mRNA_Ecto-sp13_S_contig896.20496.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig896.20496.1
Unique NamemRNA_Ecto-sp13_S_contig896.20496.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig896.20496.1 vs. uniprot
Match: A0A6H5K4K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K0_9PHAE)

HSP 1 Score: 679 bits (1752), Expect = 4.910e-238
Identity = 372/424 (87.74%), Postives = 383/424 (90.33%), Query Frame = 1 
Query:    1 MSQPPTPAGAHGGAGGTGWGPSRKRRRLPGPLAFLQHGAGSAGQQDGGGVSDDDSAQQRLSNDSDPNEGEAGGGHFTKGPWLSLCSAIDAPIAEDGASDSKAVQAFLRGAVSPMSEVLAGDFDLRVPVVTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKEVSIFVSGPGTTRLLNVHPDCVLAVFPADTSPPAPSRLEWLTTCDPPFTPQAVPDSGNGR---HHLSSRXXXXXXXXTSAATRQRGEGFDRRRPRAPSARQSPDYDQQQMTPRLSPPVRLSPQRLRRQEEDQHGQHQQTRRHLL-DEAKGERQGRQKPPQPSATSRNASPEVGSRSSVLNRGIKEMLPPSPSPPLGGSSPPGMLSQSLSPSPWEHQIALGQHRDDATEKGQAQGDEGAATAGDT 1260
            MSQPPTPAGAHGGA G G+GPSRKRRRLPGPLAFLQHGAGSAGQQDG             SNDSDPN GEAGGGHFTKGPWLSLCSAIDAPIAE+GASDSKAVQAFLRGAVSPMSEVLAGDFDLRVPVVTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKEVSIFVSGP TTRLLNVHPDCVLAVF ADTSPPAPSRLEWLTTCDPPFTPQAVPDSGNGR         XXXXXXXX  AATRQRGEGFDRRRP+AP+AR+SP YDQQQMTPRLSPPVRLSPQRLRRQEEDQHGQHQQTRRHLL D+AKGE+QGRQKPPQPS  SRN S EVGS+SSVLN+G K+MLPPSPSP LGGSSPPGM SQS SPSPWEHQIALGQHRDD+ EKGQ QGDEGAATAGDT
Sbjct:   49 MSQPPTPAGAHGGAVGMGFGPSRKRRRLPGPLAFLQHGAGSAGQQDGXXXXXXXXXXXXXSNDSDPNGGEAGGGHFTKGPWLSLCSAIDAPIAEEGASDSKAVQAFLRGAVSPMSEVLAGDFDLRVPVVTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKEVSIFVSGPATTRLLNVHPDCVLAVFAADTSPPAPSRLEWLTTCDPPFTPQAVPDSGNGRPXXXXXXXXXXXXXXXXXXAATRQRGEGFDRRRPQAPAARRSPVYDQQQMTPRLSPPVRLSPQRLRRQEEDQHGQHQQTRRHLLVDKAKGEQQGRQKPPQPSPNSRNVSQEVGSQSSVLNQGSKDMLPPSPSPSLGGSSPPGMFSQSQSPSPWEHQIALGQHRDDSKEKGQGQGDEGAATAGDT 472
[Close]
BLAST of mRNA_Ecto-sp13_S_contig896.20496.1 vs. uniprot
Match: D8LFD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD2_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 4.070e-120
Identity = 181/193 (93.78%), Postives = 185/193 (95.85%), Query Frame = 1 
Query:   94 LAFLQHGAGSAGQQDGGGVSDDDSAQQRLSNDSDPNEGEAGGGHFTKGPWLSLCSAIDAPIAEDGASDSKAVQAFLRGAVSPMSEVLAGDFDLRVPVVTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKEVSIFVSGPGTTRLLNVHPDCVLAVFPADTSPPAPSRLEWLTTC 672
