mRNA_Ecto-sp13_S_contig8732.20198.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8732.20198.1
Unique NamemRNA_Ecto-sp13_S_contig8732.20198.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8732.20198.1 vs. uniprot
Match: D7FSA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA4_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 6.210e-55
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 2 
Query:    2 RAMSLVPAVGLFLGNLVCMCLSLVESATNRQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFMSLCVTFAKARWVADGAF 295
            RAMS+VPAVGLFLGNLVCMCLSLVESATN+QKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFMSLCVTFAKARWVADGAF
Sbjct:   87 RAMSMVPAVGLFLGNLVCMCLSLVESATNKQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFMSLCVTFAKARWVADGAF 184
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BLAST of mRNA_Ecto-sp13_S_contig8732.20198.1 vs. uniprot
Match: A0A6H5JEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE0_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 3.630e-52
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 2 
Query:    2 RAMSLVPAVGLFLGNLVCMCLSLVESATNRQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFMSLCVTFAKARWVADGAF 295
            RAMSLVPAVGLFLGNLVCMCLSLVESATNRQKARMKTML+VDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVF+SLCVTFAKARWVADGAF
Sbjct:  286 RAMSLVPAVGLFLGNLVCMCLSLVESATNRQKARMKTMLSVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFLSLCVTFAKARWVADGAF 383
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BLAST of mRNA_Ecto-sp13_S_contig8732.20198.1 vs. uniprot
Match: A0A7S2AAP3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AAP3_TRICV)

HSP 1 Score: 63.2 bits (152), Expect = 1.080e-7
Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 2 
Query:    2 RAMSLVPAVGLFLGNLVCMCLSLVESATNRQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFMSLCVTFAKARWVADGA 292
            R + +VP V LF+ N+   C++ V S T+  K RMK +L ++ + E  L  YN+L L    S  +P+E +VGR LTN +F+  C  F +  W A  A
Sbjct:  152 RLLFVVPTVLLFVLNMAG-CVASVTSPTHGAKKRMKAILNLNKLSESALFAYNILRLTAAPSKYIPREIYVGRTLTNFLFLVQCQLFTRVTWGAAQA 247
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BLAST of mRNA_Ecto-sp13_S_contig8732.20198.1 vs. uniprot
Match: A0A7S4K0A4_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K0A4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.450e-7
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 2 
Query:    2 RAMSLVPAVGLFLGNLVCMCLSLVESATNRQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFMSLCVTFAKARWVA 283
            R + +VP V LF+GN+   C++ V S ++  K RMK +L ++ + E LL +YN++ L    S  V +E +VGR L+N +FM  C  F +  W A
Sbjct:  132 RLLFVVPTVALFIGNMAG-CVASVTSPSHSAKKRMKAILNLNKLIELLLFIYNVVRLTIFPSKFVQREIYVGRTLSNFIFMVQCQLFTRVTWGA 224
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BLAST of mRNA_Ecto-sp13_S_contig8732.20198.1 vs. uniprot
Match: A0A7S3V6B4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6B4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.260e-5
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:    2 RAMSLVPAVGLFLGNLVCMCLSLVESATNRQKARMKTMLTVDAVCEGLLLVYNML-LLLGGASGLVPKEEFVGRILTNVVFMSLCVTFAKARW 277
            R + + P V LF+ N+   C+  V S+ +  K RMK +L ++ + E  L+ YN+L LL+   + L+P+E +VGRIL+N +F+  C  F K  W
Sbjct:  191 RLIMVFPPVILFIANMAG-CVGSVMSSGHLGKKRMKAILNLNKLMEITLMAYNVLCLLIRTPTKLIPREIYVGRILSNFLFLVQCQLFTKVSW 282
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8732.20198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FSA4_ECTSI6.210e-5597.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEE0_9PHAE3.630e-5297.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2AAP3_TRICV1.080e-738.14Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4K0A4_9STRA1.450e-738.30Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S3V6B4_9STRA1.260e-537.63Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8732contigEcto-sp13_S_contig8732:4735..6377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score183.7
Seed ortholog evalue4e-44
Seed eggNOG ortholog2880.D7FSA4
Model size1112
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG OGs2E9MT@1,2SFZ0@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004780.1
Cds size291
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464145.8662112-UTR-Ecto-sp13_S_contig8732:4734..55481681464145.8662112-UTR-Ecto-sp13_S_contig8732:4734..5548Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8732 4735..5548 -
1681464145.9000123-UTR-Ecto-sp13_S_contig8732:6370..63771681464145.9000123-UTR-Ecto-sp13_S_contig8732:6370..6377Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8732 6371..6377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464145.8768594-CDS-Ecto-sp13_S_contig8732:5548..57071681464145.8768594-CDS-Ecto-sp13_S_contig8732:5548..5707Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8732 5549..5707 -
1681464145.88604-CDS-Ecto-sp13_S_contig8732:6238..63701681464145.88604-CDS-Ecto-sp13_S_contig8732:6238..6370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8732 6239..6370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8732.20198.1prot_Ecto-sp13_S_contig8732.20198.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8732 5549..6370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8732.20198.1

