mRNA_Ecto-sp13_S_contig873.20195.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig873.20195.1
Unique NamemRNA_Ecto-sp13_S_contig873.20195.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig873.20195.1 vs. uniprot
Match: A0A6H5JYI5_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI5_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 1.910e-98
Identity = 198/220 (90.00%), Postives = 206/220 (93.64%), Query Frame = 3 
Query:  189 MFFSRRTALSVVVAATALLVPDHVSLAATTTDQDTTGTTVTATSMEPTGTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSTMEEDDEPGGSYEDCDFSFAGDGKCHEDLNTEVCGYDGGDCCSCTCEPGDFNCGGEYNCIDPEAVCVEDDDGDGGELTTAELEDDGITDEMADDARTADDDTSAAGTTSLSSMVIGVATAAGAASVFAAHTAL 848
            MFFSRRTALSVVVAATALL PDHVSLAATTTDQDTTGTTVTATSMEP     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +TST+EEDDEPGGSYEDCDFSFAGDGKCHEDLNTEVCGYDGGDCCSCTCEPG FNCGG+YNCIDPEAVCVEDDD DGGE+TTAELEDDGITDEMADDARTADDDTSA+GTTS SS+V G+ATAAGAA VFAA+ AL
Sbjct:    1 MFFSRRTALSVVVAATALLAPDHVSLAATTTDQDTTGTTVTATSMEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPTTSTLEEDDEPGGSYEDCDFSFAGDGKCHEDLNTEVCGYDGGDCCSCTCEPGAFNCGGDYNCIDPEAVCVEDDDEDGGEMTTAELEDDGITDEMADDARTADDDTSASGTTSFSSIVTGIATAAGAAYVFAAYIAL 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig873.20195.1 vs. uniprot
Match: A0A6H5L262_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L262_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 9.910e-12
Identity = 35/58 (60.34%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:  495 DFSFAGDGKCHEDLNTEVCGYDGGDCCSCTC-EPGDFNCG-GEYNCIDPEAVCVEDDD 662
            D S  GDG C  D+N   CGYDGGDCC CTC   G++ CG G Y CIDP A CV DDD
Sbjct:   43 DESAVGDGNCDRDINFAECGYDGGDCCECTCVAEGEYECGAGGYACIDPAAECVNDDD 100
[Close]
BLAST of mRNA_Ecto-sp13_S_contig873.20195.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.370e-10
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 3 
Query:  453 MEEDDEPGGSYEDCDFSFA-GDGKCHEDLNTEVCGYDGGDCCSCTCE---------PGDFNCGGEYNCIDPEAVCVEDDD 662
            +++DD     +E+CD++ + GDG C E  N E CGYDGGDCC CTCE           D++C  E++CIDP A CV DDD
Sbjct:   80 VDDDDITVDMFENCDYALSVGDGWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCR-EFSCIDPNAACVSDDD 158
[Close]
BLAST of mRNA_Ecto-sp13_S_contig873.20195.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.880e-10
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 3 
Query:  459 EDDEPGGSYEDCDFSFAGDGKCHEDLNTEVCGYDGGDCCSCTCE---PGDFNCGGEYNCIDPEAVCVEDDD 662
            +DD   G +EDC F+F GDG C++  N E CGYDGGDCC CTC      +F C  E+ CIDP A CV+DDD