            +AF      SAGQQDGGGVSDD+SAQ+RLSNDSDPNEGEAGGGHFTKGPWLSLCSAIDAPIAE+GAS SKAVQAFLRGAVSPM EVLAGDFDLRVPVVTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKEVSIFVSGPGTTRLLNVHPDCVLAVFPADTSPPAPSRLEWLTTC
Sbjct:    6 VAFCTFHLRSAGQQDGGGVSDDESAQRRLSNDSDPNEGEAGGGHFTKGPWLSLCSAIDAPIAEEGASGSKAVQAFLRGAVSPMLEVLAGDFDLRVPVVTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKEVSIFVSGPGTTRLLNVHPDCVLAVFPADTSPPAPSRLEWLTTC 198
[Close]
BLAST of mRNA_Ecto-sp13_S_contig896.20496.1 vs. uniprot
Match: A0A836CMX7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMX7_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.150e-27
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 1 
Query:  220 GHFTKGPWLSLCSAIDAPIAED------GASDSKAVQAFLRGAVSPMSEVLAGDFDLRVPVVTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKEVSIFVSGPGTTRLLNVHPDCVLAVFPADTSPPA 642
            GHF   PW++LC A+   + +       G S   A   F +     +++VLAG  DLR P++ AVID+ TK S +++VV L DP+G+I+  +H   L EH   L  GAAL L+  +I+VSGPGT R LN+HPD ++AVFP  T  P+
Sbjct:    1 GHFHCAPWVALCEALHILLPQQHRAAAAGGSTLCAESRFRQSFPCAIADVLAGRHDLRAPLIAAVIDTATKASDANLVVTLADPTGKIQAVVHQQALFEHAGDLVTGAALALRRAAIWVSGPGTQRALNIHPDNIMAVFPVSTPMPS 147
[Close]
BLAST of mRNA_Ecto-sp13_S_contig896.20496.1 vs. uniprot
Match: A0A6P8I575_ACTTE (uncharacterized protein C17orf53 homolog n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I575_ACTTE)

HSP 1 Score: 61.2 bits (147), Expect = 1.840e-6
Identity = 43/138 (31.16%), Postives = 69/138 (50.00%), Query Frame = 1 
Query:  226 FTKGPWLSLCSAIDAPIAEDGASDSKAVQAFLR-GAVSPMSEVLAGDFDL-RVPVVTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKEVSIFVSGPGTTRLLNVHPDCVLAVFPADTS 633
            FT+ PW+ + +              + V A +R   +  MSE         +VP +  ++ +++  S +D  + L DP+G I G LH   LEE+   LGPGA L+LK+VS+F   P     LN+ P  ++ ++P D S
Sbjct:  325 FTRDPWVGMFNEYQ-----------ENVPATMRYSIIQVMSEAACQRLRYGKVPSLCVLVKTFSS-SETDSSIFLKDPTGEIHGTLHKKVLEEYQTELGPGAGLILKQVSVFSPSP-RKHYLNITPGNIIEIYPPDPS 449
[Close]
BLAST of mRNA_Ecto-sp13_S_contig896.20496.1 vs. uniprot
Match: UPI000A2A8748 (uncharacterized protein LOC110250240 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8748)

