mRNA_Ecto-sp13_S_contig901.20565.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig901.20565.1
Unique NamemRNA_Ecto-sp13_S_contig901.20565.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig901.20565.1 vs. uniprot
Match: D8LQ38_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ38_ECTSI)

HSP 1 Score: 676 bits (1743), Expect = 6.260e-232
Identity = 393/452 (86.95%), Postives = 407/452 (90.04%), Query Frame = 2 
Query:  404 MALDDHASCSSGVMLLEVDECPSVGANIIFKNITGMLGAMVGVALLLNVFNRVSNRRRSRKLKKSIFTLPVYVYSSSTRERAKAARKARPHVMLEYVSFHSAPLDSSQGIEDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXESAYPITCTICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCKAPAFTKSRDRDEVAHGRAVHAINSSAIAQAPPLFRSRSRDESRGSQLDGRRITEGEVDGRMLPGRRSSPLPPASSARSTQVGAIQEERSLTIERAGE--RTQEQARVLEGIQQTGEVVPVRPDWDARGESKLADFAADDQPLAAEHNIAPDTAAAGIGAPIESAVVGSRPLDVGEAAVTASAGSKAADGCADRQGNEMGMSSSESSVPPPSERGVNTTRVAQPRAAPGFGREEVSLDELETGQAGTGKGRGIADVATDGFNA 1753
            MALDD ASCSSGVMLLEVDECPSVGA+IIFKNITG+LGAMVGVALLLNVFNRVSNRRRSRKLKKSIFTLPVYVY+SSTRERAKAAR ARP +         APLDSSQGIEDV      XXXXXXXXXXXXXXXXXXXXXX+SA PITC ICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCKAPAFTKSRDRDEVAHGRAVHAINSSAIAQAPPLFRSRS DESRGSQLDGR  TEG VDG M P + SSPLPP SSARSTQVGA QEERSL IERAGE  RT  QARVLEGIQQTGEVVPVRPDWDARGESK+ADF AD QPLAA HNIAPDTAAAGIGAPI SAV+GSRPLDVGEAAVTA AGSKAAD CA+RQGNE+G+SSSES++PP SERGV TT VAQPRAAPGFGREEVSLDELETGQ GTGKGRGIADVATDGF+A
Sbjct:    1 MALDDDASCSSGVMLLEVDECPSVGADIIFKNITGILGAMVGVALLLNVFNRVSNRRRSRKLKKSIFTLPVYVYNSSTRERAKAARTARPQLQ--------APLDSSQGIEDVGSARSSXXXXXXXXXXXXXXXXXXXXXXDSASPITCAICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCKAPAFTKSRDRDEVAHGRAVHAINSSAIAQAPPLFRSRSPDESRGSQLDGRPRTEGGVDGGMPPVKPSSPLPPESSARSTQVGANQEERSLPIERAGESERTPLQARVLEGIQQTGEVVPVRPDWDARGESKMADFTADGQPLAAGHNIAPDTAAAGIGAPIASAVLGSRPLDVGEAAVTARAGSKAADSCANRQGNELGISSSESNIPPSSERGVKTTGVAQPRAAPGFGREEVSLDELETGQVGTGKGRGIADVATDGFSA 444
[Close]
BLAST of mRNA_Ecto-sp13_S_contig901.20565.1 vs. uniprot
Match: A0A6H5KUT0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT0_9PHAE)

HSP 1 Score: 486 bits (1250), Expect = 2.320e-160
Identity = 263/308 (85.39%), Postives = 274/308 (88.96%), Query Frame = 2 
Query:  884 VIKVLPCGHDFHSDCLDPWLEVKAECPLCK--APAFTKSRDRDEVAHGRAVHAINSSAIAQAPPLFRSRSRDESRGSQLDGRRITEGEVDGRMLPGRRSSPLPPASSARSTQVGAIQEERSLTIERAGERTQEQARVLEGIQQTGEVVPVRPDWDARGESKLADFAADDQPLAAEHNIAPDTAAAGIGAPIESAVVGSRPLDVGEAAVTASAGSKAADGCADRQGNEMGMSSSESSVPPPSERGVNTTRVAQPRAAPGFGREEVSLDELETGQAGTGKGRGIADVATDGFNAVVAEDGCDVGVDQVVL 1801
