mRNA_Ecto-sp13_S_contig8988.20527.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8988.20527.1
Unique NamemRNA_Ecto-sp13_S_contig8988.20527.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8988.20527.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 2.590e-36
Identity = 75/93 (80.65%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    1 HYSDERARPRPDDAGDRSSTAVAAAAEGGGKMAGTGTKVSDQEGLLNKGSRSGSAHSGSSSRKRAKDLSRPSSPGEAQRERALITPVLTPDVG 279
            HYSDERARPRPDDAGD+S+TAVAAAAEGGG+MAGTGT+VSDQEGL NKG  SGS HSGS+SR+RA D+  PSSPG AQRE++L+TPVLTPDVG
Sbjct:  151 HYSDERARPRPDDAGDQSTTAVAAAAEGGGEMAGTGTQVSDQEGLFNKGGSSGSTHSGSTSRRRANDVGGPSSPGGAQREQSLVTPVLTPDVG 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8988.20527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEF4_ECTSI2.590e-3680.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8988contigEcto-sp13_S_contig8988:2881..3161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size281
Hectar predicted targeting categoryother localisation
Exons1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464171.4394226-CDS-Ecto-sp13_S_contig8988:2880..31591681464171.4394226-CDS-Ecto-sp13_S_contig8988:2880..3159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8988 2881..3159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8988.20527.1prot_Ecto-sp13_S_contig8988.20527.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8988 2881..3159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8988.20527.1

>prot_Ecto-sp13_S_contig8988.20527.1 ID=prot_Ecto-sp13_S_contig8988.20527.1|Name=mRNA_Ecto-sp13_S_contig8988.20527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
HYSDERARPRPDDAGDRSSTAVAAAAEGGGKMAGTGTKVSDQEGLLNKGS
RSGSAHSGSSSRKRAKDLSRPSSPGEAQRERALITPVLTPDVG
back to top

mRNA from alignment at Ecto-sp13_S_contig8988:2881..3161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8988.20527.1 ID=mRNA_Ecto-sp13_S_contig8988.20527.1|Name=mRNA_Ecto-sp13_S_contig8988.20527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=281bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8988:2881..3161+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACTACTCGGATGAGCGTGCCAGGCCAAGACCAGACGACGCCGGCGATCG
AAGTAGTACAGCAGTAGCGGCGGCGGCAGAAGGCGGGGGCAAAATGGCAG
GCACCGGGACGAAAGTCTCCGATCAGGAGGGGCTGCTCAACAAGGGGAGC
AGAAGCGGGAGCGCACACAGCGGTAGCTCAAGCCGGAAGCGAGCGAAGGA
TCTTAGTCGACCAAGTAGCCCGGGTGAAGCGCAAAGAGAACGGGCGTTAA
TAACCCCGGTTCTGACGCCTGACGTGGGAGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8988:2881..3161+

>mRNA_Ecto-sp13_S_contig8988.20527.1 ID=mRNA_Ecto-sp13_S_contig8988.20527.1|Name=mRNA_Ecto-sp13_S_contig8988.20527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8988:2881..3161+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACTACTCGGATGAGCGTGCCAGGCCAAGACCAGACGACGCCGGCGATCG
AAGTAGTACAGCAGTAGCGGCGGCGGCAGAAGGCGGGGGCAAAATGGCAG
GCACCGGGACGAAAGTCTCCGATCAGGAGGGGCTGCTCAACAAGGGGAGC
AGAAGCGGGAGCGCACACAGCGGTAGCTCAAGCCGGAAGCGAGCGAAGGA
TCTTAGTCGACCAAGTAGCCCGGGTGAAGCGCAAAGAGAACGGGCGTTAA
TAACCCCGGTTCTGACGCCTGACGTGGGA
back to top