Sbjct:   48 DDDVTEGMFEDC-FNF-GDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCT-EFACIDPTAPCVDDDD 115
[Close]
BLAST of mRNA_Ecto-sp13_S_contig873.20195.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.250e-10
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:  453 MEEDDEPGGSYEDCDFSFA-GDGKCHEDLNTEVCGYDGGDCCSCTC--EPGDFN------------CGGEYNCIDPEAVCVEDDD 662
            +E+DD      E+C +    GDG CHE+ N E+CGYDGGDCC CTC   P D +            CGG + CIDP A CV+DD+
Sbjct:  121 VEDDDITADMVENCGYVRGLGDGWCHEENNNELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGGGFACIDPSAACVDDDE 205
[Close]
BLAST of mRNA_Ecto-sp13_S_contig873.20195.1 vs. uniprot
Match: D7G397_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G397_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.200e-9
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:  136 GKRLPGSRTSVPHFITASCSSPDEQRFRSWWQQPRFSYLTTLA 264
            G+RLP SR SVP   TASCSS DEQR  SWWQQP FS+ TTLA
Sbjct:   98 GERLPDSRISVPQITTASCSSLDEQRCWSWWQQPHFSHPTTLA 140
[Close]
BLAST of mRNA_Ecto-sp13_S_contig873.20195.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.310e-9
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 3 
Query:  483 YEDCDFSF-AGDGKCHEDLNTEVCGYDGGDCCSCTCEPGDFNCGGEYN--CIDPEAVCVEDD 659
            ++ CD +   G+G+C+   N E CG+DGGDCC CTCE G++ CG  Y   CIDP+A CV+DD
Sbjct:   89 FDACDAAQDIGNGRCNMGNNIEECGFDGGDCCECTCEDGEYTCGQYYGYACIDPDATCVDDD 150
[Close]
BLAST of mRNA_Ecto-sp13_S_contig873.20195.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.320e-9
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 3 
Query:  447 STMEEDDEPGGSYEDCDFSFAGDGKCHEDLNTEVCGYDGGDCCSCTC-----EPGDFNCGGEYNCIDPEAVCVEDDD 662
            S +++DD      ++CD    GDG C +D N E+CGYDGGDCC CTC     +  D+ C     CIDP+A CV+DDD
Sbjct:   58 SCVDDDDITVEIAQNCDTWGLGDGWCDQDNNNEICGYDGGDCCECTCVSPWDDDDDWACRNYNACIDPDAPCVDDDD 134
[Close]
BLAST of mRNA_Ecto-sp13_S_contig873.20195.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.680e-9
Identity = 37/85 (43.53%), Postives = 47/85 (55.29%), Query Frame = 3 
Query:  441 STSTMEEDDEPGGSYEDCDF-SFAGDGKCHEDLNTEVCGYDGGDCCSCTCEPGDFN----------CGGEYNCIDPEAVCVEDDD 662
            S   +++DD      E+C +    G+G C E+ N E CGYDGGDCC CTC+P D +          CG  + CIDP A CV DDD
Sbjct:  107 SAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFACIDPNAPCVNDDD 191
[Close]
BLAST of mRNA_Ecto-sp13_S_contig873.20195.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.190e-9
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 3 