HSP 1 Score: 57.8 bits (138), Expect = 2.280e-5
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:  424 SDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKEVSIFVSGPGTTRLLNVHPDCVLAVFPADTS 633
            +D  + L DP+G I G LH   LEE+   LGPGA ++LK+VS+F   P     LN+ P  ++ ++P D S
Sbjct:  365 TDSSIFLKDPTGEIHGTLHKKVLEEYPSELGPGAGIILKQVSVFSPSP-RKHYLNITPGNIIHIYPPDPS 433
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig896.20496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K4K0_9PHAE4.910e-23887.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFD2_ECTSI4.070e-12093.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMX7_9STRA2.150e-2742.86Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6P8I575_ACTTE1.840e-631.16uncharacterized protein C17orf53 homolog n=1 Tax=A... [more]
UPI000A2A87482.280e-541.43uncharacterized protein LOC110250240 n=1 Tax=Exaip... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig896contigEcto-sp13_S_contig896:10277..15671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start1
Seed ortholog score63.9
Seed ortholog evalue2e-07
Seed eggNOG ortholog13735.ENSPSIP00000006972
Preferred nameC17orf53
Model size1262
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Domain of unknown function (DUF4539)
EggNOG OGs28NJS@1,2QV5E@2759,38GT6@33154,3BD0X@33208,3D40I@33213,48A3R@7711,4963A@7742,4CCS5@8459
Ec32 ortholog descriptionProtein of unknown function DUF4539
Ec32 orthologEc-07_005850.1
Cds size1260
COG Functional cat.S
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig896.20496.1prot_Ecto-sp13_S_contig896.20496.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig896 10277..15671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464168.6381087-CDS-Ecto-sp13_S_contig896:10276..108631681464168.6381087-CDS-Ecto-sp13_S_contig896:10276..10863Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 10277..10863 -
1681464168.6513228-CDS-Ecto-sp13_S_contig896:11308..114381681464168.6513228-CDS-Ecto-sp13_S_contig896:11308..11438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 11309..11438 -
1681464168.66246-CDS-Ecto-sp13_S_contig896:11631..117271681464168.66246-CDS-Ecto-sp13_S_contig896:11631..11727Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 11632..11727 -
