mRNA_Ecto-sp13_S_contig906.20615.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig906.20615.1
Unique NamemRNA_Ecto-sp13_S_contig906.20615.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig906.20615.1 vs. uniprot
Match: D7FWV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV9_ECTSI)

HSP 1 Score: 516 bits (1329), Expect = 3.400e-175
Identity = 247/263 (93.92%), Postives = 257/263 (97.72%), Query Frame = 1 
Query:    1 SNRYTDTTKTVFACLAFAPILPIAVWICLLSLALSYWSDKWLFMKAWQTPQPPGNSGRVAMLARRHLALAVLAHCVFALYYYAGWPFDRICRFKPGWIECSQEGTGLIQAETQAWMTPPQKTLVDVFSALNVAWLVILLVFYYLQSIMRGISLVVKGAPRKLRSRQHMPFSQLTSRYQHDVDAYVPQIKSSHQPLPLLACDLDFVEPETIPWQVDGHKGESFEDYCLSSSRDMPRTSRYQRARLFSPCVHYPPPAPFEAIGNG 789
            S+RYTDTTKTVFACLA+AP+LPIA+WI LLSL+LSYWSDKWLF+KAW+TPQPPGNSGRVA LARRHLALAVLAHCVFALYYYAGWPFDRICRF  GWIECSQEGTGLI+AETQ+WMT PQKTLVDVFSALNVAWLVILLVFYYLQSIMRGISLVVKGAPRKLRSRQHMPFSQLTSRYQHDVDAYVPQIKSSHQPLPLLACDLDFVEPETIPWQVDGHKG+SFEDYCLSSSRDMPRTSRYQRARLFS CVHYPPPAPFEAIGNG
Sbjct:  682 SDRYTDTTKTVFACLAYAPVLPIAMWIGLLSLSLSYWSDKWLFVKAWRTPQPPGNSGRVARLARRHLALAVLAHCVFALYYYAGWPFDRICRFDQGWIECSQEGTGLIEAETQSWMTGPQKTLVDVFSALNVAWLVILLVFYYLQSIMRGISLVVKGAPRKLRSRQHMPFSQLTSRYQHDVDAYVPQIKSSHQPLPLLACDLDFVEPETIPWQVDGHKGDSFEDYCLSSSRDMPRTSRYQRARLFSLCVHYPPPAPFEAIGNG 944
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BLAST of mRNA_Ecto-sp13_S_contig906.20615.1 vs. uniprot
Match: A0A6H5JJI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI5_9PHAE)

HSP 1 Score: 516 bits (1328), Expect = 2.310e-171
Identity = 247/263 (93.92%), Postives = 257/263 (97.72%), Query Frame = 1 
Query:    1 SNRYTDTTKTVFACLAFAPILPIAVWICLLSLALSYWSDKWLFMKAWQTPQPPGNSGRVAMLARRHLALAVLAHCVFALYYYAGWPFDRICRFKPGWIECSQEGTGLIQAETQAWMTPPQKTLVDVFSALNVAWLVILLVFYYLQSIMRGISLVVKGAPRKLRSRQHMPFSQLTSRYQHDVDAYVPQIKSSHQPLPLLACDLDFVEPETIPWQVDGHKGESFEDYCLSSSRDMPRTSRYQRARLFSPCVHYPPPAPFEAIGNG 789
            S+RYTD TKTVFACLA+AP+LPIA+WI LLSLALSYWSDKWLF+KAW+TPQPPGNSGRVA LARRHLALAVLAHCVFALYYYAGWPFDRICRF+ GWIECSQEGTGLI+AETQAWMT PQKTLVDVFSALNVAWLVILLVFYYLQSIMRGISLVVKGAPRKLRSRQHMPFSQLTSRYQHDVDAYVPQIKSSHQPLPLLACDLD+VEPETIPWQVDGHKG+SFEDYCLSSSRDMPRTSRYQRARLFS CVHYPPPAPFEAIGNG
Sbjct:  670 SDRYTDMTKTVFACLAYAPVLPIAMWIGLLSLALSYWSDKWLFVKAWRTPQPPGNSGRVARLARRHLALAVLAHCVFALYYYAGWPFDRICRFEQGWIECSQEGTGLIEAETQAWMTGPQKTLVDVFSALNVAWLVILLVFYYLQSIMRGISLVVKGAPRKLRSRQHMPFSQLTSRYQHDVDAYVPQIKSSHQPLPLLACDLDYVEPETIPWQVDGHKGDSFEDYCLSSSRDMPRTSRYQRARLFSLCVHYPPPAPFEAIGNG 932
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BLAST of mRNA_Ecto-sp13_S_contig906.20615.1 vs. uniprot