>prot_Ecto-sp13_S_contig8732.20198.1 ID=prot_Ecto-sp13_S_contig8732.20198.1|Name=mRNA_Ecto-sp13_S_contig8732.20198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MSLVPAVGLFLGNLVCMCLSLVESATNRQKARMKTMLTVDAVCEGLLLVY
NMLLLLGGASGLVPKEEFVGRILTNVVFMSLCVTFAKARWVADGAF*
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mRNA from alignment at Ecto-sp13_S_contig8732:4735..6377-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8732.20198.1 ID=mRNA_Ecto-sp13_S_contig8732.20198.1|Name=mRNA_Ecto-sp13_S_contig8732.20198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1643bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8732:4735..6377- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCGATGTCTTTGGTACCGGCGGTGGGCCTGTTCTTGGGAAACCTGG
TGTGCATGTGCCTCTCGCTGGTGGAGTCGGCCACCAACAGGCAGAAGGCC
AGGATGAAGACGATGCTTACCGTCGATGCCGTGTGCGAGGTTAGTTGTCC
ATCATTGTTGTCGTTGTTGTTTATCACTGTTGTGATTGCGTTGTTGATGT
TGTTTGTCGTCGTTGTTGGATGTGATTGCGTGTTGTTCATCGTTGCTGTT
GCCATTGATGTGATTGCGTTGTTGTTGCTCTATCGCTGTCATTGTTGTGA
TATTGTTGGTTTTCGTTGTTTATGTACCGGTATCGTGCTTGTGATTGTTT
TTGTTGTTGTTTATGTCATCCTCACGGTAAAAACCGTTCCGATCTCTGCT
CAGTACCTTCTAGCGTCCGTAGGACTGGTCCAACTGACGCGGACGCCTTC
CGCGGTGACCGGCTAACTAGTTATTTGGGTACCATACGAACAGAGAAATT
GAAGGACATGAAAAAAGTTTTTTTTTCAGAGTTTTTTTTCTTGTTTTTCT
TCAGTGCTTGGCAGAGACTTTTTTTTCTCCTTTTTTTTCAGTTACTTTGC
TTGGCAGAGACATTATGGGCAAGAAGCCTCGATGCTCACCCCCCCTGCCC
TCTTCTTTTTGTTTTGTCAGGGGTTACTGCTGGTGTACAACATGCTGCTG
CTGCTGGGCGGCGCGTCGGGGCTAGTGCCGAAGGAAGAGTTCGTCGGCCG
CATCCTCACCAACGTCGTGTTCATGTCCCTCTGCGTCACCTTCGCCAAGG
CCCGATGGGTGGCGGACGGCGCGTTCTGATAGGCTGATTCGTCGGTCTGA
CCGAGGCGGCGGCGGCAGGCAGTGCTGGCCGTTGATTGGTCAACGTCTTC
TCGGTAAAGGAAAGCGGGTGAATGACTGATGGTTCGGAGGGCTAGCATGG
CCTGGCCAAGGTCAATGTTGACCGGTGATTAGTCAAACGTTTTGTCGGGA
AAAGGGAAGGCGGGCGTACGTTGTGCCCCGTCGCTGTGCGGCAAGAGTCG
GAGGAGTTCTTCCGCTCTAAATTGTGCTTGATTCCGGTCAAAGATAAAAG
TCCAAAGCAATTCCTACGTACTTTCTCGAAAACAGCGGGACCTAGTGCAC
GACGGGCGGTTGGGGGGGAGGGTAACGCAAAATAGGCGGTGCTGTGGAGT
GATTCGGATCAGGCAGCGCTTCCGACTACGTATCTTTATTTTGTGTCTCT
TGTGTTTTTTTTTCTCTCCTTTTTTATCTTTAGTTTCTTGTGCGGAAACT
CGCCGAAGAGCCACAGGCTAATGTTTCCGGTGTTGAGGCAGCTGTGATTC
TGGATGAGGTTTGTATGTGAGCGACCCTACCCCCACCCCGTCTACACACA
CGGGGAGAGGGTCTGTCTCTGGTGCTGTTGTCGGTGGATCTGTCAGTCTT
TGTGCTGCTGCGGAATGTTGCAAGACCTGGTGCTTGAGTTTGTTTATTGT
CAAACGACGGTTTTCATTCGGCCCGATCGGGGTCGCTTGATTTTCATCGA
TCGGTTGGTTACATTATTGCGGTAACGGTAGAAGAGCCGATATGCAGTAG
TCGGTGAGACTCGGCTGGCTCCGTGGTTGAAGACCAAGGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8732:4735..6377-

>mRNA_Ecto-sp13_S_contig8732.20198.1 ID=mRNA_Ecto-sp13_S_contig8732.20198.1|Name=mRNA_Ecto-sp13_S_contig8732.20198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8732:4735..6377- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTTGGTACCGGCGGTGGGCCTGTTCTTGGGAAACCTGGTGTGCAT
GTGCCTCTCGCTGGTGGAGTCGGCCACCAACAGGCAGAAGGCCAGGATGA
AGACGATGCTTACCGTCGATGCCGTGTGCGAGGGGTTACTGCTGGTGTAC
AACATGCTGCTGCTGCTGGGCGGCGCGTCGGGGCTAGTGCCGAAGGAAGA
GTTCGTCGGCCGCATCCTCACCAACGTCGTGTTCATGTCCCTCTGCGTCA
CCTTCGCCAAGGCCCGATGGGTGGCGGACGGCGCGTTCTGA
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