mRNA_Ecto-sp13_S_contig88101.20298.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A6H5JZY6_9PHAE (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY6_9PHAE) HSP 1 Score: 118 bits (295), Expect = 3.320e-30 Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1
Query: 1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 177
R+CAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR
Sbjct: 344 RKCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 402
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: D7FUR6_ECTSI (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR6_ECTSI) HSP 1 Score: 118 bits (295), Expect = 4.070e-30 Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1
Query: 1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 177
R+CAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR
Sbjct: 338 RKCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 396
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A164VUW2_DAUCS (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A164VUW2_DAUCS) HSP 1 Score: 65.5 bits (158), Expect = 4.950e-11 Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIY 174
R+CAE FA+ GKRS+++LEAE L G KLQG TA E + V+ ++ C + FPL TT+Y
Sbjct: 274 RKCAEAFAKNGGKRSFDELEAEMLQGQKLQGALTAKEVYIVLSQRGCLQMFPLFTTVY 331
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A251TVR0_HELAN (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=5 Tax=Asteraceae TaxID=4210 RepID=A0A251TVR0_HELAN) HSP 1 Score: 64.3 bits (155), Expect = 1.320e-10 Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIY 174
RRCAE FA+ GKRS++ LEAE L G KLQG STA E + V+K K FPL TT++
Sbjct: 282 RRCAEAFAKNGGKRSFDDLEAEMLQGQKLQGVSTAKEVYEVLKHKGWLEMFPLFTTVH 339
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: C5KYJ9_PERM5 (Glycerol-3-phosphate dehydrogenase, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KYJ9_PERM5) HSP 1 Score: 61.2 bits (147), Expect = 1.680e-10 Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 177
RRCAE FAR GK+SWE +E+E LGG KLQG T +E V+ ++ PL IYR
Sbjct: 36 RRCAEAFARADGKKSWEDIESELLGGQKLQGTLTLLEIVDVLADAPIKKELPLFAAIYR 94
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A5A7PKZ6_STRAF (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PKZ6_STRAF) HSP 1 Score: 62.8 bits (151), Expect = 4.620e-10 Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIY 174
R+CAE FAR GKRS+++LEAE L G KLQG STA E + V+ +K FPL +T++
Sbjct: 274 RKCAEAFARNGGKRSFDELEAEMLQGQKLQGVSTAKEVYEVLSHRKWLELFPLFSTVH 331
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A2K1JCS6_PHYPA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JCS6_PHYPA) HSP 1 Score: 62.8 bits (151), Expect = 4.880e-10 Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 177
R+ AE +AR GKRS+++LEAE LGG KLQG TA E F V+K + +KFPL T+++
Sbjct: 356 RKVAEAYARNGGKRSFDELEAELLGGQKLQGVLTAGEVFQVLKARNWEKKFPLFATVHK 414
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A6I9UFB0_SESIN (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=3 Tax=Lamiales TaxID=4143 RepID=A0A6I9UFB0_SESIN) HSP 1 Score: 62.0 bits (149), Expect = 8.680e-10 Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIY 174
RRCAE FAR GKRS+++LEAE L G KLQG STA E + V++ + FPL +T++
Sbjct: 274 RRCAEAFARNGGKRSFDELEAEMLQGQKLQGVSTAKEVYEVLRHRGWLELFPLFSTVH 331
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A484JYT6_9ASTE (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484JYT6_9ASTE) HSP 1 Score: 62.0 bits (149), Expect = 9.190e-10 Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIY 174
R+CAE FAR+ GKRS+++LEAE L G KLQG STA E + V++ + FPL +T++
Sbjct: 465 RKCAEAFARDGGKRSFDELEAEMLQGQKLQGVSTAKEVYEVLRYRGWLESFPLFSTVH 522
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Match: A0A484MUK5_9ASTE (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MUK5_9ASTE) HSP 1 Score: 62.0 bits (149), Expect = 9.200e-10 Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 1 RRCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIY 174
R+CAE FAR+ GKRS+++LEAE L G KLQG STA E + V++ + FPL +T++
Sbjct: 498 RKCAEAFARDGGKRSFDELEAEMLQGQKLQGVSTAKEVYEVLRYRGWLESFPLFSTVH 555 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88101.20298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig88101.20298.1 >prot_Ecto-sp13_S_contig88101.20298.1 ID=prot_Ecto-sp13_S_contig88101.20298.1|Name=mRNA_Ecto-sp13_S_contig88101.20298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp MFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTback to top mRNA from alignment at Ecto-sp13_S_contig88101:389..565+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig88101.20298.1 ID=mRNA_Ecto-sp13_S_contig88101.20298.1|Name=mRNA_Ecto-sp13_S_contig88101.20298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88101:389..565+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88101:389..565+ >mRNA_Ecto-sp13_S_contig88101.20298.1 ID=mRNA_Ecto-sp13_S_contig88101.20298.1|Name=mRNA_Ecto-sp13_S_contig88101.20298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88101:389..565+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |