mRNA_Ecto-sp13_S_contig9045.20602.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9045.20602.1 vs. uniprot
Match: D8LTZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ1_ECTSI) HSP 1 Score: 200 bits (508), Expect = 1.960e-59 Identity = 116/124 (93.55%), Postives = 116/124 (93.55%), Query Frame = 1
Query: 28 GLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTASIFFLFLVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSY 399
GLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATT VAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSY
Sbjct: 111 GLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATT--------VAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSY 226
BLAST of mRNA_Ecto-sp13_S_contig9045.20602.1 vs. uniprot
Match: A0A6H5JWU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU6_9PHAE) HSP 1 Score: 156 bits (395), Expect = 1.820e-45 Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 1
Query: 4 IACTRQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTASIFFLFLV 258
IAC RQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTAS FF FLV
Sbjct: 35 IACVRQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTASFFFSFLV 119
BLAST of mRNA_Ecto-sp13_S_contig9045.20602.1 vs. uniprot
Match: A0A835ZMU4_9STRA (Snf7 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMU4_9STRA) HSP 1 Score: 147 bits (372), Expect = 2.000e-40 Identity = 85/127 (66.93%), Postives = 103/127 (81.10%), Query Frame = 1
Query: 19 QIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTASIFFLFLVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSY 399
+IK LDQEL+++++AL KAKG A NIK+RAMETLKRKKMYE QRDQ+AGQQFNIEQT F IDSIKDT TT V AMK A+K +K++ KK++I+++ED DD+AXXXXX NEINDIMGRSY
Sbjct: 34 KIKVLDQELLRHKHALAKAKGQAAVNIKRRAMETLKRKKMYEAQRDQLAGQQFNIEQTNFTIDSIKDTQTT--------VQAMKGANKQIKSEFKKMNISEIEDTIDDLAXXXXXMNEINDIMGRSY 152
BLAST of mRNA_Ecto-sp13_S_contig9045.20602.1 vs. uniprot
Match: A0A7S2FVB6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVB6_9STRA) HSP 1 Score: 142 bits (359), Expect = 2.550e-38 Identity = 88/131 (67.18%), Postives = 100/131 (76.34%), Query Frame = 1
Query: 7 ACTRQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTASIFFLFLVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSY 399
A +I LD EL KY+ LKKAKGPTA NIK+RAMETLKRKKMYE QRDQMAGQ FNIEQT FAIDSIKDT TT VAAMKDA+KTLKA+ KK++I+++ED XXXXXX IND+MGR+Y
Sbjct: 56 AMDEKIAKLDLELRKYKEQLKKAKGPTAANIKRRAMETLKRKKMYEQQRDQMAGQAFNIEQTSFAIDSIKDTQTT--------VAAMKDAAKTLKAETKKLNIDQIEDTQXXXXXXXXXXXXINDMMGRAY 178
BLAST of mRNA_Ecto-sp13_S_contig9045.20602.1 vs. uniprot
Match: A0A7S2AMY1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMY1_9STRA) HSP 1 Score: 131 bits (330), Expect = 2.670e-34 Identity = 72/109 (66.06%), Postives = 83/109 (76.15%), Query Frame = 1
Query: 73 AKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTASIFFLFLVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSY 399
AKGPTA NIK+RAM+TLKRKKMYE QRDQMAGQ FNIEQT FAIDSIKDT TT VAAMK A+ TLKA+ KK++I+ +ED DD+ NEIN++MGRSY
Sbjct: 52 AKGPTAANIKRRAMDTLKRKKMYEQQRDQMAGQAFNIEQTSFAIDSIKDTQTT--------VAAMKVAASTLKAETKKLNIDSIEDTQDDLGDMMEDMNEINEMMGRSY 152
BLAST of mRNA_Ecto-sp13_S_contig9045.20602.1 vs. uniprot
Match: A0A7S3K2P3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2P3_9STRA) HSP 1 Score: 125 bits (315), Expect = 4.950e-32 Identity = 75/131 (57.25%), Postives = 94/131 (71.76%), Query Frame = 1
Query: 7 ACTRQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTASIFFLFLVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSY 399
A +IK L+ EL Y+ LK+A+GP +K+RAM LKRKKMYE QRDQ+AGQ FNIEQT F IDS+KDT TT V AMK ASKTLK + KK++I+K++D+ D XXXXXXNE+ D++GRSY