1681464168.6732333-CDS-Ecto-sp13_S_contig896:11978..121211681464168.6732333-CDS-Ecto-sp13_S_contig896:11978..12121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 11979..12121 -
1681464168.6878245-CDS-Ecto-sp13_S_contig896:12730..129151681464168.6878245-CDS-Ecto-sp13_S_contig896:12730..12915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 12731..12915 -
1681464168.700146-CDS-Ecto-sp13_S_contig896:15552..156711681464168.700146-CDS-Ecto-sp13_S_contig896:15552..15671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 15553..15671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig896.20496.1

>prot_Ecto-sp13_S_contig896.20496.1 ID=prot_Ecto-sp13_S_contig896.20496.1|Name=mRNA_Ecto-sp13_S_contig896.20496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=420bp
MSQPPTPAGAHGGAGGTGWGPSRKRRRLPGPLAFLQHGAGSAGQQDGGGV
SDDDSAQQRLSNDSDPNEGEAGGGHFTKGPWLSLCSAIDAPIAEDGASDS
KAVQAFLRGAVSPMSEVLAGDFDLRVPVVTAVIDSYTKLSISDVVVELVD
PSGRIKGHLHPGCLEEHGPSLGPGAALLLKEVSIFVSGPGTTRLLNVHPD
CVLAVFPADTSPPAPSRLEWLTTCDPPFTPQAVPDSGNGRHHLSSRPPPP
PTTPTSAATRQRGEGFDRRRPRAPSARQSPDYDQQQMTPRLSPPVRLSPQ
RLRRQEEDQHGQHQQTRRHLLDEAKGERQGRQKPPQPSATSRNASPEVGS
RSSVLNRGIKEMLPPSPSPPLGGSSPPGMLSQSLSPSPWEHQIALGQHRD
DATEKGQAQGDEGAATAGDT
back to top

mRNA from alignment at Ecto-sp13_S_contig896:10277..15671-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig896.20496.1 ID=mRNA_Ecto-sp13_S_contig896.20496.1|Name=mRNA_Ecto-sp13_S_contig896.20496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5395bp|location=Sequence derived from alignment at Ecto-sp13_S_contig896:10277..15671- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCAACCGCCGACGCCGGCAGGAGCTCACGGAGGTGCTGGGGGTAC
AGGGTGGGGTCCTTCGAGAAAGAGACGGCGACTGCCAGGGCCCCTGGCGT
TCTTGCAACACGGAGCTGGGTGAGGGCAGGCGTGTATCAATTTTAAACTT
TTGAATCTGGTTCCCCCGCATCTCCGGAGGTCGTCTTTTGGCCTTGCAAA
ACAGTCGTTGTCCGTCCATTCACTGCTATGAAGACTTCAACACACGACTG
TGGTATTTTCTCGAATGGGTAGTCTTTCTGTGTTTGTATTTATATTTCCT
AAAACTTAAGTTCAAGTTACCACAAGCGGACGCGGTCCTTTACCCAGTGT
GTCCCTTGGGAACGTTGCTTCCATTCTCAACATGTTGCGCATTCCCGCGA
CCTGGCAACGGCGTTGTCGTCTCTTGGAGTGCAGTACCGAGTGCGGCTCT
CAAAATTTCACTACCAGGACCCGGGGCGCACACTTTGTCCACGCCGGCGC
TTCACACACCGCGACCAGCGACAGCAGTTGTTTTTTGTTCCGTGGAGGTT
