mRNA_Ecto-sp13_S_contig9010.20567.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9010.20567.1
Unique NamemRNA_Ecto-sp13_S_contig9010.20567.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9010.20567.1 vs. uniprot
Match: D7FTW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW4_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 9.260e-18
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:  557 IGKTTNKIPGGDVTTTFPALIVSVSNYNTEYLSTNMTVDGVEDIAFGELFFCIEHGSYSRTAIAEVNPLDIEKFLGNICGFW 802
            IGKTT K   GDVTTTFP L++S S++  E        D  +D +FG L+  I+ G YSRTAIAEV+PLDI  FLGNI GFW
Sbjct:  119 IGKTTKKKLNGDVTTTFPPLVLSSSDFTAENTWATSEDDSFQDASFGRLYLDIKQGDYSRTAIAEVDPLDIGTFLGNIGGFW 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9010.20567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTW4_ECTSI9.260e-1856.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9010contigEcto-sp13_S_contig9010:3090..5500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1389
Hectar predicted targeting categoryother localisation
Exons3
Cds size708
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464174.873815-UTR-Ecto-sp13_S_contig9010:3089..35291681464174.873815-UTR-Ecto-sp13_S_contig9010:3089..3529Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9010 3090..3529 -
1681464174.9123807-UTR-Ecto-sp13_S_contig9010:5259..55001681464174.9123807-UTR-Ecto-sp13_S_contig9010:5259..5500Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9010 5260..5500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464174.8841476-CDS-Ecto-sp13_S_contig9010:3529..38291681464174.8841476-CDS-Ecto-sp13_S_contig9010:3529..3829Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9010 3530..3829 -
1681464174.8933113-CDS-Ecto-sp13_S_contig9010:4081..41771681464174.8933113-CDS-Ecto-sp13_S_contig9010:4081..4177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9010 4082..4177 -
1681464174.9027026-CDS-Ecto-sp13_S_contig9010:4947..52591681464174.9027026-CDS-Ecto-sp13_S_contig9010:4947..5259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9010 4948..5259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9010.20567.1prot_Ecto-sp13_S_contig9010.20567.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9010 3530..5259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9010.20567.1

>prot_Ecto-sp13_S_contig9010.20567.1 ID=prot_Ecto-sp13_S_contig9010.20567.1|Name=mRNA_Ecto-sp13_S_contig9010.20567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=236bp
MLPPSAYSSTVHTPHLYLIGLESFASCILAVDPCLCIVRCRCCCCYCSYH
CYSWCCCQFFYSTIVFRSTCRKRSRRTTRYSSSWSCRTTESSLVRDVTLT
ETELLIGKTTNKIPGGDVTTTFPALIVSVSNYNTEYLSTNMTVDGVEDIA
FGELFFCIEHGSYSRTAIAEVNPLDIEKFLGNICGFWCTWRRMIFTLRAW
CLLHDPLEHRKDLVSSRRKAWDMITLWDLPRKVHR*
back to top