            +IKVLPCGHDFHSDCLDPWLEVKAECPLCK  APAF KSR RDEVAHGRAVHAINSSAIAQAPPL RSRSR  SRGSQLDGRR  EG+VDG MLP R SSPLPP SSARST VGAIQEERSL IERAGERT EQARVLEG QQTGEVVP RPDWDA GESK+ADFAAD QPLAAEHNIA DTAA GIG P+ESAVVGSRPLDVGEAAVTASAG KAADGCADRQGNE+GM+SSES+VP  +E GVNTT VAQP AAPGFGREEV LDELETGQ GTGKGRGIA+VAT GF+AVVA+DGCDV VDQ VL
Sbjct:    5 LIKVLPCGHDFHSDCLDPWLEVKAECPLCKVPAPAFIKSRHRDEVAHGRAVHAINSSAIAQAPPLLRSRSRHASRGSQLDGRRRREGKVDGGMLPMRPSSPLPPESSARSTHVGAIQEERSLPIERAGERTPEQARVLEGTQQTGEVVPGRPDWDAWGESKMADFAADGQPLAAEHNIALDTAATGIGPPVESAVVGSRPLDVGEAAVTASAGGKAADGCADRQGNELGMASSESNVPQRAESGVNTTGVAQPPAAPGFGREEVPLDELETGQVGTGKGRGIANVATCGFSAVVAKDGCDVSVDQAVL 312
[Close]
BLAST of mRNA_Ecto-sp13_S_contig901.20565.1 vs. uniprot
Match: A0A3F2RQ68_9STRA (RING-type domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQ68_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.120e-10
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 2 
Query:  827 ESAYPITCTICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCKAPAF 985
            E++   +C +CL A+Q +  ++++PC H FH DC+DPWL+ KA CP+CK PA 
Sbjct:   73 EASENASCAVCLNAFQVDARVRMMPCFHHFHPDCIDPWLQEKASCPVCKFPAI 125
[Close]
BLAST of mRNA_Ecto-sp13_S_contig901.20565.1 vs. uniprot
Match: A0A0D2MUW8_9CHLO (E3 ubiquitin-protein ligase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MUW8_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 2.560e-10
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 2 
Query:  848 CTICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCK 973
            CTICL +Y++ EV+K LPCGH +HS+C+D WLE  A CPLCK
Sbjct:  205 CTICLGSYEDGEVLKQLPCGHSYHSECIDAWLEKSAVCPLCK 246
[Close]
BLAST of mRNA_Ecto-sp13_S_contig901.20565.1 vs. uniprot
Match: A0A225WZ07_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZ07_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.710e-10
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 2 
Query:  827 ESAYPITCTICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCKAPAF 985
            E++    CT+CL+A+Q +  ++++PC H FH +C+DPWL  KA CP+CK PA 
Sbjct:  136 EASENACCTVCLSAFQVDSQVRMMPCFHRFHPECIDPWLHEKATCPICKFPAI 188
[Close]
BLAST of mRNA_Ecto-sp13_S_contig901.20565.1 vs. uniprot
Match: A0A3R7KYN5_9STRA (RING-type domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KYN5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.290e-10
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 2 
Query:  827 ESAYPITCTICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCKAPAF 985
