mRNA_Ecto-sp13_S_contig8752.20225.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8752.20225.1
Unique NamemRNA_Ecto-sp13_S_contig8752.20225.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8752.20225.1 vs. uniprot
Match: D7G7Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z9_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.230e-25
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:  202 GLELAKVAQQYAQQQGVPLPSLSGKEHTMDDTTPGAFGRTQSRGGLDGLLERASSVL 372
            GLELAKVAQQYAQQQGVPLPSLSGKE TMDDT PGAFGRTQSRGGLDGLLERASSVL
Sbjct:   20 GLELAKVAQQYAQQQGVPLPSLSGKEQTMDDTMPGAFGRTQSRGGLDGLLERASSVL 76
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8752.20225.1 vs. uniprot
Match: A0A6H5JM82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM82_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.630e-25
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:  202 GLELAKVAQQYAQQQGVPLPSLSGKEHTMDDTTPGAFGRTQSRGGLDGLLERASSVL 372
            GLELAKVAQQYAQQQGVPLPSLSGKE TMDDT PGAFGRTQSRGGLDGLLERASS+L
Sbjct:   20 GLELAKVAQQYAQQQGVPLPSLSGKEQTMDDTMPGAFGRTQSRGGLDGLLERASSML 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8752.20225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7Z9_ECTSI1.230e-2596.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM82_9PHAE3.630e-2594.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8752contigEcto-sp13_S_contig8752:655..1477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score109.0
Seed ortholog evalue1.6e-21
Seed eggNOG ortholog2880.D7G7Z9
Preferred namePLSCR5
Model size373
KEGG koko:K04818
KEGG TC1.A.9.1
KEGG Pathwayko04080,map04080
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0000982,GO:0001077,GO:0001228,GO:0001300,GO:0001775,GO:0002237,GO:0002252,GO:0002376,GO:0002520,GO:0002526,GO:0002682,GO:0002684,GO:0002694,GO:0003674,GO:0003700,GO:0005102,GO:0005154,GO:0005215,GO:0005319,GO:0005488,GO:0005509,GO:0005515,GO:0005548,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006915,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006955,GO:0006979,GO:0007009,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007275,GO:0007568,GO:0007569,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009605,GO:0009607,GO:0009611,GO:0009615,GO:0009617,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010468,GO:0010506,GO:0010507,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0010646,GO:0010647,GO:0010821,GO:0010823,GO:0010876,GO:0010911,GO:0010912,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015711,GO:0015748,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0017121,GO:0017124,GO:0017128,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0019899,GO:0019904,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030168,GO:0031012,GO:0031224,GO:0031225,GO:0031226,GO:0031235,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032091,GO:0032496,GO:0032501,GO:0032502,GO:0032774,GO:0032781,GO:0033003,GO:0033036,GO:0033043,GO:0033500,GO:0033554,GO:0033993,GO:0034097,GO:0034599,GO:0034605,GO:0034641,GO:0034645,GO:0034654,GO:0035455,GO:0035456,GO:0035556,GO:0042060,GO:0042221,GO:0042398,GO:0042592,GO:0042593,GO:0042609,GO:0042632,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043462,GO:0043900,GO:0043901,GO:0043903,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045017,GO:0045069,GO:0045071,GO:0045088,GO:0045089,GO:0045121,GO:0045893,GO:0045935,GO:0045944,GO:0046474,GO:0046483,GO:0046486,GO:0046658,GO:0046872,GO:0048306,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048525,GO:0048534,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050817,GO:0050865,GO:0050878,GO:0050896,GO:0051098,GO:0051100,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0055088,GO:0055092,GO:0060255,GO:0060368,GO:0061024,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070782,GO:0070851,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071396,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090407,GO:0097035,GO:0097190,GO:0097193,GO:0097194,GO:0097659,GO:0098542,GO:0098552,GO:0098562,GO:0098589,GO:0098753,GO:0098805,GO:0098857,GO:0098916,GO:0099536,GO:0099537,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1902229,GO:1902231,GO:1902531,GO:1902533,GO:1902680,GO:1903146,GO:1903147,GO:1903506,GO:1903508,GO:1903900,GO:1903901,GO:2000112,GO:2000371,GO:2000373,GO:2001020,GO:2001022,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons2
EggNOG free text desc.phospholipid scrambling
EggNOG OGsKOG0621@1,KOG0621@2759
Cds size372
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464148.041242-CDS-Ecto-sp13_S_contig8752:654..8251681464148.041242-CDS-Ecto-sp13_S_contig8752:654..825Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8752 655..825 -
1681464148.0545733-CDS-Ecto-sp13_S_contig8752:1276..14771681464148.0545733-CDS-Ecto-sp13_S_contig8752:1276..1477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8752 1277..1477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8752.20225.1prot_Ecto-sp13_S_contig8752.20225.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8752 655..1477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8752.20225.1