Query:  459 EDDEPGGSYEDCDFSFAGDGKCHEDLNTEVCGYDGGDCCSCTCE---PGDFNCGGEYNCIDPEAVCVEDDD 662
            +DD   G +EDC F+F GDG C++  N E CGYDGGDCC CTC      +F C  E+ CIDP A CV+DDD
Sbjct:  197 DDDVTEGMFEDC-FNF-GDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCT-EFACIDPTAPCVDDDD 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig873.20195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYI5_9PHAE1.910e-9890.00LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L262_9PHAE9.910e-1260.34LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB04_9PHAE1.370e-1047.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSR3_ECTSI3.880e-1054.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE5.250e-1045.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G397_ECTSI1.200e-972.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEP6_ECTSI1.310e-951.61Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5JXR2_9PHAE1.320e-946.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0S4_ECTSI1.680e-943.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJK5_9PHAE2.190e-954.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig873contigEcto-sp13_S_contig873:2365..10090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1639
Hectar predicted targeting categorysignal peptide
Exons6
Cds size663
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig873.20195.1prot_Ecto-sp13_S_contig873.20195.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig873 6614..9302 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464145.5719717-UTR-Ecto-sp13_S_contig873:2364..24921681464145.5719717-UTR-Ecto-sp13_S_contig873:2364..2492Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig873 2365..2492 +
1681464145.5832005-UTR-Ecto-sp13_S_contig873:6553..66131681464145.5832005-UTR-Ecto-sp13_S_contig873:6553..6613Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig873 6554..6613 +
1681464145.6532912-UTR-Ecto-sp13_S_contig873:9302..100901681464145.6532912-UTR-Ecto-sp13_S_contig873:9302..10090Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig873 9303..10090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464145.593816-CDS-Ecto-sp13_S_contig873:6613..67121681464145.593816-CDS-Ecto-sp13_S_contig873:6613..6712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig873 6614..6712 +
1681464145.6108067-CDS-Ecto-sp13_S_contig873:7091..73561681464145.6108067-CDS-Ecto-sp13_S_contig873:7091..7356Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig873 7092..7356 +
1681464145.6212728-CDS-Ecto-sp13_S_contig873:8239..82771681464145.6212728-CDS-Ecto-sp13_S_contig873:8239..8277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig873 8240..8277 +