Match: A0A7S2YHU2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YHU2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.530e-16
Identity = 69/294 (23.47%), Postives = 133/294 (45.24%), Query Frame = 1 
Query:    1 SNRYTDTTKTVFACLAFAPILPIAVWICLLSLALSYWSDKWLFMKAWQTPQPPGNSGRVAMLARRH-LALAVLAHCVFALYYYAGWPFDRICR--------FKPGWIECSQEGTGLIQA--------------------------------ETQAWMTPPQKTLVDVFSALNVAWLVILLVFYYLQSIMRGISLVVKGAPRKLRSRQHMPFSQLTSRYQHDVDAYVPQIKSSHQPLPLLACDLDFVEPETIPWQVDGHKGESFEDYCLSSSRDMPRTSRYQRARLFSPCVHYPP 759
            + RYT+ TK +F  + +  I P A+++C  +L ++Y++D++  M+ W+  + P    R++  +R + +  A++A  V   Y+++G+PFD +C         F   W+   + G   +                                  + + WMT  Q+T+ DV+   +V  +++L+V   L+        + KG+       Q + FS++ S     + AYVPQ++S+    PL+AC++D ++P    W  D  +  SF D    +   +  T    +  +FS   H+ P
Sbjct:  744 AERYTNMTKILFLTVFYLSIFPGALFLCSFALFVNYFTDRFSLMRTWK--RAPNYGPRMSEFSRTYFIPCAMVACAVMGSYFWSGFPFDNLCNRNTEIGQEFAGSWLVDPKGGGSNVTVSVATTDDAFDYCLQDFFRYGRDDESFPFISKFQKEQWMTDEQETVTDVWGWTSVG-VILLVVLKLLRGWWSSFWHLFKGSYEPCGQDQKINFSEVPS-----ISAYVPQVESNLFSYPLVACEVDEIDPNLFDW-TDPDRPFSFYDLTKDAEVLLKGTDVASKFSVFSQITHWSP 1028
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BLAST of mRNA_Ecto-sp13_S_contig906.20615.1 vs. uniprot
Match: W4G7D8_9STRA (RSN1_7TM domain-containing protein n=12 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7D8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.870e-6
Identity = 46/172 (26.74%), Postives = 89/172 (51.74%), Query Frame = 1 
Query:    1 SNRYTDTTKTVFACLAFAPILPIAVWICLLSLALSYWSDKWLFMKAWQTPQPPGNSGRVAMLARRHLALAVLAHCVFALYYYAGWP-FDRIC-RFKP-GWIECSQEGTGLIQAETQAWMTPPQKTLVDVFSALNVAWLVILLVFYYLQSIMRGISLVVKGAPRKLRSRQHMP 507
            ++RY+    T+F  L F+  +P+ + I L S+ ++YW+DK+ F++  ++P  P   G++A  A   L  AVL H +F ++ Y+    FD++  +F   G +    +  G I A     +T P + +  +  A+    LV ++VF Y  S +R +  +     +K +  +++P
Sbjct:  991 ASRYSVVINTIFITLMFSSGMPLMLLIGLFSMIITYWTDKFTFLRVVRSP--PQYDGKIAGAAGSLLPWAVLLHTLFGIWMYSNTQIFDKMTTQFSALGSLNAELQRGGRIVARA---ITMPSEVMFGLLVAIAAVALVRVVVFRYFGSALRSVFPICVRMMKKEKPPRNLP 1157
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BLAST of mRNA_Ecto-sp13_S_contig906.20615.1 vs. uniprot
Match: A0A485KVH9_9STRA (Aste57867_11946 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVH9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 6.300e-5
Identity = 45/156 (28.85%), Postives = 78/156 (50.00%), Query Frame = 1 