            E++   +C +CL A+Q +  ++++PC H FH DC+DPWL+ KA CP+CK PA 
Sbjct:  139 EASENASCAVCLNAFQVDARVRMMPCFHRFHPDCIDPWLQEKASCPVCKFPAI 191
[Close]
BLAST of mRNA_Ecto-sp13_S_contig901.20565.1 vs. uniprot
Match: A0A8C4X9G5_ERPCA (RING-type domain-containing protein n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4X9G5_ERPCA)

HSP 1 Score: 68.2 bits (165), Expect = 1.190e-9
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 2 
Query:  845 TCTICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCKAPAFTKSRDRDEVAHGRAVHAINSSAIAQAPPLFR 1078
            TC++CLAA+ E ++++ LPC H+FH +C D WL   + CP+C+ P FT S       +   +H     A+   PP FR
Sbjct:   54 TCSVCLAAFIEGDILRNLPCSHEFHMNCSDQWLSKNSTCPICR-PNFTASAQLLHPVYDANLHP----ALQAGPPTFR 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig901.20565.1 vs. uniprot
Match: D0MYX3_PHYIT (RING-type domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MYX3_PHYIT)

HSP 1 Score: 68.9 bits (167), Expect = 1.410e-9
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 2 
Query:  845 TCTICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCKAPAF 985
            +CT+CL  +Q +  ++++PC H FH  C+DPWL+ K  CP+CK PAF
Sbjct:  133 SCTVCLNVFQVDAPVRMMPCFHRFHPQCIDPWLQEKGRCPICKFPAF 179
[Close]
BLAST of mRNA_Ecto-sp13_S_contig901.20565.1 vs. uniprot
Match: A0A1A9V9E2_GLOAU (RING-type domain-containing protein n=1 Tax=Glossina austeni TaxID=7395 RepID=A0A1A9V9E2_GLOAU)

HSP 1 Score: 67.0 bits (162), Expect = 2.080e-9
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 2 
Query:  845 TCTICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCKAPAF 985
            +C +CL  +Q  EVI+ LPC HDFH DC+D WL+++  CP+C+A  F
Sbjct:   83 SCAVCLNDFQLNEVIRKLPCAHDFHVDCVDKWLKLRRTCPMCRACVF 129
[Close]
BLAST of mRNA_Ecto-sp13_S_contig901.20565.1 vs. uniprot
Match: UPI001EB08A28 (E3 ubiquitin-protein ligase ZNRF3-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EB08A28)

HSP 1 Score: 73.2 bits (178), Expect = 2.400e-9
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 2 
Query:  827 ESAYPITCTICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCK 973
            +S+   +C ICL  YQEE+V++VLPC HDFH  C+DPWL  K  CPLCK
Sbjct:  255 QSSASESCAICLEGYQEEQVLRVLPCNHDFHRICVDPWLLNKGTCPLCK 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig901.20565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ38_ECTSI6.260e-23286.95RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KUT0_9PHAE2.320e-16085.39RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A3F2RQ68_9STRA1.120e-1047.17RING-type domain-containing protein n=1 Tax=Phytop... [more]
A0A0D2MUW8_9CHLO2.560e-1064.29E3 ubiquitin-protein ligase n=1 Tax=Monoraphidium ... [more]
A0A225WZ07_9STRA3.710e-1047.17E3 ubiquitin-protein ligase n=1 Tax=Phytophthora m... [more]
A0A3R7KYN5_9STRA7.290e-1047.17RING-type domain-containing protein n=2 Tax=Phytop... [more]
A0A8C4X9G5_ERPCA1.190e-938.46RING-type domain-containing protein n=1 Tax=Erpeto... [more]
D0MYX3_PHYIT1.410e-948.94RING-type domain-containing protein n=2 Tax=Phytop... [more]
A0A1A9V9E2_GLOAU2.080e-951.06RING-type domain-containing protein n=1 Tax=Glossi... [more]
UPI001EB08A282.400e-959.18E3 ubiquitin-protein ligase ZNRF3-like n=2 Tax=Hal... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig901contigEcto-sp13_S_contig901:8876..15132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score684.9
Seed ortholog evalue2.8e-194
Seed eggNOG ortholog2880.D8LQ38
Preferred nameTTC3
Model size3277
KEGG koko:K15712
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010721,GO:0010769,GO:0010771,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0030163,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051603,GO:0051960,GO:0051961,GO:0060284,GO:0065007,GO:0070013,GO:0070647,GO:0070936,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:2000026
Exons5
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
Cds size1491
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig901.20565.1prot_Ecto-sp13_S_contig901.20565.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig901 10349..14819 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464174.6629972-UTR-Ecto-sp13_S_contig901:8875..103481681464174.6629972-UTR-Ecto-sp13_S_contig901:8875..10348Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig901 8876..10348 -
1681464174.7306206-UTR-Ecto-sp13_S_contig901:14819..151321681464174.7306206-UTR-Ecto-sp13_S_contig901:14819..15132Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig901 14820..15132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464174.6774604-CDS-Ecto-sp13_S_contig901:10348..111791681464174.6774604-CDS-Ecto-sp13_S_contig901:10348..11179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig901 10349..11179 -
1681464174.6884725-CDS-Ecto-sp13_S_contig901:11613..117001681464174.6884725-CDS-Ecto-sp13_S_contig901:11613..11700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig901 11614..11700 -
1681464174.7017345-CDS-Ecto-sp13_S_contig901:12037..122481681464174.7017345-CDS-Ecto-sp13_S_contig901:12037..12248Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig901 12038..12248 -
1681464174.7122302-CDS-Ecto-sp13_S_contig901:12663..128541681464174.7122302-CDS-Ecto-sp13_S_contig901:12663..12854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig901 12664..12854 -
1681464174.7217329-CDS-Ecto-sp13_S_contig901:14648..148191681464174.7217329-CDS-Ecto-sp13_S_contig901:14648..14819Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig901 14649..14819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig901.20565.1

>prot_Ecto-sp13_S_contig901.20565.1 ID=prot_Ecto-sp13_S_contig901.20565.1|Name=mRNA_Ecto-sp13_S_contig901.20565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=497bp
MCSSSTCQGCARDDGCGWCNGPNAVTSGDCMALDDHASCSSGVMLLEVDE
CPSVGANIIFKNITGMLGAMVGVALLLNVFNRVSNRRRSRKLKKSIFTLP
VYVYSSSTRERAKAARKARPHVMLEYVSFHSAPLDSSQGIEDVESARSSS
SSPSTPVAPSSTRSRSSSEDSESAYPITCTICLAAYQEEEVIKVLPCGHD
FHSDCLDPWLEVKAECPLCKAPAFTKSRDRDEVAHGRAVHAINSSAIAQA
PPLFRSRSRDESRGSQLDGRRITEGEVDGRMLPGRRSSPLPPASSARSTQ
VGAIQEERSLTIERAGERTQEQARVLEGIQQTGEVVPVRPDWDARGESKL
ADFAADDQPLAAEHNIAPDTAAAGIGAPIESAVVGSRPLDVGEAAVTASA
GSKAADGCADRQGNEMGMSSSESSVPPPSERGVNTTRVAQPRAAPGFGRE
EVSLDELETGQAGTGKGRGIADVATDGFNAVVAEDGCDVGVDQVVL*
back to top

mRNA from alignment at Ecto-sp13_S_contig901:8876..15132-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig901.20565.1 ID=mRNA_Ecto-sp13_S_contig901.20565.1|Name=mRNA_Ecto-sp13_S_contig901.20565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6257bp|location=Sequence derived from alignment at Ecto-sp13_S_contig901:8876..15132- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTGCTCAACTCGACTTGTTTGTTCAGTCACCAAGCGCTCACGCACAAG
ACCCAAGGGGTATGAGTAAGAGGCAGGAGGTGTAAAGCAGGCCGTGGGAG
TTCTGCATTTTCCGCTTCTCTGACAGGAAGACAGGCGGATGTCTGGCTTT
TAAACCGACAGAAGTGCCGAAGCGGGGAAACTGGTGCGGCGATACGGTAA
ATTAGAGCTCATATTTCGTTTGTCCAGAGCCGCTGCCCGCGCGCGGCGGG
TACACGAATCAAGCGAACCCGACGCGATCATCTCCGTACAAGAAGACGAG
CAGCAGCAACAGCATGTGCTCCAGCTCTACGTGCCAAGGATGTGCCAGAG
ACGATGGGTGCGGGTGGTGCAATGGTCCCAACGCCGTCACTTCTGGCGAC
TGCATGGCCCTTGATGATCATGCCTCGTGCTCTTCGGGAGTTATGTTACT
GGAGGTGGACGAGTGCCCCTCTGTCGGAGCCAATGTGAGTCTCAACCAAA
CTTGTGCAACGTATCCGCCTGACGCCTATACCTTGCACCTCGAACGTGAA
CGTATCCAACCCCAGCGATTTGGGTCGTTTTTTCTCGTAAGGGCTGTAGG
TTGAGACGAGCAAGACAACGACGCTGGACGCTGGCCGAACTGGCCTGTCA
CTTGCGTCAGATGACGTCAACGAAACGACTGCTTTTATTTCAGAACGTTC
CCCGCCTGGTTACTGCAATAAAAGCAGTCGTTACAGGGTTACGTTGGTGG
TCACGGCAGATGTACACTTCTTCCACTGCTACGCATATCTTGGTATCAAG
TTTCAGCATTGTTGAGTGAGATCAACCACTGAAGTGTAGAGCAAACCCGC
TCCAGAGAAATGCTGCTACTGTAGCGTCACGCGTGGAACGGGAACTTCCT
CATGTAGCCAACGCCCAAATATAGCAGCTTCGGTGATCGACTAGTACACT
TACCGCGTGGGCTCCTGACACTCATACCAGACCCTTCTTGAGCACCGACC
GCCGCATCGGCTAATTTACCTTGCAGTTGGCTGGTGGGATTAGGTCGGAG
AGCATGTACGTGTGAAGGTGGACGGCGTGATATCCTGGTGTTGACAGTTG
ACAAGCGGAGGTTTACTCGTCTTTCACAAAACACAGGGCTGTTGTTGCGT
GGCTTGGGGAAGTGCAGTTCCTTCCATCAAAGCTACTGCCTGGCACATTC
TGGCCTCATGATGTACTGCACCTCACGGAATCACACTACAGCCTATACTC
ACACAAGGCCCCCTCGGGACGCTACCATTTGCCCTCCCGGGGTGACGAAG
TATGACATGCCGAAGGAACCACATGAATACATCGGATTGGATATGAGGTT
AGAGTTGGGATTGGTGTTCAACTTCATGTACCGTTGTCGCTGGAGATGCA
TTTGACACGACGGCGCGGCTTTTCTTGGCCGTTCTTTTCGTTTCTCGGGA
CCTCGCGAACGCGTCAGCTTGAATGGGTTTGAGCGTTTATTGGGCGGAAT
TTCTCGTCGCGGAACACGTCCCGGTGAATCAGAGCCAGTCCTAGCGACTG
TAGGCTTCGAGCAACCTTGCCCCGGATGCCTGGTGAGCTCCGGACACGCG
CCGTACTCCTGCGACGATCCTCCTGTGCGCCGTCAGAACAAAGCGTGAGG
AAAGATTCGCTGCCACGAGAGAAAGCGAAGACTAAGGCGCACGGCGGAGC
GAAAGTGTCGAGTCATTGGAACCCCACGATTCCCTGCTTTTGAAGCCGAG
ATTAAACCATGAGAATAGCGAGCGCTGACATGTCTAATGGTTTGATTTCG
GCTTCTGTGATGACACAATCAACGCCAAACTGCCTGAGCAAGGATCTTAG
ACGAGTGCAAGTACTCTCGACACATGAAACCACTCGAGTCTCAGACTCGC
CGCAGAAGGCACGATCCATCTATCCATTACCCACTGTTGACTGACAACGT
GGGGAGGAGCCACGGTCAAGTGCTGGTGTTTTTTTTTGTTGGAGAAATGG
ATACAGCAGATTGTCTCCAAGGTCTGACACATACGGTCTTGTTTTGGGCT
TCAGCAAGCACTTCCACAGGCTGGGTGATGCTACAGGTTACTCACAACGA
TTAATGCAACCGGAGCAAAGCAAGTGTTAGAGGGAATTGTTCATGTGCAC
ACATCCTCTTGTTATTTCGCGCTCCTTTGCTTTGCTTACTGCTGTACACT
TGACACATTTTTCCCTCTTCCCACCCTACCCCCATTCTCCCTCCCGCGTG
CGTTTTTGGCCTTGCTTACACTTCCAAGATCATCTTCAAGAATATCACGG
GGATGCTGGGGGCGATGGTCGGCGTTGCTCTACTTCTCAATGTGTTCAAC
CGGGTGTCGAATAGGCGGCGAAGCAGAAAACTCAAGAAATCCATTTTCAC
TCTGCCCGTCTACGTTTACAGCTCGTCCACGCGAGAACGAGCAAAGGCCG
CCAGGAAAGCGCGACCGCAGTTGCAAGGCGAGAAACTTTGGGTCACGAAA
AGACATACACCTAGTAGCTTCAAGTTTTTCTTAGATTTGAGGGTTTCAGA
AAAGGGCTGATACATGCAGTGCAGAGGCATGCGAAGGAGACAGCAAGTGC
AGCGAAGGAGGCTCTCGAGTGGGAACATGTTGCCGAGATGTTTTATATGA
GCGAGCATACCGTGTGCTACTTAGATGTGGACGGGTAGTGTGGTAGTCGC
TCACGATGAAGTGCTTCGTACAGGTGGGGAGCAACGTGAACCCAATTTAG
TCATGTTGATTAGCTATTTTGAGTGCAATGGCACCACATTGTCCCACTAT
GCTGCTCTTGATTGGCCCCACTTTGCTCTGATCAGGACAGGAGTGTTAGT
AAGTATTTGATCCCACATTTCGAACCTCAACAAGTGTGATGCTCGAATAT
GTTTCTTTTCATTCAGCGCCCTTGGACTCATCGCAAGGCATCGAGGATGT
CGAATCAGCACGTTCATCTTCTTCGTCACCATCAACGCCTGTGGCACCAT
CATCAACCCGATCACGCTCGTCTTCGGAAGACAGTGAAAGCGCTTACCCC
ATCACTTGCACCATCTGTCTCGCCGCCTACCAAGAAGAAGAAGTGGTGGG
TACAGCAGTGGCTCCCACTCTTAGGCTAACCTGCTATCAATATCAAATCG
TGATCGGTCTAAGTTGTCGGCGATACCAGGATTTGCGCTGTTGAGTTGTT
GTTGGGAGCATATAGAAGTCTTGTCGGTTAGCAACGTCCTCACCAGTTTT