>prot_Ecto-sp13_S_contig8752.20225.1 ID=prot_Ecto-sp13_S_contig8752.20225.1|Name=mRNA_Ecto-sp13_S_contig8752.20225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
SPSLPISGNFSRTRASCTAACFVAFLGFGCRGRGDPPPACPIILRGITWY
GKSKRANAMVGGSSLWNGLELAKVAQQYAQQQGVPLPSLSGKEHTMDDTT
PGAFGRTQSRGGLDGLLERASSVL
back to top

mRNA from alignment at Ecto-sp13_S_contig8752:655..1477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8752.20225.1 ID=mRNA_Ecto-sp13_S_contig8752.20225.1|Name=mRNA_Ecto-sp13_S_contig8752.20225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=823bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8752:655..1477- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCCCTCACTTCCCATAAGCGGTAATTTTTCTCGCACACGTGCCTCGTG
TACTGCTGCGTGCTTCGTAGCTTTTTTGGGTTTTGGATGTCGCGGCCGCG
GAGATCCACCCCCCGCTTGCCCAATCATCCTACGCGGCATTACCTGGTAT
GGCAAGAGCAAACGAGCAAACGCAATGGTTGGTGGTTCATCCTTGTGGAA
TGTAAGCCTGAGCCAGCGAAAACGCGGCATATCGCTCCGTCCCGGCGTTG
TAGCGATGCGAAGGCATTGGTGTAACGGCTACGGTATGCAACATCAGTAC
ACACCCACCCACCACCGCATGTTTCGAGCAGTTATGCGTAGGTTACGGTG
CGCCGCACACGAGCCCACCCACCCCCACATGTTTCGAGCAGCTGTGGGTA
GGTTGTGGTGCGCTGCACACGAGCTCGGCGGGGGGGCTTGCGGCACGAGA
GCTTGGGCGGTCAGCCACTGTCCCGTTCGCACTCTCTACGCGTGTACATT
GCCAGTACATCTTGTCGAGTCTGCGCTTTGATCCGGCAACTTAGTCTCAC
GTCCGCTCGTTCTTCTACTCTCCCAGTGCGGTGCGGGTTTTCTTGACGTT
GTTGCCTATGAAATCAATTGATCGCAGCCAATACCTACGACCTATCCACC
AGGGCCTCGAGCTGGCGAAGGTCGCCCAGCAGTACGCCCAGCAACAAGGC
GTCCCTCTCCCGAGTCTATCCGGCAAAGAGCATACGATGGACGACACGAC
GCCCGGAGCTTTCGGCAGGACGCAAAGCCGCGGAGGCTTGGACGGCTTGC
TCGAGCGCGCGTCTTCCGTGCTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8752:655..1477-

>mRNA_Ecto-sp13_S_contig8752.20225.1 ID=mRNA_Ecto-sp13_S_contig8752.20225.1|Name=mRNA_Ecto-sp13_S_contig8752.20225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8752:655..1477- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCCCTCACTTCCCATAAGCGGTAATTTTTCTCGCACACGTGCCTCGTG
TACTGCTGCGTGCTTCGTAGCTTTTTTGGGTTTTGGATGTCGCGGCCGCG
GAGATCCACCCCCCGCTTGCCCAATCATCCTACGCGGCATTACCTGGTAT
GGCAAGAGCAAACGAGCAAACGCAATGGTTGGTGGTTCATCCTTGTGGAA
TGGCCTCGAGCTGGCGAAGGTCGCCCAGCAGTACGCCCAGCAACAAGGCG
TCCCTCTCCCGAGTCTATCCGGCAAAGAGCATACGATGGACGACACGACG
CCCGGAGCTTTCGGCAGGACGCAAAGCCGCGGAGGCTTGGACGGCTTGCT
CGAGCGCGCGTCTTCCGTGCTA
back to top