Query:    1 SNRYTDTTKTVFACLAFAPILPIAVWICLLSLALSYWSDKWLFMKAWQTPQPPGNSGRVAMLARRHLALAVLAHCVFALYYYAGWP-FDR----ICRFKPGWIECSQEGTGLIQAETQAWMTPPQKTLVDVFSALNVAWLVILLVFYYLQSIMRGI 453
            + RY+    T+F  L F+  +P+ + I L S+ ++YW+DK+ F++  +  +PP   G +A  A   L  AVL H +F ++ Y+    F R    +   +    E  + G G I A     +T P + +  +  A+    LV L+VF Y  S++R +
Sbjct:  994 ATRYSVVINTIFITLLFSSGMPLMLLIGLFSMIVTYWTDKFTFLRVVR--RPPEYDGEIARAAGNLLPWAVLLHSLFGIWMYSNTDIFQRMDVNVTALQSINDELQKHG-GRIVARA---ITMPSEVMFALLVAIAAFALVRLVVFRYFASVLRSV 1143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig906.20615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FWV9_ECTSI3.400e-17593.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJI5_9PHAE2.310e-17193.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2YHU2_9STRA2.530e-1623.47Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
W4G7D8_9STRA1.870e-626.74RSN1_7TM domain-containing protein n=12 Tax=Aphano... [more]
A0A485KVH9_9STRA6.300e-528.85Aste57867_11946 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig906contigEcto-sp13_S_contig906:215..3108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score517.7
Seed ortholog evalue3.2e-144
Seed eggNOG ortholog2880.D7FWV9
Model size792
Hectar predicted targeting categorysignal anchor
Exons5
EggNOG OGs28PFW@1,2QW3U@2759
Cds size792
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464178.6537867-CDS-Ecto-sp13_S_contig906:214..4961681464178.6537867-CDS-Ecto-sp13_S_contig906:214..496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig906 215..496 +
1681464178.6651275-CDS-Ecto-sp13_S_contig906:995..11811681464178.6651275-CDS-Ecto-sp13_S_contig906:995..1181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig906 996..1181 +
1681464178.6826491-CDS-Ecto-sp13_S_contig906:2009..20681681464178.6826491-CDS-Ecto-sp13_S_contig906:2009..2068Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig906 2010..2068 +
1681464178.6969695-CDS-Ecto-sp13_S_contig906:2579..26911681464178.6969695-CDS-Ecto-sp13_S_contig906:2579..2691Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig906 2580..2691 +
1681464178.7080567-CDS-Ecto-sp13_S_contig906:2955..31081681464178.7080567-CDS-Ecto-sp13_S_contig906:2955..3108Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig906 2956..3108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig906.20615.1prot_Ecto-sp13_S_contig906.20615.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig906 215..3108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig906.20615.1

