mRNA_Ecto-sp13_S_contig88101.20298.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig88101.20298.1
Unique NamemRNA_Ecto-sp13_S_contig88101.20298.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A6H5JZY6_9PHAE (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY6_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 3.320e-30
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1
Query:    1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 177
            R+CAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR
Sbjct:  344 RKCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 402          
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: D7FUR6_ECTSI (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR6_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 4.070e-30
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1
Query:    1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 177
            R+CAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR
Sbjct:  338 RKCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 396          
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A164VUW2_DAUCS (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A164VUW2_DAUCS)

HSP 1 Score: 65.5 bits (158), Expect = 4.950e-11
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIY 174
            R+CAE FA+  GKRS+++LEAE L G KLQG  TA E + V+ ++ C + FPL TT+Y
Sbjct:  274 RKCAEAFAKNGGKRSFDELEAEMLQGQKLQGALTAKEVYIVLSQRGCLQMFPLFTTVY 331          
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A251TVR0_HELAN (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=5 Tax=Asteraceae TaxID=4210 RepID=A0A251TVR0_HELAN)

HSP 1 Score: 64.3 bits (155), Expect = 1.320e-10
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIY 174
            RRCAE FA+  GKRS++ LEAE L G KLQG STA E + V+K K     FPL TT++
Sbjct:  282 RRCAEAFAKNGGKRSFDDLEAEMLQGQKLQGVSTAKEVYEVLKHKGWLEMFPLFTTVH 339          
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: C5KYJ9_PERM5 (Glycerol-3-phosphate dehydrogenase, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KYJ9_PERM5)

HSP 1 Score: 61.2 bits (147), Expect = 1.680e-10
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 177
            RRCAE FAR  GK+SWE +E+E LGG KLQG  T +E   V+      ++ PL   IYR
Sbjct:   36 RRCAEAFARADGKKSWEDIESELLGGQKLQGTLTLLEIVDVLADAPIKKELPLFAAIYR 94          
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A5A7PKZ6_STRAF (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PKZ6_STRAF)

HSP 1 Score: 62.8 bits (151), Expect = 4.620e-10
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIY 174
            R+CAE FAR  GKRS+++LEAE L G KLQG STA E + V+  +K    FPL +T++
Sbjct:  274 RKCAEAFARNGGKRSFDELEAEMLQGQKLQGVSTAKEVYEVLSHRKWLELFPLFSTVH 331          
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A2K1JCS6_PHYPA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JCS6_PHYPA)

HSP 1 Score: 62.8 bits (151), Expect = 4.880e-10
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 177
            R+ AE +AR  GKRS+++LEAE LGG KLQG  TA E F V+K +   +KFPL  T+++
Sbjct:  356 RKVAEAYARNGGKRSFDELEAELLGGQKLQGVLTAGEVFQVLKARNWEKKFPLFATVHK 414          
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A6I9UFB0_SESIN (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=3 Tax=Lamiales TaxID=4143 RepID=A0A6I9UFB0_SESIN)

HSP 1 Score: 62.0 bits (149), Expect = 8.680e-10
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIY 174
            RRCAE FAR  GKRS+++LEAE L G KLQG STA E + V++ +     FPL +T++
Sbjct:  274 RRCAEAFARNGGKRSFDELEAEMLQGQKLQGVSTAKEVYEVLRHRGWLELFPLFSTVH 331          
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A484JYT6_9ASTE (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484JYT6_9ASTE)

HSP 1 Score: 62.0 bits (149), Expect = 9.190e-10
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIY 174
            R+CAE FAR+ GKRS+++LEAE L G KLQG STA E + V++ +     FPL +T++
Sbjct:  465 RKCAEAFARDGGKRSFDELEAEMLQGQKLQGVSTAKEVYEVLRYRGWLESFPLFSTVH 522          
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A484MUK5_9ASTE (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MUK5_9ASTE)

HSP 1 Score: 62.0 bits (149), Expect = 9.200e-10
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIY 174
            R+CAE FAR+ GKRS+++LEAE L G KLQG STA E + V++ +     FPL +T++
Sbjct:  498 RKCAEAFARDGGKRSFDELEAEMLQGQKLQGVSTAKEVYEVLRYRGWLESFPLFSTVH 555          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZY6_9PHAE3.320e-3098.31Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
D7FUR6_ECTSI4.070e-3098.31Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A164VUW2_DAUCS4.950e-1153.45Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A251TVR0_HELAN1.320e-1056.90Glycerol-3-phosphate dehydrogenase [NAD(+)] n=5 Ta... [more]
C5KYJ9_PERM51.680e-1050.85Glycerol-3-phosphate dehydrogenase, putative n=1 T... [more]
A0A5A7PKZ6_STRAF4.620e-1053.45Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A2K1JCS6_PHYPA4.880e-1052.54Glycerol-3-phosphate dehydrogenase [NAD(+)] n=4 Ta... [more]
A0A6I9UFB0_SESIN8.680e-1053.45Glycerol-3-phosphate dehydrogenase [NAD(+)] n=3 Ta... [more]
A0A484JYT6_9ASTE9.190e-1051.72Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Ta... [more]
A0A484MUK5_9ASTE9.200e-1051.72Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig88101contigEcto-sp13_S_contig88101:389..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size162
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464153.9628036-UTR-Ecto-sp13_S_contig88101:388..4031681464153.9628036-UTR-Ecto-sp13_S_contig88101:388..403Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig88101 389..403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464153.9728377-CDS-Ecto-sp13_S_contig88101:403..5651681464153.9728377-CDS-Ecto-sp13_S_contig88101:403..565Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig88101 404..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig88101.20298.1prot_Ecto-sp13_S_contig88101.20298.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig88101 404..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig88101.20298.1

>prot_Ecto-sp13_S_contig88101.20298.1 ID=prot_Ecto-sp13_S_contig88101.20298.1|Name=mRNA_Ecto-sp13_S_contig88101.20298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLT
TIYR
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mRNA from alignment at Ecto-sp13_S_contig88101:389..565+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig88101.20298.1 ID=mRNA_Ecto-sp13_S_contig88101.20298.1|Name=mRNA_Ecto-sp13_S_contig88101.20298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88101:389..565+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAGATGCGCGGAGATGTTCGCCCGCGAAAGCGGTAAGCGCTCTTGGGA GCAGCTGGAGGCGGAGGAACTGGGGGGCATGAAGCTGCAGGGGCCCAGCA CAGCGGTCGAAGCGTTCGGCGTGATCAAGAAGAAGAAGTGCGCCCGGAAG TTCCCGCTCCTGACAACCATCTACCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88101:389..565+

>mRNA_Ecto-sp13_S_contig88101.20298.1 ID=mRNA_Ecto-sp13_S_contig88101.20298.1|Name=mRNA_Ecto-sp13_S_contig88101.20298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88101:389..565+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGCCCGCGAAAGCGGTAAGCGCTCTTGGGAGCAGCTGGAGGCGGA
GGAACTGGGGGGCATGAAGCTGCAGGGGCCCAGCACAGCGGTCGAAGCGT
TCGGCGTGATCAAGAAGAAGAAGTGCGCCCGGAAGTTCCCGCTCCTGACA
ACCATCTACCGG
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