mRNA_Ecto-sp13_S_contig895.20480.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig895.20480.1
Unique NamemRNA_Ecto-sp13_S_contig895.20480.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig895.20480.1 vs. uniprot
Match: A0A6H5KJJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ2_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 6.270e-84
Identity = 141/215 (65.58%), Postives = 141/215 (65.58%), Query Frame = 3 
Query:   81 MWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQGSLESPSRIREAEEGDNSDEATLDAGSAKLWKTESQRWGSFYPKKRPPGVDPFCSQRSCWRKPRSKCDVTEYGDRLVSGDIDDKVSSWCTSEILPPNMYLLQTK**LSRELAVVAKIPPKRSWTRVKRSTPPFGPSRSIYAVRYCEMTGVSPYAKKNLDSVTKP 725
            MWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQGSLESPSRIR AEEGD SDEATLDA SAKLWKTESQRWGSFY KKRPPGVDPF SQRSCWRKPRSKCDVTEYGDR                                                                    YCEMTGVSPYAKKNLDS TKP
Sbjct:    1 MWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQGSLESPSRIRLAEEGDKSDEATLDASSAKLWKTESQRWGSFYAKKRPPGVDPFSSQRSCWRKPRSKCDVTEYGDR--------------------------------------------------------------------YCEMTGVSPYAKKNLDSATKP 147
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BLAST of mRNA_Ecto-sp13_S_contig895.20480.1 vs. uniprot
Match: D8LK45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK45_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.240e-35
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 3 
Query:   33 MAKDDAKLVDEVSRQAMWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQ 233
            MAKD AK+VDEVSRQAMWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQ
Sbjct:    1 MAKDGAKVVDEVSRQAMWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQ 67
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BLAST of mRNA_Ecto-sp13_S_contig895.20480.1 vs. uniprot
Match: A0A835Z8L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.670e-14
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 3 
Query:   57 VDEVSRQAMWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLS 221
            VDEV+R  MW EVI KENA IG PH FFL+P+KL F+ RKPTEVDPR   A++ +
Sbjct:    3 VDEVARNKMWVEVINKENAVIGRPHTFFLDPSKLCFLPRKPTEVDPRALAAEAAA 57
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig895.20480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJJ2_9PHAE6.270e-8465.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK45_ECTSI2.240e-3597.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8L4_9STRA1.670e-1463.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig895contigEcto-sp13_S_contig895:17287..19966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1213
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionFAM183 family
Ec32 orthologEc-06_008140.1