GGTGGAAAGGGGTGGACCTCCCGCGCGCCTCCTAATCGCTCTTCGTGGAG
AGACTTTTTTTTATTTTATTCGATGGCCATGGCAATTTGTCACCTCTTGT
GTGCGAAGCATGTTGCATCTTGACCATATCGTCTCCCCAACACCAAAAAA
CATTCCCCAAACCAAAATATCGTCTCCCCAACACCAAAAAACATTCCCCA
CATCAAAATCAACCAATAAATTAAATTAACACACCCCTATTAAAAACCAA
AATCAACTAATTTATTAAATAAACACCCCATTGTTTGTTTGCATGCATAT
CTCAGTGTTTGTATTACTGCGAATGCCACCTCAGACTGTCGTAGATTGTG
ACGTCGGATGACCTGTCGGAGATCCACCTTCGGGGTGTTACCACAGATAG
AGCCAGTGCAGGTCGGACGCTGAACCTTGCTTCAACACAAGGTTGCTCCC
CCATGACGCACTCTCTCACTCAACTCAACTATCCGTACATCAGCCTCTCC
ACCAGAGGCTGAACCGGTGTGTATCCACACCACACATTCCTAAGGGAACT
TGCTCACACGCGAACCTGGAGACAACAGTCTCATAATTCCAATAGTTGTT
TTTTGTTCCGTGGAGGTTGGTGGAAAGGGGTGGACCTCCCGCGCGCCTCC
TACTAATCGCTTTTCGTGGAGAGACTTTTTTTTTTTATTCGATGGCCTTG
GCAATTTTGTGTGCGAAGCATGTTGCATCTTGACCATATTACGTATTCCA
ATTTTTTGTTGGACCAGAGTACACTACCGCTGTCTCCACAGCATAGTTCA
AGCACAAGAAACATCCACTTGGGACAAGTTGGAGAGCCGGGTAGCTACCC
GTCCTCCCACCGATCACATGTCGATATTGTAGGATATTTTGTAGGATAAA
GACAGACGATTGGGCGATGGTCGGCGCCGAGGGGAATCCTCCGAAAGACG
CAGCACAGCTGCAGCACACACACGTAAACACACGGAACAACCAGCGCGGC
AGCACACGAGACTGCTGTAGACCAAACAACAGCAAAAGGCACATATCATT
GGAGGCGTCGGGTCGGGCGACTGTCAGAACCCGTTGCCTACCGTTGGCAG
CATAAGCGAGGGAGGCGACACAGGTCAGTTTGTTGTCTGTCTTCACCGGC
AGGCCGATCATTTGAGCTTCCCACACAGATGCACCCCCAAAACAGAGACA
ACGAGACGTAAACACTGGTGCAGGCCAACGGTGGTCAAAGGAACACATCA
TACGAGACGTCGGGAGGGACATTTGAAGCCCGTTACCTGCTGCTAGCAGC
GTATTAGCGAGGGAAGCAAGTGCACGCGAGTCAACCAATGTGCAGTGTGT
CGTCGTCTATCTGCAGGCCGCTCTTTTGATCCTTAACAGGCGCACACCAA
AACAGAGAGACAATGAGACGTGCGCACTGCTGTAGACCAAGGGCGACCAA
ATACACACAACATAGGAGGCGTCTGGAGCGGTTTTTAGGGCCCGTTTCCT
GCTGCTAGCAGCGCAAGCGTGGGAAGCAAGTAGTGCACACATCCACACAG
TAGCAGCAGCAGCAGCTGCAGCAAGCAGCTGATGGAGGAGAGCTTCGTCC
ACACCAAACGACGCTCTCACCCGTCCCCGCGTTGCTACACGGCAGAGAGA
AGTTCCGCATACACATCTGCATGGTTGTGTCGGGTTAGAGGTGTGAGCGT
GTGCAGTGGCAGTGGTGACATCTGTGCGATGGCTCTTCGATCCAGATCCA
TCTCCGCCTCCTTGCCTCTCTCTCTCTCCGCCCGTTCGTTTTTATGCTTC
GAACGAAATAAATTATTTGATATAAATCGGACCCCTATGCATGGGAGGTG
AGCATATTTTTTGGGACAACACCAGTGACCGTCCTACCGGTGCATGGTGC
TAGCCAACCCTATAGTGTGATAACTCCCTGCGGGAATCTATTGGCTACCT
GAACATGGCTTGACACAGCCCTGACACATGGCATTCCGAACAACAGTCGC
GGGTCCAGAAAGGCACGCGGCTGCTGGAGCTGCGTTTAGGTGGAGGAATT
CATTCAGTATTTTCGTGCTGAATCATGGACTGTTGCTCGTCTACTGTACC
CCCGTTGCGTCTGCTTTATAAGGGCAGTATGCCCTTCCTCTGAATCACAC