1681464145.6323915-CDS-Ecto-sp13_S_contig873:8526..86321681464145.6323915-CDS-Ecto-sp13_S_contig873:8526..8632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig873 8527..8632 +
1681464145.642773-CDS-Ecto-sp13_S_contig873:9147..93021681464145.642773-CDS-Ecto-sp13_S_contig873:9147..9302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig873 9148..9302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig873.20195.1

>prot_Ecto-sp13_S_contig873.20195.1 ID=prot_Ecto-sp13_S_contig873.20195.1|Name=mRNA_Ecto-sp13_S_contig873.20195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
MFFSRRTALSVVVAATALLVPDHVSLAATTTDQDTTGTTVTATSMEPTGT
TSTGTTDTATSMEPTGTTPTETTDSTTSMEPTDTSTSTMEEDDEPGGSYE
DCDFSFAGDGKCHEDLNTEVCGYDGGDCCSCTCEPGDFNCGGEYNCIDPE
AVCVEDDDGDGGELTTAELEDDGITDEMADDARTADDDTSAAGTTSLSSM
VIGVATAAGAASVFAAHTAL*
back to top

mRNA from alignment at Ecto-sp13_S_contig873:2365..10090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig873.20195.1 ID=mRNA_Ecto-sp13_S_contig873.20195.1|Name=mRNA_Ecto-sp13_S_contig873.20195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig873:2365..10090+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTATTTCCACGCGCACACCTCGAGCACATCACTGCTCCTTGTCCTTG
ACGGCGAGGACACGTCTAGCGCCGATCATCCGGCCGCGTCGCAGCTGGTA
CTGACGCCCTTCTTCTTTCGCCGAAGAGGTGGGTAAAACTGTGTGAAAAG
CGTTCGCATCCGCGTGGATGGGTGTGGTTGTGTGGTCCGAACTGACAGAA
AATGCCTCTCAGCTCGTAGCCACCTGACGCAAAAAATCGGCGATATACAC
AAGCCGCGCTTGGACCCCCCCTCGCCCCTCCTGCTGTTGCCTGGTACCTC
TGTACGTCGGCGGCTGCCTCCATCTCTCTCATGCTGTCTTACTTCTCTCC
TTGGCTGATGCTATGGCGATGCGTCTGCCACATGTGCAGCAAGCAATATA
TGTATAGTGTTGAGGACAACTTGCGGAAACGACAGGCGATTCCGAGCCCC
AACATCCGTTCCTTCAACGGCCCAATCGTGAAGGTCCTCGCCGCGTTCTA
TGTGCGGCTGGGACCTGCGACTCCCTTGTTACGAAATGATGTTCGCATAC
AGTGTTCGACGGCGACCGCGACTTACTACACTGATACCTTTCTAAACTCG
TCGTGCTCTCTCGGCGTGGCGGCTAGCCTGACAGTCCCGTCAACCAACCG
CCAAGCCGCCAACCCTACAATCCTACAATGAAGCCGAGACGCGATGAACC
TTGCGGGCACCAATCGCTTCTGGAGTGCCATCAGATCGGGGCCGTGCTAT
AGCTTTCAGCCCCCAAGCGGAGATCTCGTCCATGTATTTGCGGGGTGTAG
CGAATCCATATTAAACGATCGGCATGGCAACATGCGGCCTGCACGAGAAT
AATACTTTTTGAACATATGTGCTGTAGGCTCTGTAGACTAGACTAGTCTT
TTCGTAGAATACAAGATTGTAATCCCTCCCGGGGTGTGGGATCACGAGGC
CTACAGCATTGTAGTGCCAAAATCAGGCAGCACCAGCTCGCAGCTGCCAG
CTGGCTGCCAGCTGCCAGTTGATTTGTGACGTTTCCCAAGTTCAAAAGCT
CACACAGCTGAGGTTTTATTACTCGGAAACTGTCGGCGAACCTCCACGAA
GCTTTTTTTTTCAAATGTTTATCTACGCGAAGAACGTAGTCGTGGAATAT
TGCGAACACACCAATCCCTTCTGTTTTTGCATTAAGCGGGAAACCAGTTG
TGCGGTGCTATGAAGCTATCAGCCTTCCTCCCCTAGCGGTGATCTCGTCA