Sbjct: 39 ALDEKIKKLEVELSGYKEKLKRARGPAQKTLKQRAMGVLKRKKMYEQQRDQLAGQAFNIEQTNFTIDSVKDTITT--------VDAMKAASKTLKTEFKKVNIDKIDDLQDXXXXXXXXXNEVQDVLGRSY 161
BLAST of mRNA_Ecto-sp13_S_contig9045.20602.1 vs. uniprot
Match: A0A7S4EE62_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EE62_9STRA) HSP 1 Score: 125 bits (314), Expect = 4.990e-32 Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = 1
Query: 7 ACTRQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTASIFFLFLVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSY 399
A +I+ LD EL Y+ LKKA+G +K+RAM L+RK+MYE QRDQ+AGQ FN+EQT FAIDS+KDT TT V AMK ASKTLK ++KK+D++++ED+ DD+AXXXXXX + D++G+SY
Sbjct: 30 ALDEKIRKLDIELAGYKEKLKKARGAAQQTLKRRAMGVLRRKRMYEQQRDQLAGQAFNVEQTNFAIDSVKDTLTT--------VQAMKTASKTLKKEVKKVDLSQIEDLQDDLAXXXXXXXXVQDVLGQSY 152
BLAST of mRNA_Ecto-sp13_S_contig9045.20602.1 vs. uniprot
Match: A0A812Y1R2_SYMMI (CHMP5 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y1R2_SYMMI) HSP 1 Score: 124 bits (312), Expect = 1.280e-31 Identity = 67/131 (51.15%), Postives = 89/131 (67.94%), Query Frame = 1
Query: 7 ACTRQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTASIFFLFLVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSY 399
A +IK D EL Y+ + KAKGP I++RA+E LKRKKMYE QRDQ+ GQ FN++Q FA+++IKDT TT VAAMKDA+K LK + KID+N++ED+ DD+A NEI++ +GRSY
Sbjct: 30 ALDEKIKAADNELRVYKTQIAKAKGPAKAGIQRRAVEVLKRKKMYEQQRDQLCGQAFNLDQAAFAMETIKDTHTT--------VAAMKDAAKQLKVEHAKIDLNEIEDLNDDLADMFEDMNEISETLGRSY 152
BLAST of mRNA_Ecto-sp13_S_contig9045.20602.1 vs. uniprot
Match: F0Y671_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y671_AURAN) HSP 1 Score: 123 bits (309), Expect = 2.020e-31 Identity = 65/109 (59.63%), Postives = 79/109 (72.48%), Query Frame = 1
Query: 73 AKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTASIFFLFLVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSY 399
AKGP A +K+RAM LKRKKMYE QRDQ+AGQ FN+EQT FAIDS+KDT TT V AMK ASKTLK + KK+DI+++ED+ DD+A NE+ D +GRSY
Sbjct: 52 AKGPAAKTLKQRAMAVLKRKKMYEAQRDQLAGQAFNVEQTSFAIDSVKDTLTT--------VDAMKAASKTLKTEFKKVDIDQIEDVQDDLADMMEDMNEVQDALGRSY 152
BLAST of mRNA_Ecto-sp13_S_contig9045.20602.1 vs. uniprot
Match: A0A7S2ALR0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALR0_9STRA) HSP 1 Score: 120 bits (302), Expect = 4.240e-31 Identity = 67/104 (64.42%), Postives = 78/104 (75.00%), Query Frame = 1
Query: 73 AKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTASIFFLFLVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDI 384
AKGPTA NIK+RAM+TLKRKKMYE QRDQMAGQ FNIEQT FAIDSIKDT TT VAAMK A+ TLKA+ KK++I+ +ED DD+ NEIN++
Sbjct: 52 AKGPTAANIKRRAMDTLKRKKMYEQQRDQMAGQAFNIEQTSFAIDSIKDTQTT--------VAAMKVAASTLKAETKKLNIDSIEDTQDDLGDMMEDMNEINEM 147 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9045.20602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9045.20602.1 >prot_Ecto-sp13_S_contig9045.20602.1 ID=prot_Ecto-sp13_S_contig9045.20602.1|Name=mRNA_Ecto-sp13_S_contig9045.20602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp METLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTASIFFLFLVAback to top mRNA from alignment at Ecto-sp13_S_contig9045:1392..2656+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9045.20602.1 ID=mRNA_Ecto-sp13_S_contig9045.20602.1|Name=mRNA_Ecto-sp13_S_contig9045.20602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9045:1392..2656+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9045:1392..2656+ >mRNA_Ecto-sp13_S_contig9045.20602.1 ID=mRNA_Ecto-sp13_S_contig9045.20602.1|Name=mRNA_Ecto-sp13_S_contig9045.20602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9045:1392..2656+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |