mRNA_Ecto-sp13_S_contig8993.20536.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8993.20536.1
Unique NamemRNA_Ecto-sp13_S_contig8993.20536.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8993.20536.1 vs. uniprot
Match: D8LS44_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS44_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 6.030e-24
Identity = 59/81 (72.84%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:    4 EVDKAGANSGLCAQRTASASTTKATLPPLAHQDPSSMEKVQRLSWETPGEAAGREAVVVARREPEDGGVKPAAAPNEQQEP 246
            EVDKAG  SGLCAQRT             AHQDPSSMEKV+RLSWETPGEAA REAVV A REPEDG VKPAAAP+ QQEP
Sbjct:  728 EVDKAGGYSGLCAQRTXXXXXXXXXXXXAAHQDPSSMEKVKRLSWETPGEAARREAVVAATREPEDGRVKPAAAPSVQQEP 808
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8993.20536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS44_ECTSI6.030e-2472.84N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8993contigEcto-sp13_S_contig8993:520..768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size250
Hectar predicted targeting categoryother localisation
Exons1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464172.0448134-CDS-Ecto-sp13_S_contig8993:519..7681681464172.0448134-CDS-Ecto-sp13_S_contig8993:519..768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8993 520..768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8993.20536.1prot_Ecto-sp13_S_contig8993.20536.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8993 520..768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8993.20536.1

>prot_Ecto-sp13_S_contig8993.20536.1 ID=prot_Ecto-sp13_S_contig8993.20536.1|Name=mRNA_Ecto-sp13_S_contig8993.20536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
AEVDKAGANSGLCAQRTASASTTKATLPPLAHQDPSSMEKVQRLSWETPG
EAAGREAVVVARREPEDGGVKPAAAPNEQQEPF
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mRNA from alignment at Ecto-sp13_S_contig8993:520..768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8993.20536.1 ID=mRNA_Ecto-sp13_S_contig8993.20536.1|Name=mRNA_Ecto-sp13_S_contig8993.20536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8993:520..768+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGGTTGACAAGGCGGGTGCAAATTCAGGCCTGTGCGCGCAGCGAAC
AGCTTCGGCGTCGACAACCAAGGCAACATTGCCGCCGCTGGCACACCAGG
ATCCCTCGAGCATGGAGAAGGTGCAACGCCTCTCGTGGGAAACCCCGGGA
GAGGCGGCGGGAAGAGAAGCAGTGGTGGTGGCTAGGCGGGAGCCAGAGGA
CGGCGGGGTAAAGCCCGCCGCCGCTCCAAACGAACAGCAGGAGCCCTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8993:520..768+

>mRNA_Ecto-sp13_S_contig8993.20536.1 ID=mRNA_Ecto-sp13_S_contig8993.20536.1|Name=mRNA_Ecto-sp13_S_contig8993.20536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8993:520..768+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGGTTGACAAGGCGGGTGCAAATTCAGGCCTGTGCGCGCAGCGAAC
AGCTTCGGCGTCGACAACCAAGGCAACATTGCCGCCGCTGGCACACCAGG
ATCCCTCGAGCATGGAGAAGGTGCAACGCCTCTCGTGGGAAACCCCGGGA
GAGGCGGCGGGAAGAGAAGCAGTGGTGGTGGCTAGGCGGGAGCCAGAGGA
CGGCGGGGTAAAGCCCGCCGCCGCTCCAAACGAACAGCAGGAGCCCTTT
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