ATATTTAGCGAAAATATTTGAAACGACGCGGTACACGCTTTTTACCACAC
AAATATTTGAAACGACGCGGTACACGCTTTTTACCACACACAGCAGTAGA
ATAAACATGCTGCAGTACCTCGTAACCAGCTGTATGTACCAGACATCTGT
TGTACTACGATGTACCTCGCGTTTTTCGTCATCCATCAGTCGTCGTCACC
TATTTCGAAGTTCATTTAAATAGTAGCATGCATACCTGCTAGAGAGATCT
ATCAGTGCACTGGACCGTAGCGACGTACGTCAGGCGTACCTACCTGTGGT
TGGCAGAGGTTGTGCGATCCGTCTACACAAGAGGGTCTCGCAGGCTACTG
CTGTACGGATAATGTAGTATCCACACCTGGTGCCAGGTATGTATGATGCA
GGGTGGTATGGTAAGCATGCATACCCTCCTTCCGCTAAAACGCACGACGA
GGTACTACCACTGCTGTAGCAGCGTGTCTTGACACCCCGAACATAATGAC
GGCGTAATCTAACTACAGGCAGCTAGATTTATTGTTGTCTATACCACAGC
TGCTACATATTTTGTATTACGTCATCTTGTCCACACGCACACGTTTTCGT
ACCATTTTGGACGCACCAGCAGGCAGGGTGACGTACCGTGCAGCTCCGGA
AAAAAAAAAAGTAGATGTTTGTCCCGGACTCTTATTCTGTGGAGAGTTTA
AGTTGTTGTGTTTTTTACATCATCACCTGGAGTAGCCCCGTGCCACGAAG
TCAACCTCCTCTGGTGGCTCGTGGGACGGTTGCTCTCTTGGCATTTTGAC
CGGTTCCGATCCCTGTTAAATGCCTTCTGACATTCGTACTGGTCCAACGG
ACGCCTTGCTTGAGGCTAACTTCCAAAAGGGTACCACATACGACATAAGA
ACACAGCCGCGGAAATAACATCTTGGCGATAAAGAACTCATCTCTGATGG
TTTTGTTCTGTGGGGGAATGTTGTCTTGTGTAGCCCGGGTGATGGTTTGC
ATCTCGCGAGAGCCATGAAGGGTGTGTGATAACCAGGTGGTGTGACGTCA
ATGCCGCAAACTCGCAGGAACCCGAGGAGTGTGGTATGGTACGTACTGTA
ATATAGGAGAGTGTTTTGCCCACATCGGTACCTCCTCGACCTACTGTTTC
CTCACCACCTGGCTGTCTCTCTCCTGTTGAAACTCGCCAGTGTTGGGTGA
CACAAGACGTCTCATGTATTATTGAACACTCGCTACGAGAGTACAACCCA
AATATAGACGTCCCTGCTTTATTCGGTCATATACGAACCCGTCAATCACT
TGCTCTCTCGCACAACCAGCTCGGACAAACGCAGTTTTAGCCTTACCAAG
AGACTGAGCTGCAAGCAGTACCCCAACTCATGCGAAATCTCTTGGTCGAA
AAGTTTGATGTCCGGAGCAAGATCTGGCTTCTACATTTATTCTATGAGGA
ACATAATTACCATCTCGACACGGTCGGGCGTCATTACCCGCCAAGGATGG
TTGTACACGAACCCCAGCCACGAAACCCCCTCAATCTCTTACAATATTTG
CACCTTCAGGTAGCAGTGCTGTCAATTGTCAGCACAAATGTGTTCGTGGT
GTGTGTGGAGGGGCGGCACGCAGGTGCGCATCGTTTTTCTGCGTAAGCCC
GTGCACACACATCACGTTTTGCTTAAGACTCGCGCTGTGGAAAAACCGTG
ACTCCGTAGAAAATCGGCGGTATTACGGTTTCAACCGTAGAGTGTGTCGG
AGTACCTCAAACGGCTCCGCAAGAAACCGCCTGTACGGATTGTTGGGAAA
CCGTACGGAACAGGGCGGAGCGGTATATCCGAGAACAAGATTCTCAAGGA
GCGGAGCAGCTTATCCGAGGACAAGATTTCCAAGGAGCGGAACAGCTTGG
TCATTTCACCAAGCAGAGCGGAATGACTTTTTCCACCCGTGATCAACCCT
AAAAAAAAATTGGCACTGGGTTTTGTGTGGTGAATGATTTCTTATGCGTT
TGTGTTATCTTATGTCGTATGCCCCATGTGCATGTACATGAACATAATGC
AAACTAAACAACCCGGGCCGACAAATGACCGCAACTGACGGAATGATGCT
ACTATGTAGAAGACAACGGCAGTGCGTACCAGTAGAGTACCGTGTACGAG
ATAACATAATACGCCCGCATAAGAAAGACCCCCAAACAGCATATAACACC
CGGTGCTATTTTTGATCTCAACCAAGGAGCCGAAGAAATACCCTGGTTAC
GTAAGATATCACACCCTATGAGGTCAGGACGTATGTTCACGGAGCCCATG
CTGCTATCATCCCGGTGATGACGCACAACACAAAATGACCCCTGATGGCA
GACAGAAAGTGGCCCAGAGGGAAACATAAGCAATGCGCCCCGTACGGTTC
TTCACCGCGAACTGAAAACATTTTTGTCCTCAGCCTTCCAGGAGGACTCT
CGTTTATTCTAGCAGGCGGTAATAGTGACGGATGAAACTATATTTCATTA