CCGATATTACTGCCGATGTGCGCGTGTCTGGTGGCCTTTCGCACATTCCA
CCTCAGAAGCGCAGGGCAGCAGGACGGCGGCGGTGTTTCCGACGACGACA
GCGCGCAACAGCGGCTGAGCAACGATAGCGATCCGAACGAGGGCGAGGCC
GGGGGCGGACACTTCACGAAAGGGCCGTGGTTGTCGTTGTGCTCGGCCAT
TGACGCCCCCATCGCGGAGGACGGAGCGAGTGACAGCAAGGGTACGGCCG
TGCCCGCTCTGTTACTTGTCCTAGAAACTGTACGCCTGCGCCGGTTGTTC
GCTTTGCGCGCAATACGCGCGAGCACGCTCGTGCCGAGGCTGTTGGTCCC
GCTCATTGAGGCGAACGTGTTGTCTGGCAGTTGTTTTTGTGCTTGACAAC
CGATGCCCCCTTTCACGGGAGTGGTTTTGAGTGACGGCGTATGTGGGCCG
TGAGGGGAAGGCTAAGGGGTCGAACGGTGATGGGAAGATCAATAAGTCGG
TGTTCCGTCTTGCTCTCAAGTGTTTGAACGGTTTGAACCGGTCAGGTGTC
ACGCAGCGTGCGATCGTATGCGCCCTGCGAGACAAGAAGGTAGAGGCGAC
ACCAAAGGTACGGCGGAGGGGTGTTGGACCCTTTTGTTTTCGGTGCCTAG
ACTCTGCACGCCCACTTTCGTGAGTGTTTCTCTGGGCAATATGGGGATTA
GTTGGAGTGTCGCCGGCTTCTACGTTGACCTCTGGAAAGTCCTTCAAAAC
GCCATCATGCTCTTGCCCTACCAATACCAACCGGTGACTAAGACTTGCCC
CGACGTTTTTGCGATCCACGCTTGGCTTGTTCTCTCTGCGCAACGATCAG
CGGTACAAGCGTTTCTGCGGGGAGCCGTGTCCCCGATGTCGGAGGTTCTT
GCCGGAGACTTTGATCTGCGTGTGCCGGTCGTGACTGCCGTCATCGACTC
CTACACGAAGCTCTCAATCAGTGACGTTGTCGTTGAGCTCGTGGTGAGTG
GAGTGACTTGATTCCACATCTCTCTCTCTAAGGTGTTACATCCTTGCTTG
CTTTATGCTGGTAAGGAAAGATGTATCACGTCGCTGCTGCTGCTGCTGCT
GCCGCTGCTGCTGCCGCCCCCGTTGTTGTTACCGTTGTCGTTGGAGTCGT
CGTTTTTTTTGTTTTTCGCCCCTGCATCGCACGTCGGAGTGATTCGAACA
ACGACCGTACTTCCCTGCCAATGCCGCAATGGGACCAATTGCAGGACCCT
TCAGGAAGAATAAAAGGACACCTGCATCCGGGCTGCTTGGAAGAGCACGG
CCCCTCCTTGGGCCCAGGCGCGGCACTACTACTGAAAGAAGTGGGTATAG
AGCAGAGCAGAGAGAAGTAAATGTCTTCTGAGAGCGTTGAACGGCCTGTC
CGTGATTTGACGTCGTTGGAATTTTTCGTGTCGTACATTTGTGTTTTTTC
GTGCGTCTCCACTTTCTCTCACGAAAACTCGACAACCGGTCGCCCCATTG
CCCAAACTCGGCCCAATTCTTGTCTGTTGCAAGGTGTCTATCTTCGTGTC
GGGACCCGGCACAACCCGATTGCTCAACGTGCATCCCGATTGCGTCCTCG
CTGTGTTTCCGGCGGACACGTCGCCACCAGCGCCTTCGCGTTTGGAGTGG
CTCACAACTTGCGGTGGGTCGTAGCCACTCAAACATGCGAAACGATGAGA
TCGTAGTCTTGGAGCCCCTTCCAAGTGTGAAGAGGGTTTGCTGCCGGCAC
TGCATTGGCACCCCTCCCTCGATCCACAACCATGTCCTTTTGAGTAGGCA
TCGGCAGTGCTCTATAGGGGCCAAACCCGCTGTATCTTTGTTGTGATACT
TGTTGGTAGGGCTCCGGCTAGTTCTCCAGGCTGTAGAACAGCAAGCTGTC
GTCTGAAGTCGGTAGTACTCCCACCAACTTAGTTGATTGAACGTACGAGT
ACGAGCCTGCCTGTATCCCCACGCTGCTACATTAGGTGTCTAGTTCCACC
AAGATAGGCTTCCAAGACAACTCCTGGGCCGGATTTTCTTTTTAGCGTGG
ACAGCACACGCCCTAGCTAAGCCTGTGATGTCTCCGGGCTGTTTTGCTTT
CTTTGCAGACCCGCCGTTCACACCGCAGGCCGTCCCCGATTCTGGCAACG