mRNA from alignment at Ecto-sp13_S_contig9010:3090..5500-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9010.20567.1 ID=mRNA_Ecto-sp13_S_contig9010.20567.1|Name=mRNA_Ecto-sp13_S_contig9010.20567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9010:3090..5500- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGAGATTATTTACCCTCACACAGAAATGACTACACTTCTATGCACGG
TAGCTGAGGTCGTTCGTTAACCCATTCTTGCCGGAACACCGGTTCCTCGT
TGGGCGAATACGAGTCGGACCCGCGCTATGTCGAGTTGAATTGCACGATT
TGCCTGCTGTGTGTTTCTCCGTATCGATGTTGCTGACCTCTCAATTCTTC
GAGAAGGATCTCACACCAAGGGTAAGCACTTTCTTGGGTCGATGCTCCCG
CCATCGGCTTATTCGTCCACCGTACATACGCCTCACCTTTATCTCATCGG
CCTGGAATCGTTTGCCTCGTGTATTCTTGCTGTCGACCCCTGTTTGTGTA
TCGTTCGATGTCGTTGCTGCTGCTGCTACTGCTCTTACCACTGCTATTCC
TGGTGCTGCTGTCAATTCTTTTACTCAACGATCGTGTTTCGGTCTACATG
TCGGAAGAGGAGCCGACGGACGACGCGCTACAGTTCTTCGTGGAGTTGCC
GCACAACCGAATCGAGCCTGGTGCGCGACGTCACTTTGACGGAAACAGAA
CTGGTATGGTATTCCTACTGCCGCTGTACAAAATTTCCCTTCGTCGGGAA
ATACGGGATACGTTCTGGTTCACCCACAAATAAACAAGTCTACCCAGAAA
ATATGTAAACCTCCTGAAACGTCCGGAGCATACGGAGCGTACAGAACAGA
CGGATCTAACCACCTTGACTACCGATCACGCGAATTCTCCTTGTTTCGGC
TAGTGAGTTGAGCCGCGGATCTCTGCGTGAACGTTTTGCAGATGTTTGTT
CCGGTCCGCGAAAGTTGTTTCGCTGCATGCCGTGGTTTTTACAGCTCTGG
CCCAGAACTTGGATTCTTCGCTGGGTCAGCGATAGCAATTAGACTGGCTC
TTCAGACTGATGACCCGCCCTGGTAAAAGCTAGGCCCTGCCCGTGACTGA
CGCAGTCGGCAGCCGCCACATACCACCGCGAGGTTGGGAGATCTCGTGTG
TTTTCGACGTCTTCAGGGTGCAATACACACGACTACTTGTGCCCCCTGCC
TCGTATCCTTGTCCCCGAACGCCACTTCGTGTAGCTTCGCACGGAACGAA
TCGGAGTTCATATTCTCCGTCAAAAAGTTTTCAGACCTTCTCGAACAAAT
GCTATATCATACTGGTACAGTTGAGTCACTGCTTGTTTTTTCTGGGGCGC
CACCCACCGTTGCTGGGCGCAATATGTATTCGTACGTGTGCGCGATTTTC
ATGTGTTTTGGGGCGGATTTCCGATGGGCTTGTCCCTCTGGTTTTTCTAT
CTAGATCGCGCTTTCCCCCGCAGCTCATCGGCAAGACCACAAACAAGATT
CCCGGTGGAGATGTGACGACCACCTTCCCCGCCCTTATCGTATCGGTGTC
TAACTATAACACGGAATATGTGAGAAGGAAAGGGGCTACGCTATGGGGGT
GTGCCGGTTCACGCTCGAGAACCTAGGCCTTGGTTTGATCGTGTCCTTGC
CTTGGTCGCCGCGGCAGCAGTACGAGCGTATTGCAGTGCAAACCGCCTTG
CTTTGGCGCCATCTCAAAAATCGATCTCTGTCTCTCTCTACCTGTCCCTT
CCCCACGCCTTTCCTGGCACCCGTTTGCCCCTTGTACATTTCTTTCGTTT
CTTCCATCACTCTGCGCGCAGCTTTCCACGAACATGACGGTTGATGGCGT
TGAGGACATCGCGTTCGGCGAGCTCTTTTTCTGTATCGAGCATGGGTCTT
ACTCACGTACCGCCATCGCCGAGGTCAACCCGTTGGATATTGAAAAGTTT
CTCGGCAACATCTGTGGATTCTGGTGTACGTGGCGGCGAATGATATTTAC
GTTACGTGCTTGGTGTTTACTCCACGATCCCCTCGAGCACCGCAAGGACC
TCGTTTCTTCCAGACGCAAGGCCTGGGACATGATTACGTTGTGGGACCTT
CCGCGAAAGGTTCATCGTTGATAAGTTTGCAGTGAATACGGAGAGTCAGG
AACGGAGGGCGGTAAACATTGGGAACGATATCCCGACTCCCCGTAACCCC
TTCCCGTTCCCTGCTACCACTTGTGAAATCCTCCCCCACAAACTGTTTTC
ACCGTTATTGTCTATCACGTTTGGATAAAACCAACAACTGCAACGGAACC
CCGCCCTAAGCTTCGTCTTACGATGCATCTCTCCGCGCTCTTGCGGTTGA
TGGACCGTGTCTTCGTGAAGATTGATTGTGCGGTGGGTAATAGTAATCGA
CAAAGCGACCTGCTTGGGGGTCGGAGTCTTCGATGTCTTACTCCGACACC
AAGCAGAAGGTGCTCCGGTAGGAGTTCACGAGCAAGAGCGCAATGCTCAG
GAGACAACTGCTCCCCCGGGGCTGCGCATTTTATCCACATATATATGTGA
TATGTGGGGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9010:3090..5500-

>mRNA_Ecto-sp13_S_contig9010.20567.1 ID=mRNA_Ecto-sp13_S_contig9010.20567.1|Name=mRNA_Ecto-sp13_S_contig9010.20567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9010:3090..5500- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCCGCCATCGGCTTATTCGTCCACCGTACATACGCCTCACCTTTA
TCTCATCGGCCTGGAATCGTTTGCCTCGTGTATTCTTGCTGTCGACCCCT
GTTTGTGTATCGTTCGATGTCGTTGCTGCTGCTGCTACTGCTCTTACCAC
TGCTATTCCTGGTGCTGCTGTCAATTCTTTTACTCAACGATCGTGTTTCG
GTCTACATGTCGGAAGAGGAGCCGACGGACGACGCGCTACAGTTCTTCGT
GGAGTTGCCGCACAACCGAATCGAGCCTGGTGCGCGACGTCACTTTGACG
GAAACAGAACTGCTCATCGGCAAGACCACAAACAAGATTCCCGGTGGAGA
TGTGACGACCACCTTCCCCGCCCTTATCGTATCGGTGTCTAACTATAACA
CGGAATATCTTTCCACGAACATGACGGTTGATGGCGTTGAGGACATCGCG
TTCGGCGAGCTCTTTTTCTGTATCGAGCATGGGTCTTACTCACGTACCGC
CATCGCCGAGGTCAACCCGTTGGATATTGAAAAGTTTCTCGGCAACATCT
GTGGATTCTGGTGTACGTGGCGGCGAATGATATTTACGTTACGTGCTTGG
TGTTTACTCCACGATCCCCTCGAGCACCGCAAGGACCTCGTTTCTTCCAG
ACGCAAGGCCTGGGACATGATTACGTTGTGGGACCTTCCGCGAAAGGTTC
ATCGTTGA
back to top