>prot_Ecto-sp13_S_contig906.20615.1 ID=prot_Ecto-sp13_S_contig906.20615.1|Name=mRNA_Ecto-sp13_S_contig906.20615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp
SNRYTDTTKTVFACLAFAPILPIAVWICLLSLALSYWSDKWLFMKAWQTP
QPPGNSGRVAMLARRHLALAVLAHCVFALYYYAGWPFDRICRFKPGWIEC
SQEGTGLIQAETQAWMTPPQKTLVDVFSALNVAWLVILLVFYYLQSIMRG
ISLVVKGAPRKLRSRQHMPFSQLTSRYQHDVDAYVPQIKSSHQPLPLLAC
DLDFVEPETIPWQVDGHKGESFEDYCLSSSRDMPRTSRYQRARLFSPCVH
YPPPAPFEAIGNG*
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mRNA from alignment at Ecto-sp13_S_contig906:215..3108+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig906.20615.1 ID=mRNA_Ecto-sp13_S_contig906.20615.1|Name=mRNA_Ecto-sp13_S_contig906.20615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig906:215..3108+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAACAGGTATACGGACACGACGAAGACAGTCTTCGCTTGCCTGGCCTT
CGCCCCTATCCTCCCGATCGCTGTGTGGATCTGCCTCCTCTCTCTGGCAT
TGTCGTATTGGTCCGACAAGTGGCTCTTCATGAAGGCGTGGCAGACCCCG
CAGCCACCTGGCAACAGCGGCCGCGTGGCGATGCTCGCCAGGAGGCATCT
GGCGCTGGCCGTGCTGGCGCACTGCGTGTTTGCGCTCTACTATTATGCGG
GCTGGCCGTTCGACCGCATCTGCCGGTTTAAGGTGCGTGCGTGAGGCGCG
ATGCTCCCCCCCCCCCGCCCCCGCTCCCCCCGAACATGAGAAGAAAAGAG
AAAATGAGGAGGAGAGGTGAAGCGTGCATTGTGGTGGTGGCGATAGGACC
AAGGGACACAGCCTCACCTGCTGTAATAGCTGACGTTTTTACTTTCTTGC
GGTCTAGCCGGTCGTGGGAAGACCTGAGTACACTGGTCGCTGAGACCAAT
ACCATGATTTTCGCACTCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAAC
CCGGCGTGCTCCGTCCCGGCTTTGTGGGAATGCGAGATCAATGTTCTAGC
GACTACGGCATGCACGACTATGAGCCCCCGCCCCCCCCCGAACCCCTCCC
ACATACACGGGTACGTGTGATCAGCAAGCGATCTTCTTTTCTGTCCCACG
ACATGACTGACGTATTTTCATTGCATTCAGCCGCCGTCGATGCTCATTGA
GAAAAGTCGCACGCTAAATTCACGCAAGCAGCCAGGGTGGATTGAGTGCT
CGCAAGAGGGGACCGGGCTTATCCAGGCCGAGACTCAGGCGTGGATGACG
CCGCCGCAGAAGACGCTCGTCGACGTGTTCTCCGCGCTGAACGTGGCCTG
GCTCGTGATACTGCTGGTGTTCTACTACCTGCAGTCCATCATGAGGGGGA
TCTCTCTGGTGGTGAAGGTCCGTTGGTCTTACTGCTGCTGCTGCTCTGCT
TTGTTGCTGTTGCGATTTGGGTATTTGTTGGCTCTGGTTTGCTGCTTTTG
GAAGCCGGAAGTGCCGGGGCAAACACACCCAACGATTAACTTTTGTAGAA
CCTAGGCCAAAATCAAACCATTGGATTACCGTATACACAAGATCACACAC
AACCCCTGGACCCATTTTCAAAGCTCGATTATTCAAAAGCAGCATTAGTC
GCAGGGCCGAAAATGTCGGCGTTGAAGCCATCTGGTTGAGAGCTTTTTGA
AAACGTACCATTTCGACCATGCATCCTCTCCATCGTGGAGTAATCGAGCT
TTGAAAATCGCTCCAGGGGTGTGTTATGTTGTGTCATCTACGATAGTCAG
CGCTGACTAGTTTGATGGTTTGATTTGGGCTTCTATATGCTGCTTTTGTT
TTTGTTGTTGTGTGTCGCCGGTGCGATTTTTTTCATTGTTGTTGGTGGTG
GTACCGTTTCCGTTGTTGATACACGTCGTTCGAAGTTTTGGCGGGCTCTG
TCCGTGTCTCGATGGTGCACGAAAGCTGGCTAGTGTATCAGACCTCTTGT
CATTTCTCCCTATTTTGCCCGTTTCGTGTAGTGGTCTCCCGCTTTCCACC