CATGGCAAGACTGTCGCCGTGGTGGAGAGAGCCCTGTTGGCGCTCATTGC
CGGGGGCATGTGATCATCACCTCACCCCCCAGCCTGGATGCCCAATCAAC
CCGCGTCACATCTGGTTCATCCTTGTCAAACGTGGAAGCCTGGGCCGGCG
AAACCTGGCATATCGCGCCGTCCCGGCATTGTAGAGCCCGGCAGTGTAGA
GATGCGCCGTCAATGCTCTGTCGATGCAATTGCAAGGCGTTCCACAAGCT
TATGTGTGCAGAGCAGGAAGTTCAGAATCTGTGAGTTCTTGAGTGCGTAA
GTGCGTCTGTCGGCGGTGTGCTCGGGATGGGTGGGTGCCATTTTTTATCC
CCGCTGATGCTCCGCTGCCCTGTTCATCTTCCCTGTGTTTCCTCAACACC
TACGGTGCCTTTCCTCTGCGCTCCTACGAACTACCTCAGACAAACAGGCA
AGCGCCTTCCGGGCAGTCGAACCTCCGTTCCGCATTTCATAACGGCATCA
TGTTCTTCTCCAGACGAACAGCGCTTTCGGTCGTGGTGGCAGCAACCGCG
CTTCTCGTACCTGACCACGTTAGCTTAGCCGCCACGACAACCGACCAGGT
ACTTGAAGTTAGCGTGAAGGAGTTGTGTGGTGTTTTGCCTTTTGGTCCGA
AAGGCTCTCCATCTGTGTGTGCGCCGTTTCGTAGCATGCCATCATCAACG
AATGTTGTCGTTGTTGTGGGGTCTGATTGCCCTTGGAGAAGCAAAACGCG
CCGTGGTGCCCGCAGAAGGGGTTCCGCACGGTCAATCCGTTTTCCAAGGA
ACACAGAAGAGTCGAAACGAGGACCCCGTCCTTGACTCCCTCGGCTCTGT
CACTCTCTCGTTGTCCCCTCTTTCACGGTCCCTATTTTCATCGACGTACG
ATTTGCTGACTCACAACTATCACGCCAAGTTTGGTGCGCGTACCATAAAT
TTTTGTTGCTGTGGCACAATCGAACAGGACACAACAGGAACGACAGTTAC
CGCCACATCAATGGAACCAACCGGCACCACGTCAACGGGGACAACTGATA
CCGCCACGTCAATGGAACCAACCGGCACCACGCCAACGGAAACAACTGAT
AGCACCACGTCCATGGAACCAACCGATACAAGCACGTCAACGATGGAAGA
AGATGACGAGCCGGGCGGCTCTTACGAGGACTGCGACTTTTCGTTTGCAG
GGGACGGAAAATGCCACGAAGATCTCAACACGGAGGTTTGCGGTGAGATG
TGGTCCCGTCGTACTTGGTTGTTTGTACCGCTTGTCCGATTGCAGCCGCT
CCTATGCAATATCCCGCTCAAACTCTTTCCATTGCCGTTGATGGCATTAT
TATGTTTTGTTTTTGATGGTTACACCACTATCGAGGATGGGCGAAGTTGA
AAGGATGCTCCCGTGGTTTTATGTTGCTTTTTTGATTCTTCACTATCCAA
GCGCGTTGTGGTTCCTCGGCGAAATTCTTCACACGATTCCAGTGTTCTGA
GCTGTGTACCTCCCCGTACTGGCTCTGTGAGCAAATTCACGGGTTTCCGA
AGGCATCAGCTAACCCAAACAACTGCAGTGTACACAGCGCAATATTTTCG
CTCAAGACGTGTGCCACCACTCGCGAATTACGAGGACAGCAAGTCTAGGG
AGACGACGTGTAGGGTACGGCCGGTAGAGCCTCAAGAAGAGGTATGTGAA
GAAAACTGCTCCGTTGGTAAGGAGCTGAATCACAAAGGACCCTGAGGAGA
ACCGTCCTTTGATAAGTAAACCTGGCAGAGCTATCGTTGTCACCGAATGT
AAGTGTAACGCGTCCGTTCCAATCAATCCAGCCCCCGGAGGCATCTCTGG
GTTGCAAGAAGCCAAATTGCGTGCTCTACCTCGACGGAACAGTGCTTCCT
TACCGTTGTTGTCATTTTTTCATGGTACGGCTAGCGTTGGTAGGTGCTAT
GATCTTCCTCGAATGGCTTCTTGGTCGTCCCAGCACATCGTTCTGTCTGT
TGGAGTGATCATTCTCGGTACTAAACAACGTTCAAGTGCGGCGTGTGTTG
CCACACGCCGCTGTACTTTTGACCACGCGACGTCTCCCTCTCTTTCTTGC
TACCCCGTCCACGTCACGCCTCCAGGCTACGACGGAGGCGATTGCTGTTC
CTGCACCTGCGAGGTAAAGCTCCCGCTTCTTAGTAGATCCTTCTGATGTT
GCCAACGCTGTTCTGGCCACGTCGTAAAACATAGGTCGCTCCTATCGCGT
ACCATGTCCTTGGTACTGAAGGCGTACGTCAGGTACTGGAATGTTCGCGG
GCATAGATCCTCATTGTGGGTGTGCCAGTCGTTCTTACCCCCACGCAATT
CGAACCCCGCAGATGCCTGTTTCGTTTCTGACAGAAATGGCTGTCTGTCG
CCTTGAACGCAGCCTGGTGACTTCAACTGCGGCGGGGAATACAACTGCAT