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464167.6313202-UTR-Ecto-sp13_S_contig895:17286..173181681464167.6313202-UTR-Ecto-sp13_S_contig895:17286..17318Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig895 17287..17318 +
1681464167.6872225-UTR-Ecto-sp13_S_contig895:19301..199661681464167.6872225-UTR-Ecto-sp13_S_contig895:19301..19966Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig895 19302..19966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464167.6505857-CDS-Ecto-sp13_S_contig895:17318..173631681464167.6505857-CDS-Ecto-sp13_S_contig895:17318..17363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig895 17319..17363 +
1681464167.6635323-CDS-Ecto-sp13_S_contig895:18529..186851681464167.6635323-CDS-Ecto-sp13_S_contig895:18529..18685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig895 18530..18685 +
1681464167.6747024-CDS-Ecto-sp13_S_contig895:18986..193011681464167.6747024-CDS-Ecto-sp13_S_contig895:18986..19301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig895 18987..19301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig895.20480.1prot_Ecto-sp13_S_contig895.20480.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig895 17319..19301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig895.20480.1

>prot_Ecto-sp13_S_contig895.20480.1 ID=prot_Ecto-sp13_S_contig895.20480.1|Name=mRNA_Ecto-sp13_S_contig895.20480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MAKDDAKLVDEVSRQAMWAEVIKKENATIGVPHRFFLNPNKLVFIARKPT
EVDPRTYEADSLSTGHQGSLESPSRIREAEEGDNSDEATLDAGSAKLWKT
ESQRWGSFYPKKRPPGVDPFCSQRSCWRKPRSKCDVTEYGDRLVSGDIDD
KVSSWCTSEILPPNMYLLQTK*
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mRNA from alignment at Ecto-sp13_S_contig895:17287..19966+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig895.20480.1 ID=mRNA_Ecto-sp13_S_contig895.20480.1|Name=mRNA_Ecto-sp13_S_contig895.20480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2680bp|location=Sequence derived from alignment at Ecto-sp13_S_contig895:17287..19966+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGACACACACACCTCAACCAGTGTCGTCCAAAATGGCGAAGGATGACGCG
AAGCTCGTGGATGAAGTCTCTCGGCAGGTAAGAGGTATGAGTATCCCTAA
TTTGCTGGTATTCTTCAACGGTTTGACAAGCACAGCGTGTCTACAACATC
AACGGTCCTACAGCGTGCGAAAAGGCAGCTCCTCATCAACGGTCCTACAG
CACGTACCTTCTATCACCCCGTGCCGATCATCGTAAGCACCTAAAGCACA
CGCTGCTGTGCTGAAGAGAGAACACGGTATGGCGTGATGAAGCCCCCGCT
CTACGGGATGCCTCGAAAACGTTCTTGTCAGTACCAGTGTACTACTGTAC
TGCTGTAGGAGTACTGCTGTAGTGGAATAGTCTACCAGTTGCAGCTTGAT
GGCAAAATCCATGGTGTACCACAGAACCCAATGGAATGCCGTGATATGCC
ACGGCAGGAGAGTTACTGTTTGACACACTTACTTTTGACACCCGTATGTT
AATCCGCATGTGGTGCATGTGGTGAACTCACTCTGTTTCACAGAACCCAA
TGGAATGCCGTGATATGCCACGGCAGGAGAGTTACTGTTTGACACACTTG
CTTTTGACACCCGTGTGTTAATCCGCATGTGGTGCATGTGGTGAACTCAC
TCTGTTTATATCAAATTTCTGTCAATGCGGAAAAAAGCATGCATGCTCTT
CTTCCTGCTTGCTGGTAACGGCGCAGCCAGTAGATACAACACGCCCTTAT
TATACTTAATCGCATTGATAGATCCGTATCCAACACATCGGCAACCTTGT