ACCCTCGTTCATCCAGTGCGTCTTGGTGTAGTTGTTCTTGTTGCTGCTGC
TGTTGTTGTTGTTGTGACCTACAAACCCTGTGCCTTCGCCGTTGTTGCTG
TTGTTTGTTGAACGCGTCAAAAACAACCATCCTCTCACCCTCTCCCCCCG
CCGTTTTCGCATTTTCCTCCGCGCATAACGAAACGAAACATGCAGGGGGC
CCCGCGGAAGCTCCGATCGAGGCAGCACATGCCTTTCAGTCAGCTCACCA
GCAGGTAAGTTAAGGGGAAATTAGTTCATGAGGAAATTGAACAGGGAGGG
CGTACGCAGACCCTAGTCCCAACCCTAACCCTACTCCAGCTTCCCAATTG
CATGCTACTGTAGCGAAGGGGTGTGGAAGCGCAAGGCGGGGAGGGAGGGG
GGGGGTTACGATCGAGAATGGCGATTGTGTGCTGAAAAGATGACGAGGTT
ACCGTCGGCGATTGACGTGAAGGAAACCTACCTAGAGAAGAATGAGGAGA
CGTGTCCACGGAAATGTGATCGGCTACGGAGGGTGCGGGGGTGCGTGTCC
ACCAAGGCGGCAATCTTCAAATCCTCCCCCCACTCACCCCTTGCATAACT
TGCAGGTGACTTCGTTTTGCATGCGTATGATGAAGACACACAAGGCTTTG
GTGAACGATTCGAACCTCATCCCCAATAGCATCGGTCCCGCTGTCGCCCT
TCCCCCCCACGGTCGCCGATGACGATGATTGTCACTGCCATTTTTCCTTG
CCTTGTCTTGTCTAGGTATCAGCATGACGTCGATGCCTACGTACCCCAGA
TCAAGTCCTCGCACCAGCCCCTGCCGCTACTGGCGTGCGACCTCGACTTT
GTGGAGCCGGAAACTATCCCGTGGCAGGTGATTTACAAGTTTTTTTTTTG
TTGGTGATGTTAAGGTGCTCTGGTTGCGATGGTGGCGAGCACGGCTGCTG
CTTGTGGGTACAGTAGTACCGGCGTGGGTGGGGTCGCTTCCGCTGCTGTA
CCGCAGCCTTTTTGTGAGCGCAAATTGTGCGCGTGATGGCAGCGACACCG
GTAATACCCACCAACCATCTTCATCACGCCGCGGCTTCGTTGTCTTCTTT
CGCACACCACGACTTTGCGGATGGCGCAATGCAATATACAGGTGGACGGG
CATAAGGGCGAAAGCTTCGAGGACTACTGCCTCAGCAGCTCGAGGGACAT
GCCGCGGACCTCACGCTACCAGCGCGCCCGACTCTTCAGCCCTTGCGTGC
ACTACCCTCCTCCGGCCCCGTTCGAGGCGATCGGCAACGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig906:215..3108+

>mRNA_Ecto-sp13_S_contig906.20615.1 ID=mRNA_Ecto-sp13_S_contig906.20615.1|Name=mRNA_Ecto-sp13_S_contig906.20615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig906:215..3108+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAACAGGTATACGGACACGACGAAGACAGTCTTCGCTTGCCTGGCCTT
CGCCCCTATCCTCCCGATCGCTGTGTGGATCTGCCTCCTCTCTCTGGCAT
TGTCGTATTGGTCCGACAAGTGGCTCTTCATGAAGGCGTGGCAGACCCCG
CAGCCACCTGGCAACAGCGGCCGCGTGGCGATGCTCGCCAGGAGGCATCT
GGCGCTGGCCGTGCTGGCGCACTGCGTGTTTGCGCTCTACTATTATGCGG
GCTGGCCGTTCGACCGCATCTGCCGGTTTAAGCCAGGGTGGATTGAGTGC
TCGCAAGAGGGGACCGGGCTTATCCAGGCCGAGACTCAGGCGTGGATGAC
GCCGCCGCAGAAGACGCTCGTCGACGTGTTCTCCGCGCTGAACGTGGCCT
GGCTCGTGATACTGCTGGTGTTCTACTACCTGCAGTCCATCATGAGGGGG
ATCTCTCTGGTGGTGAAGGGGGCCCCGCGGAAGCTCCGATCGAGGCAGCA
CATGCCTTTCAGTCAGCTCACCAGCAGGTATCAGCATGACGTCGATGCCT
ACGTACCCCAGATCAAGTCCTCGCACCAGCCCCTGCCGCTACTGGCGTGC
GACCTCGACTTTGTGGAGCCGGAAACTATCCCGTGGCAGGTGGACGGGCA
TAAGGGCGAAAGCTTCGAGGACTACTGCCTCAGCAGCTCGAGGGACATGC
CGCGGACCTCACGCTACCAGCGCGCCCGACTCTTCAGCCCTTGCGTGCAC
TACCCTCCTCCGGCCCCGTTCGAGGCGATCGGCAACGGGTAG
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