mRNA_Ecto-sp13_S_contig87710.20241.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig87710.20241.1
Unique NamemRNA_Ecto-sp13_S_contig87710.20241.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig87710.20241.1 vs. uniprot
Match: D7G271_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G271_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 6.460e-22
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 IVQLLLGEVPERSVFNQKGFVVSLKPYLALTQAVRQGDLVEFNRIVGE 144
            IVQLLLGEVPERSVFNQKGFVVSLKPYLALTQAVRQGDLVEFNRIVGE
Sbjct:  279 IVQLLLGEVPERSVFNQKGFVVSLKPYLALTQAVRQGDLVEFNRIVGE 326
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BLAST of mRNA_Ecto-sp13_S_contig87710.20241.1 vs. uniprot
Match: A0A835YND8_9STRA (Proteasome regulatory subunit C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-11
Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 IVQLLLGEVPERSVFNQKGFVVSLKPYLALTQAVRQGDLVEFNRIV 138
            IVQLLLGEVPER+VFN  G   +L PYL LTQAVR GDLVEFN  V
Sbjct:  326 IVQLLLGEVPERAVFNAAGMRAALAPYLQLTQAVRLGDLVEFNAAV 371
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BLAST of mRNA_Ecto-sp13_S_contig87710.20241.1 vs. uniprot
Match: A0A7S4HBA1_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4HBA1_GUITH)

HSP 1 Score: 65.9 bits (159), Expect = 1.350e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 IVQLLLGEVPERSVFNQKGFVVSLKPYLALTQAVRQGDLVEFNRIVGEVG 150
            IVQLLLGE+P+RS F+QKG + +LKPYL + QAVR GDL  F+R + E G
Sbjct:   48 IVQLLLGEIPDRSTFSQKGMIAALKPYLQICQAVRVGDLGAFHRAMQEHG 97
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BLAST of mRNA_Ecto-sp13_S_contig87710.20241.1 vs. uniprot
Match: A0A7S2FYH6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYH6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.130e-11
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 IVQLLLGEVPERSVFNQKGFVVSLKPYLALTQAVRQGDLVEFNRIVGE 144
            IVQLL+GEVPERS FN K +  +L PYL LTQAVR GDL+ FN  V E
Sbjct:  218 IVQLLMGEVPERSTFNHKEYRAALAPYLVLTQAVRAGDLLRFNAAVAE 265
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BLAST of mRNA_Ecto-sp13_S_contig87710.20241.1 vs. uniprot
Match: A0A151ZHB8_9MYCE (26S proteasome regulatory subunit S3 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZHB8_9MYCE)

HSP 1 Score: 66.2 bits (160), Expect = 2.180e-11
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 IVQLLLGEVPERSVFNQKGFVVSLKPYLALTQAVRQGDLVEFNRI 135
            IVQLL+GE+PERS+F+QK    SLKPYL LTQ VR GDLV F+++
Sbjct:  292 IVQLLMGEIPERSIFSQKNLRASLKPYLILTQTVRVGDLVSFHKV 336
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BLAST of mRNA_Ecto-sp13_S_contig87710.20241.1 vs. uniprot
Match: A0A7S2S1L3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1L3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.990e-11
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 IVQLLLGEVPERSVFNQKGFVVSLKPYLALTQAVRQGDLVEFNRIV 138
            IVQLL+GEVPER+VFNQ  F  +L PYLALT+AVR GDL++FN+++
Sbjct:  326 IVQLLMGEVPERTVFNQPEFRGALAPYLALTKAVRVGDLMQFNQVL 371
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BLAST of mRNA_Ecto-sp13_S_contig87710.20241.1 vs. uniprot
Match: L1I5U9_GUITC (26S proteasome regulatory complex, subunit RPN3 n=3 Tax=Geminigeraceae TaxID=589343 RepID=L1I5U9_GUITC)

HSP 1 Score: 65.9 bits (159), Expect = 2.990e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 IVQLLLGEVPERSVFNQKGFVVSLKPYLALTQAVRQGDLVEFNRIVGEVG 150
            IVQLLLGE+P+RS F+QKG + +LKPYL + QAVR GDL  F+R + E G
Sbjct:  331 IVQLLLGEIPDRSTFSQKGMIAALKPYLQICQAVRVGDLGAFHRAMQEHG 380
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BLAST of mRNA_Ecto-sp13_S_contig87710.20241.1 vs. uniprot
Match: L8GZ19_ACACA (Proteasome (Prosome, macropain) 26S subunit, non ATPase, 32, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZ19_ACACA)

HSP 1 Score: 64.3 bits (155), Expect = 1.040e-10
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 IVQLLLGEVPERSVFNQKGFVVSLKPYLALTQAVRQGDLVEFNRIVGEVG 150
            IVQLL+GE+PERSVF   G  V+L+PYL LTQAVR GDL  F+ +V   G
Sbjct:  291 IVQLLMGEIPERSVFRTSGLKVALRPYLKLTQAVRVGDLSAFHEVVKTFG 340
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BLAST of mRNA_Ecto-sp13_S_contig87710.20241.1 vs. uniprot
Match: F0Y1W5_AURAN (PCI domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1W5_AURAN)

HSP 1 Score: 63.5 bits (153), Expect = 1.940e-10
Identity = 27/51 (52.94%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 IVQLLLGEVPERSVFNQKGFVVSLKPYLALTQAVRQGDLVEFNRIVGEVGS 153
            +VQLL+GE+P+RS F+ +G    L+PYL LTQAVR+GDL+ +N++V + G+
Sbjct:  278 LVQLLMGEIPDRSAFDGEGMRGELEPYLKLTQAVRRGDLLAYNKVVADYGA 328
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BLAST of mRNA_Ecto-sp13_S_contig87710.20241.1 vs. uniprot
Match: A0A7S0Z039_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z039_9CRYP)

HSP 1 Score: 63.2 bits (152), Expect = 2.660e-10
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 IVQLLLGEVPERSVFNQKGFVVSLKPYLALTQAVRQGDLVEFNRIVGE 144
            IVQLLLGE+P+RS+F+QKG V +L+PYL + QAVR GDL  F++ + E
Sbjct:  352 IVQLLLGEIPDRSIFSQKGMVSALRPYLHIAQAVRVGDLGAFHKAMQE 399
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig87710.20241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G271_ECTSI6.460e-22100.00PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YND8_9STRA1.170e-1173.91Proteasome regulatory subunit C-terminal-domain-co... [more]
A0A7S4HBA1_GUITH1.350e-1162.00Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S2FYH6_9STRA2.130e-1166.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A151ZHB8_9MYCE2.180e-1166.6726S proteasome regulatory subunit S3 n=1 Tax=Tiegh... [more]
A0A7S2S1L3_9STRA2.990e-1167.39Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
L1I5U9_GUITC2.990e-1162.0026S proteasome regulatory complex, subunit RPN3 n=... [more]
L8GZ19_ACACA1.040e-1062.00Proteasome (Prosome, macropain) 26S subunit, non A... [more]
F0Y1W5_AURAN1.940e-1052.94PCI domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S0Z039_9CRYP2.660e-1060.42Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig87710contigEcto-sp13_S_contig87710:27..182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score95.9
Seed ortholog evalue5.9e-18
Seed eggNOG ortholog2880.D7G271
Preferred namePSMD3
Model size156
KEGG koko:K03033,ko:K03126
KEGG Pathwayko03022,ko03050,ko05169,map03022,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0005911,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008270,GO:0008541,GO:0009056,GO:0009057,GO:0009506,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046872,GO:0046903,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055044,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0090068,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Exons1
EggNOG free text desc.regulation of protein catabolic process
EggNOG OGsKOG2581@1,KOG2581@2759
Cds size156
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03021,ko03036,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464149.4345057-CDS-Ecto-sp13_S_contig87710:26..1821681464149.4345057-CDS-Ecto-sp13_S_contig87710:26..182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig87710 27..182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig87710.20241.1prot_Ecto-sp13_S_contig87710.20241.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig87710 27..182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig87710.20241.1

>prot_Ecto-sp13_S_contig87710.20241.1 ID=prot_Ecto-sp13_S_contig87710.20241.1|Name=mRNA_Ecto-sp13_S_contig87710.20241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
IVQLLLGEVPERSVFNQKGFVVSLKPYLALTQAVRQGDLVEFNRIVGEVG
S*
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mRNA from alignment at Ecto-sp13_S_contig87710:27..182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig87710.20241.1 ID=mRNA_Ecto-sp13_S_contig87710.20241.1|Name=mRNA_Ecto-sp13_S_contig87710.20241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87710:27..182+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGTTCAGCTCCTGCTCGGAGAGGTGCCAGAACGGTCGGTGTTCAACCA
GAAGGGCTTCGTGGTATCCCTCAAGCCCTACCTCGCCCTCACGCAGGCGG
TCCGACAGGGGGACCTCGTGGAGTTTAACCGCATCGTCGGGGAGGTGGGC
TCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig87710:27..182+

>mRNA_Ecto-sp13_S_contig87710.20241.1 ID=mRNA_Ecto-sp13_S_contig87710.20241.1|Name=mRNA_Ecto-sp13_S_contig87710.20241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87710:27..182+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGTTCAGCTCCTGCTCGGAGAGGTGCCAGAACGGTCGGTGTTCAACCA
GAAGGGCTTCGTGGTATCCCTCAAGCCCTACCTCGCCCTCACGCAGGCGG
TCCGACAGGGGGACCTCGTGGAGTTTAACCGCATCGTCGGGGAGGTGGGC
TCGTAG
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