGACCACGCGTCGGACATCCACCCGGGCGAGGGCGCCGACGAG
TACGTCATCCGGCGGTCCGGTAGCGGCAACCGGCCCGCCCGGTCCTCTAA
CGGGACGGCGAACGGCACCGGCGGCGTTGGCGGAGCCGGGGGTGCCGCCG
CTACGGCCGCGAACGGGGGCTCCGGCGGCGCGAGAGGGGAGCGGGGGGAG
GAAGACTTGGACATGCCGGAACTGGCGACGCCGAGAGACGGGGAGGACGG
GGACATGTCGTTCTACGACGGCAACTCGCGGCTTGAGGAGGAGGTGGTGG
ACAACTTCGCGGACATCCCGACTCCGGCACCGAGGGGAGCGGGGGCCCGC
GGCAGTGGGGCCGTGGCCGGCGCCGACGGCAGAACTTTCCGCACCCAGAG
GAGCAATAGCTCGGAGGGGTGGGTTGACCAGTACACGAGCAGCTCGCTGG
TGGTGTCGAAGGCAGCGCCGTCGGCGAGCTCGCAGCAGCAGCAGCAGCAG
CAGCAGGCGGCAGCTGAGGCGGCGAGAGGCGGCGCGAGTTAG
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