CGATCCCGAAGCCGTGTGCGTGGAAGACGACGATGGGGATGGCGGGGAAT
TGACGACCGCGGAGCTAGGTACACCTGACAATCAGACATCCGTTTGACGA
CGAGTGCAGTTGTCTTCTGAGCAAACCTCTCACGGTTGTAATCAAGCGAC
CCGAACCCCGGCGTGGGCAGTTTCGATGCCGGGAAGATATCCTCTGTGCT
ATCGTTATGGTGCCAGAAGCGCGTATGCAAGCAGCCAGCTGGAAACCCCG
ATGGGCGTCTTTCGCTGTGCAGACTGCATCCAATGACGAAAATCCCGTAT
TTTTCTCGCGTCGAGTCGGCCGTTGCCAAAGTCAACCGTCTCAAATATGC
GTCTACGAAAGGCTGGGGTACGATAAATCGTGTACTGTGGAGGTCCAAAC
CCTGTGCGATATTGATGCCCTTGACCGTCGCTGAAACTCGGCTTCGGTGC
TCCTCTCTTAAACCTCGTTTTCAAGCGTGACCAGCAACCGCTCGGCTCTG
TAAACCCAAGTGCACTATTTCGTTTTTTTCTACCCGCTTTAATGGAAACG
CCCTGGCCACCGTACTTCTTGCCGCTGTTACAGAGGACGACGGTATCACG
GACGAGATGGCCGACGATGCTCGCACGGCAGATGACGATACCTCTGCCGC
TGGAACCACCTCCCTCTCGTCCATGGTTATCGGGGTCGCCACCGCCGCCG
GTGCGGCTTCCGTGTTCGCAGCGCACACTGCTTTGTAACGCTGCTTTCGC
CCTCCCTCCTATGTAAATTGTGTGCGTGTTATTTTGTTTTGTTGAATCCC
TGACAAATCGTTTGACGTACCTTACTTGTCCAGAGAGGTGTGCCCGCTCA
TGACCTTTGTAACATCCTCGTTTTGTAGTTGTCTTGCTCCTCACAGTAAG
ACAGCGAGGTGGTTGTTCTTGAGTTTCCACCGCTGCTGTCTGTGCCTTCA
GTGTGCGTCTGAGTTGCGGTTCACCGTTTCCGGCTTGATTTGAGCTTTGA
CCAGTTGTGGAGACTGGGATCGTAGGCCTTGACGTACCAGGCATACGTAA
GGCTGGTATTTTTCCCGCTACTAGATTGTTCGAAACGCAGGGGTGTGCGT
GCGTTACAACTGTTTGCCGCAAAGAATCCAGCCGCAAAAAGGAGGAGTGT
CAGGTAGCAGCAGTGCTAGCTAGTAGTATGCGCAGCGAGAGGGCATCGGC
GGTTCGACAATCTACTGATTTGGGACGGAAAACATGGCCTTACGGTCGAA
CGCGTGTTGGCGTACAACCTCACCGCTGCATCCGACGTCTGGCGATTGGG
GGTTTGGGGGCACATGATGTGGTCCTTCGAGTGTGCGGTTGCCGGTGAAT
GTGCAGTAAGGGTGGGTCGATGCATGTGTGTACTTGCTTGGCATAGAGCT
TCAAACATTCAAACACATGGCAAAAAACTCTCTGTCTTCTTTGTACAGCT
GCCAACGAGAGATATATATGCAGGCAGATGGACGACATGCATGCATGCAA
AGGTTGTGCATCCTGCGCTGTTGGAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig873:2365..10090+

>mRNA_Ecto-sp13_S_contig873.20195.1 ID=mRNA_Ecto-sp13_S_contig873.20195.1|Name=mRNA_Ecto-sp13_S_contig873.20195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig873:2365..10090+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCTTCTCCAGACGAACAGCGCTTTCGGTCGTGGTGGCAGCAACCGC
GCTTCTCGTACCTGACCACGTTAGCTTAGCCGCCACGACAACCGACCAGG
ACACAACAGGAACGACAGTTACCGCCACATCAATGGAACCAACCGGCACC
ACGTCAACGGGGACAACTGATACCGCCACGTCAATGGAACCAACCGGCAC
CACGCCAACGGAAACAACTGATAGCACCACGTCCATGGAACCAACCGATA
CAAGCACGTCAACGATGGAAGAAGATGACGAGCCGGGCGGCTCTTACGAG
GACTGCGACTTTTCGTTTGCAGGGGACGGAAAATGCCACGAAGATCTCAA
CACGGAGGTTTGCGGCTACGACGGAGGCGATTGCTGTTCCTGCACCTGCG
AGCCTGGTGACTTCAACTGCGGCGGGGAATACAACTGCATCGATCCCGAA
GCCGTGTGCGTGGAAGACGACGATGGGGATGGCGGGGAATTGACGACCGC
GGAGCTAGAGGACGACGGTATCACGGACGAGATGGCCGACGATGCTCGCA
CGGCAGATGACGATACCTCTGCCGCTGGAACCACCTCCCTCTCGTCCATG
GTTATCGGGGTCGCCACCGCCGCCGGTGCGGCTTCCGTGTTCGCAGCGCA
CACTGCTTTGTAA
back to top