GCAGACACCACCTTTCGAGTAGGCCACCACCTCCGCCTACAACCCCGACG
TCGGCGGCGACGAGACAGAGAGGGGAGGGGTTCGACCGACGAAGACCACG
AGCACCGTCCGCCCGACAAAGTCCCGACTATGATCAGCAGCAGATGACGC
CACGGTTGAGCCCTCCGGTCCGTCTGTCACCCCAGCGTTTGCGTAGGCAG
GAGGAAGATCAGCACGGGCAGCATCAGCAGACCCGGCGCCACCTGCTAGA
CGAAGCCAAGGGCGAGAGGCAAGGGCGGCAGAAGCCACCACAACCGAGCG
CAACCAGCAGAAACGCATCGCCAGAAGTCGGGAGTCGGTCCTCGGTTCTG
AATCGGGGCATTAAGGAGATGCTGCCGCCCTCCCCCTCCCCTCCCCTGGG
TGGATCGAGCCCTCCTGGGATGCTGTCTCAGTCGCTATCGCCGTCGCCAT
GGGAGCACCAGATCGCCCTCGGGCAACACCGTGACGATGCCACCGAGAAG
GGACAGGCACAGGGAGACGAAGGTGCAGCAACAGCAGGCGACACA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig896:10277..15671-

>mRNA_Ecto-sp13_S_contig896.20496.1 ID=mRNA_Ecto-sp13_S_contig896.20496.1|Name=mRNA_Ecto-sp13_S_contig896.20496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1260bp|location=Sequence derived from alignment at Ecto-sp13_S_contig896:10277..15671- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCAACCGCCGACGCCGGCAGGAGCTCACGGAGGTGCTGGGGGTAC
AGGGTGGGGTCCTTCGAGAAAGAGACGGCGACTGCCAGGGCCCCTGGCGT
TCTTGCAACACGGAGCTGGAAGCGCAGGGCAGCAGGACGGCGGCGGTGTT
TCCGACGACGACAGCGCGCAACAGCGGCTGAGCAACGATAGCGATCCGAA
CGAGGGCGAGGCCGGGGGCGGACACTTCACGAAAGGGCCGTGGTTGTCGT
TGTGCTCGGCCATTGACGCCCCCATCGCGGAGGACGGAGCGAGTGACAGC
AAGGCGGTACAAGCGTTTCTGCGGGGAGCCGTGTCCCCGATGTCGGAGGT
TCTTGCCGGAGACTTTGATCTGCGTGTGCCGGTCGTGACTGCCGTCATCG
ACTCCTACACGAAGCTCTCAATCAGTGACGTTGTCGTTGAGCTCGTGGAC
CCTTCAGGAAGAATAAAAGGACACCTGCATCCGGGCTGCTTGGAAGAGCA
CGGCCCCTCCTTGGGCCCAGGCGCGGCACTACTACTGAAAGAAGTGTCTA
TCTTCGTGTCGGGACCCGGCACAACCCGATTGCTCAACGTGCATCCCGAT
TGCGTCCTCGCTGTGTTTCCGGCGGACACGTCGCCACCAGCGCCTTCGCG
TTTGGAGTGGCTCACAACTTGCGACCCGCCGTTCACACCGCAGGCCGTCC
CCGATTCTGGCAACGGCAGACACCACCTTTCGAGTAGGCCACCACCTCCG
CCTACAACCCCGACGTCGGCGGCGACGAGACAGAGAGGGGAGGGGTTCGA
CCGACGAAGACCACGAGCACCGTCCGCCCGACAAAGTCCCGACTATGATC
AGCAGCAGATGACGCCACGGTTGAGCCCTCCGGTCCGTCTGTCACCCCAG
CGTTTGCGTAGGCAGGAGGAAGATCAGCACGGGCAGCATCAGCAGACCCG
GCGCCACCTGCTAGACGAAGCCAAGGGCGAGAGGCAAGGGCGGCAGAAGC
CACCACAACCGAGCGCAACCAGCAGAAACGCATCGCCAGAAGTCGGGAGT
CGGTCCTCGGTTCTGAATCGGGGCATTAAGGAGATGCTGCCGCCCTCCCC
CTCCCCTCCCCTGGGTGGATCGAGCCCTCCTGGGATGCTGTCTCAGTCGC
TATCGCCGTCGCCATGGGAGCACCAGATCGCCCTCGGGCAACACCGTGAC
GATGCCACCGAGAAGGGACAGGCACAGGGAGACGAAGGTGCAGCAACAGC
AGGCGACACA
back to top