CGGGGTGTCGCACTCTGGTCTAGATTCCGCTTGTGAACAAACAATTCTGA
GCTTCGCTCACCTCGAAGCACCAGACTAGTGCACTGATGATGCAAGCTTG
TGCCCCCACCCTCCCCATCTCAAGGATCTCCTCGCCCTCGTTCTCCGTGT
CTGTGTCCGTCTCTTTAACTTGACCTTGTCAGATCAAGGTTCTTCCTTGT
GGCCACGACTTCCACTCCGACTGCCTTGACCCTTGGCTGGAGGTCAAGGC
CGAGTGCCCACTGTGCAAGGTAAGCCCTCTGCAGCATTGATACTTCTTCC
CTGCCAATATCGCTTCTCTTCGGTCTCTTACCTTGTGTGAACTCATCGGT
AAGCGCTTACCTGCTGGGGTGAAAGGCCTTTCAAAGGTAAGCGCTTACTC
TTCGGTACCCTGCTGTGGCCTTTCCACAGTCGGCTGTCGTATTGCAGATA
CCGCTGTGAGGGTAGCACGCTGCAGGTACCGGTATGCCGAACCAACCACA
TGCGATCTGTGGAGAACAGAGATTTCTCTTCTGCTGTTTTCGATCCCCGT
TTGCCCAGATTTACGGTGCGTATCAAGCATCCCGTTTTGCCGCCGATGTC
GATACGCCTCAAGCCTGCAGGAGTCGTCCATATAATCCCGGTGATGTTGA
AAAAGTTTCATTGAACGATGTTGTTTTGGCCATAACCATGACCACCACCG
CAGGCACCTGCCTTCACCAAATCGCGAGATCGAGATGAGGTGGCGCATGG
CCGCGCGGTGCACGCGATCAACTCCTCTGCCATCGCCCAAGCACCACCGC
TGTTCAGATCGCGATCACGCGATGAATCGCGAGGCTCCCAGTTGGATGGC
AGACGGATAACGGAAGGAGAGGTCGACGGGAGAATGCTTCCTGGGAGACG
GTCGTCACCACTGCCACCAGCGTCTAGCGCACGTTCCACGCAAGTGGGAG
CGATTCAAGAAGAAAGATCGTTGACGATTGAAAGGGCAGGCGAGAGAACA
CAAGAACAGGCGAGGGTCTTGGAGGGGATACAGCAAACTGGAGAGGTGGT
CCCGGTACGGCCTGACTGGGATGCCCGGGGAGAATCGAAATTGGCGGACT
TCGCTGCAGATGATCAACCCTTGGCTGCGGAGCACAACATTGCTCCTGAC
ACGGCCGCTGCCGGCATCGGTGCACCTATTGAGTCCGCGGTCGTGGGTTC
AAGGCCGCTTGACGTCGGAGAGGCGGCAGTCACAGCAAGCGCTGGTAGCA
AGGCTGCAGACGGCTGCGCGGACCGGCAAGGGAACGAGATGGGAATGTCT
TCGTCAGAATCTAGTGTTCCTCCACCTTCCGAACGCGGTGTCAACACTAC
GAGAGTAGCACAGCCTCGTGCCGCGCCTGGGTTCGGTCGCGAGGAAGTTT
CTCTGGACGAGCTGGAGACGGGACAAGCGGGAACAGGGAAGGGCAGAGGT
ATCGCAGACGTCGCTACCGATGGATTCAACGCCGTGGTTGCAGAAGATGG
GTGTGATGTAGGTGTTGATCAGGTAGTTTTGTGACCCAACACCTACTGCC
GATGATATGGAGCTCTGTGAAAGTAGCGCGAAAAACACCTCAAGTACATC
TGTGTCGCCTGTCGTGCAGCACAGCGGTTTTGTTACGACAACGCCAAGGC
ACAGCCATTAATGATGTTTGGTGAGGTTTGGTGAGGTTCGGTTCGCGTTG
TGCTACTAGTTTTACCGAAGGCAGTCGCTTGCAAAATTGTGTATCGGATC
ATTACAACAGCGGGTTGGGTTCAGCTGGTGTCGATGATGCTTTGTTTGAT
TGTCCCTACATCGTTGCTCCCGCAGCTCCACTTGAGAGGCGCTAGTGTTG
ACTTGTTCGTAATGCCGGGCGGGAGGGCGAGTTGGTGGGTTGCTTGGTCT
TGCAGGGGTACTACGATGTTGTGTGACAATCGGCGGCACCCATCGTGTCT
CGAACGTTTTGGCATGGGATGCTTTGCAGTCGAACAAACCATAATGGCAC
TCATTGTGTCCGTCCTGTTGTTGTACATCCGTCATTTGAGACGTGTAGCA
TTCAATCAACACCGTCCGTGATGTAGCGGCAAGGTTAAGGTTATGAGCTG
GGGCGCGCGAGGAGGGTGCGTTTGTATTGGTCAGAAACACGATGTAGCGG
AAAGGTTGTGACCTGGAGCTTGCACGATTAACGTGCGTCGTTTGTGTTGG
TTGGAAAGCTCGTTGTGAGTCGAAGGAGTAAAATAGTTTCGTGCAACAAC
GCGGGGGGCGTAAATATACTTAGAAATAGCGGAGACCGTGTCGCTGCTTG
AAAACCTCTTATTTTTGCCTGAAGCTCGATTCTTTTTTTTTCTTTGTGGT
ATCCCAACGGGCGGCCGCATACACTATTTCGTAGCCTTAACTGTTCTTAT
AGTCAAATGCTGCATTCTTTTTATATGCTTGAAGTTCTGAAACTCCAAGT