CATTTTCGACACCCCGCTAACACGGCTGGGGTGTTCACACCTTCTCTACG
GTTCTTAGTCTTCTTCTTTCAGAAAATCACTACGCCAAGAGACTCCTGCC
ACTCAACAACATCCTCGATGTACTCCAGATCTACCGAAGACCACAAAACA
AAGGAGAACGACTCTATACCCGAAACCTTTCATCCTCGAACAAAACTTCT
TGAGCTGGTGGAGTCCGCGGGTTCCTCTTCTCTCCAGTGTACTGATGAAA
ACAGGAGACATACGTCCATTAGTTGTACGGCGCCGGACACAGAGCCCCAA
TAGGGAATCGGTTACACGGCAGCGGCATCCAGAAGCTCCGACGTTTCGCC
CCAGAACCGAGGAGTGATCGCTGCTTGACCGTACATGCATCAACAGAGCT
TTGATCTGTAGTTTGTTCTACGCTTGAATTTCCCTTCCGGCAGGCGATGT
GGGCGGAGGTGATCAAGAAAGAGAACGCCACAATCGGTGTGCCCCACCGG
TTCTTCCTCAACCCCAACAAGTTGGTATTCATCGCTAGGAAGCCTACGGA
GGTTGATCCAAGGACGTACGAGGCGGACTCTTTGTCGACAGGGCATCAAG
TAAGGACGTGTATGCCCCGTCCAATTTGATGTGAAAGGTGCAGGAAATTG
CAACTGCCTATTCCAAGCATAAAGGTGTGCATTCCTTTAGAAACCACATA
TCACGCACGCAACAAGAGGACGGCACACGTGAGCATCTTTGTGCGTAACG
CGTGAAAAATCGTAACAAGGATTATGAACGTGTGGTGGGTGGATGGGTTG
TCCTATGTGTTCTTCTGACAACTTGTCCTTGTGCGGAAGACATTGGTCTT
GTTAAAAGTACTACACGTAATCCCAAGCCATTATCCGACGTTTCTGACAG
GGCTCCCTTGAGTCGCCTTCGCGCATCAGAGAGGCAGAGGAGGGCGATAA
CAGCGACGAAGCCACCCTTGACGCGGGTAGTGCTAAACTATGGAAAACGG
AATCCCAGCGATGGGGCAGCTTTTACCCCAAGAAGAGACCACCGGGGGTG
GATCCCTTTTGCTCGCAGCGAAGCTGCTGGAGGAAACCACGTTCGAAATG
CGACGTCACAGAATATGGAGACAGGTTGGTCAGCGGGGACATAGACGACA
AAGTTTCGTCCTGGTGCACTTCTGAAATACTGCCGCCCAATATGTACTTG
TTGCAAACCAAATGATGACTCTCGAGAGAATTGGCAGTAGTTGCTAAGAT
CCCACCCAAACGTTCATGGACGCGCGTGAAACGCTCAACACCTCCGTTTG
GCCCGTCTCGCTCGATTTACGCCGTCAGGTACTGCGAGATGACCGGGGTC
AGCCCCTACGCAAAGAAGAACTTGGACTCTGTGACCAAACCCTGAAAAAA
CCTGCCGTGTGAGTAGGCTGGCGGGTGCGTAGGTTTCCTCTTTTCGCGCG
GGGGCCAATCGAACAGTACGGTACTTAAAGGTCGCGGGGGAAAGTATACC
GGACCACCACTATGAAACATTGCTATATTAGACTGTGATGATGCACGCCT
TCTCTTCGGGGCATTGTTCGATTCGAAGTTCTCTTGGTACGGCTACAATA
CAAGCATGGTGCCGGATGGCGTACACGTACTTAGCTGTGCAGTCATGCCC
CCCGGGAAACGGCCGATGGGCACAAGAGTAGTCGAGTTTGAATGAACAAG
ATTCATATGGGGTACCAAAGGGGCGATTCACTTCGCGCAGCGGGCGAGCG
GTTTGTGTCACGAACGAAACACGGGGGACATTGAACAGGGAATCATTCAG
GGAAGCGGCCAGGGGGGGGGGAGGTGGGCAGCGCCTGGACCGCCAAACAA
TTTGCATCACCAAGAAATGTGATGGTCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig895:17287..19966+

>mRNA_Ecto-sp13_S_contig895.20480.1 ID=mRNA_Ecto-sp13_S_contig895.20480.1|Name=mRNA_Ecto-sp13_S_contig895.20480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig895:17287..19966+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAAGGATGACGCGAAGCTCGTGGATGAAGTCTCTCGGCAGGCGAT
GTGGGCGGAGGTGATCAAGAAAGAGAACGCCACAATCGGTGTGCCCCACC
GGTTCTTCCTCAACCCCAACAAGTTGGTATTCATCGCTAGGAAGCCTACG
GAGGTTGATCCAAGGACGTACGAGGCGGACTCTTTGTCGACAGGGCATCA
AGGCTCCCTTGAGTCGCCTTCGCGCATCAGAGAGGCAGAGGAGGGCGATA
ACAGCGACGAAGCCACCCTTGACGCGGGTAGTGCTAAACTATGGAAAACG
GAATCCCAGCGATGGGGCAGCTTTTACCCCAAGAAGAGACCACCGGGGGT
GGATCCCTTTTGCTCGCAGCGAAGCTGCTGGAGGAAACCACGTTCGAAAT
GCGACGTCACAGAATATGGAGACAGGTTGGTCAGCGGGGACATAGACGAC
AAAGTTTCGTCCTGGTGCACTTCTGAAATACTGCCGCCCAATATGTACTT
GTTGCAAACCAAATGA
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