GTCTCGGTGGCGCGCACTGTAAAAAGTTTACGTTGTTAATTGTTTCTATT
TTTTTTGTCGTGCCCTTTTTCGTTGGATATAGCAAGGCTCTGGAATGTAC
TGCTTTTCCGACGCCTGGCCTTTACCGCGGTGTGGAACCGCCTGTTTCCT
GTTCTCTAGGAGGTTGCGATACAGTACCTTGCCTGCCTGTGTGTTGTCAC
TGCACACGGGCGTAGAGCAATGTTACCCTTTCTCAGGTCTGCCTTGCGAG
CGTGTCAGCATGTTGAGTCGAATAATGTGGAGGCGTAGATAGATGTGAAT
GGCGAGCATGGAAAGAGACTGACTGCTCTCTCTAAATGTTGCGCTCACAA
CAAGATGGAGGCACCCTCAAGGAGATCGAGGGCAGCTGTGGTGCGCAATG
CGGGGACGATGTGATGCCACCCTCACCTTTCGCGTTCTTCTAGGTGTCTC
CCTGATGTACGTGCGTATCCACTGGCGGGTGGTGTATGTTTCACGATTTT
CCCGGCCTGGGTTCCCAAACCTTCCGCCGATGCATCGAGATAAATTGGGC
TTGCCTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig901:8876..15132-

>mRNA_Ecto-sp13_S_contig901.20565.1 ID=mRNA_Ecto-sp13_S_contig901.20565.1|Name=mRNA_Ecto-sp13_S_contig901.20565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1491bp|location=Sequence derived from alignment at Ecto-sp13_S_contig901:8876..15132- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCTCCAGCTCTACGTGCCAAGGATGTGCCAGAGACGATGGGTGCGG
GTGGTGCAATGGTCCCAACGCCGTCACTTCTGGCGACTGCATGGCCCTTG
ATGATCATGCCTCGTGCTCTTCGGGAGTTATGTTACTGGAGGTGGACGAG
TGCCCCTCTGTCGGAGCCAATATCATCTTCAAGAATATCACGGGGATGCT
GGGGGCGATGGTCGGCGTTGCTCTACTTCTCAATGTGTTCAACCGGGTGT
CGAATAGGCGGCGAAGCAGAAAACTCAAGAAATCCATTTTCACTCTGCCC
GTCTACGTTTACAGCTCGTCCACGCGAGAACGAGCAAAGGCCGCCAGGAA
AGCGCGACCGCATGTGATGCTCGAATATGTTTCTTTTCATTCAGCGCCCT
TGGACTCATCGCAAGGCATCGAGGATGTCGAATCAGCACGTTCATCTTCT
TCGTCACCATCAACGCCTGTGGCACCATCATCAACCCGATCACGCTCGTC
TTCGGAAGACAGTGAAAGCGCTTACCCCATCACTTGCACCATCTGTCTCG
CCGCCTACCAAGAAGAAGAAGTGATCAAGGTTCTTCCTTGTGGCCACGAC
TTCCACTCCGACTGCCTTGACCCTTGGCTGGAGGTCAAGGCCGAGTGCCC
ACTGTGCAAGGCACCTGCCTTCACCAAATCGCGAGATCGAGATGAGGTGG
CGCATGGCCGCGCGGTGCACGCGATCAACTCCTCTGCCATCGCCCAAGCA
CCACCGCTGTTCAGATCGCGATCACGCGATGAATCGCGAGGCTCCCAGTT
GGATGGCAGACGGATAACGGAAGGAGAGGTCGACGGGAGAATGCTTCCTG
GGAGACGGTCGTCACCACTGCCACCAGCGTCTAGCGCACGTTCCACGCAA
GTGGGAGCGATTCAAGAAGAAAGATCGTTGACGATTGAAAGGGCAGGCGA
GAGAACACAAGAACAGGCGAGGGTCTTGGAGGGGATACAGCAAACTGGAG
AGGTGGTCCCGGTACGGCCTGACTGGGATGCCCGGGGAGAATCGAAATTG
GCGGACTTCGCTGCAGATGATCAACCCTTGGCTGCGGAGCACAACATTGC
TCCTGACACGGCCGCTGCCGGCATCGGTGCACCTATTGAGTCCGCGGTCG
TGGGTTCAAGGCCGCTTGACGTCGGAGAGGCGGCAGTCACAGCAAGCGCT
GGTAGCAAGGCTGCAGACGGCTGCGCGGACCGGCAAGGGAACGAGATGGG
AATGTCTTCGTCAGAATCTAGTGTTCCTCCACCTTCCGAACGCGGTGTCA
ACACTACGAGAGTAGCACAGCCTCGTGCCGCGCCTGGGTTCGGTCGCGAG
GAAGTTTCTCTGGACGAGCTGGAGACGGGACAAGCGGGAACAGGGAAGGG
CAGAGGTATCGCAGACGTCGCTACCGATGGATTCAACGCCGTGGTTGCAG
AAGATGGGTGTGATGTAGGTGTTGATCAGGTAGTTTTGTGA
back to top