mRNA_Ecto-sp13_S_contig870.20164.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig870.20164.1
Unique NamemRNA_Ecto-sp13_S_contig870.20164.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig870.20164.1 vs. uniprot
Match: D7FKM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKM6_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 1.240e-70
Identity = 119/131 (90.84%), Postives = 123/131 (93.89%), Query Frame = 1 
Query:    1 MKLLCAALWTSVVAGVPHFASCFVAGPRLAPRLSVAVNAFLKYRAESSAFSTTS-RRMRRPRVLTATAQGPGMDIDAEGFGKEIRVDIKGGIQGIPKESWDGLLRPDDSPFLEHDWLYAMEKSKCATVDTG 390
            MKLLCA LWT+VVAG P FASCFVAGPRLAPR+SVAVNA LK RAE+SAFSTTS RRMRR RVLTATAQGPGMDIDAEG GKEIRVDIKGGIQGIPKESWDGLLRPD+SPFLEHDWLYAMEKSKCATVDTG
Sbjct:    1 MKLLCAVLWTAVVAGTPDFASCFVAGPRLAPRVSVAVNALLKCRAENSAFSTTSSRRMRRRRVLTATAQGPGMDIDAEGSGKEIRVDIKGGIQGIPKESWDGLLRPDESPFLEHDWLYAMEKSKCATVDTG 131
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BLAST of mRNA_Ecto-sp13_S_contig870.20164.1 vs. uniprot
Match: A0A7C3RRD0_9BACT (GNAT family N-acetyltransferase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C3RRD0_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 2.050e-5
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:  229 EGFGKEIRVDIKGGIQGIPKESWDGLLRPDDSPFLEHDWLYAMEKSKCATVDTG 390
            +G    + + +  GI  I +E W+ L+  DDSPF+E DWL+AME+S  AT  TG
Sbjct:   35 DGSAHAVELAVVEGISKIGREEWNSLVTDDDSPFIEWDWLFAMEESASATRKTG 88
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BLAST of mRNA_Ecto-sp13_S_contig870.20164.1 vs. uniprot
Match: A0A6L7SUE0_9GAMM (N-acetyltransferase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7SUE0_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 8.370e-5
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:  208 PGMDID-AEGFGKEIRVDIKGGIQGIPKESWDGLLRPDDSPFLEHDWLYAMEKSKCATVDTG 390
            PGM    AE   +++ V I  GI  IP E+WDG+LR +D PFL+H +L AME+  C   + G
Sbjct:   10 PGMSKQTAEHEAQKLTVQIHHGIDEIPSEAWDGMLR-NDYPFLKHRYLVAMERHHCVGKEVG 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig870.20164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKM6_ECTSI1.240e-7090.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7C3RRD0_9BACT2.050e-544.44GNAT family N-acetyltransferase n=1 Tax=bacterium ... [more]
A0A6L7SUE0_9GAMM8.370e-545.16N-acetyltransferase n=1 Tax=Gammaproteobacteria ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig870contigEcto-sp13_S_contig870:7794..9857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score236.1
Seed ortholog evalue1.1e-59
Seed eggNOG ortholog2880.D7FKM6
Model size896
KEGG koko:K09919
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.Peptidogalycan biosysnthesis/recognition
EggNOG OGs2QRI5@2759,COG3146@1
Cds size465
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.180683-CDS-Ecto-sp13_S_contig870:7793..80691681464143.180683-CDS-Ecto-sp13_S_contig870:7793..8069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig870 7794..8069 +
1681464143.1919687-CDS-Ecto-sp13_S_contig870:9237..94261681464143.1919687-CDS-Ecto-sp13_S_contig870:9237..9426Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig870 9238..9426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.2015512-UTR-Ecto-sp13_S_contig870:9426..98571681464143.2015512-UTR-Ecto-sp13_S_contig870:9426..9857Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig870 9427..9857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig870.20164.1prot_Ecto-sp13_S_contig870.20164.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig870 7794..9426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig870.20164.1

>prot_Ecto-sp13_S_contig870.20164.1 ID=prot_Ecto-sp13_S_contig870.20164.1|Name=mRNA_Ecto-sp13_S_contig870.20164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
MKLLCAALWTSVVAGVPHFASCFVAGPRLAPRLSVAVNAFLKYRAESSAF
STTSRRMRRPRVLTATAQGPGMDIDAEGFGKEIRVDIKGGIQGIPKESWD
GLLRPDDSPFLEHDWLYAMEKSKCATVDTGAWGCLGWGNILPLAEFLRWS
SSLF*
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mRNA from alignment at Ecto-sp13_S_contig870:7794..9857+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig870.20164.1 ID=mRNA_Ecto-sp13_S_contig870.20164.1|Name=mRNA_Ecto-sp13_S_contig870.20164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2064bp|location=Sequence derived from alignment at Ecto-sp13_S_contig870:7794..9857+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCTCCTGTGTGCTGCCTTGTGGACCTCAGTCGTCGCAGGAGTCCC
ACACTTTGCTTCATGCTTTGTGGCCGGGCCACGCCTCGCACCGCGACTAT
CGGTCGCAGTCAATGCCTTCCTCAAGTACAGAGCAGAGAGCTCCGCTTTC
AGTACCACCTCTAGGAGGATGCGGCGGCCAAGAGTGCTGACAGCCACAGC
ACAAGGGCCAGGCATGGATATCGACGCGGAAGGGTTCGGAAAGGAGATTC
GAGTGGACATCAAGGGGGGAATCCAGGTGAGGTTCCTGTTCAGTGAAAAT
TTGAACAAGAACAGAAGTGCTCATGATCCACTGCCGTTGTACACATTTTC
GGTGTCCTGCTGGCAACTGCTGGCTGCACATTGTGTGCTTGGCGTGTCAT
GATTTAACCCTTGCGTTACTGGGTTGATTTGACTTGGCTTTTTTCGGCTC
ATTCAGCAAATCGCCCCCACGTTTTTACTACCGCAAAACATGGATCAAAA
TCGCGATAATTTACGTATACACATCCCCGACTTTATGTACAGCAGTGCAG
TCTCGAACCCTGTCCGTCGCGCGAAAGTGCACAGAGCAAGCGCTCCTCCT
TTCACCCCCAATAGTCTGGACCACACACAGCGCAGTCAAAACAACATCAG
GCACCGAGGCAGGACACTAGCGCTGGCTCCGGTGTGGGTTGTCTCTGCTC
TCCCTCGCGGACCCGAGACCGGGTTGATAACAAGTTGAGGGTCCTGTATG
TACCCTCCCGTGTTGTTTTCCGGTTGGATGTTACAGGAGTAGGGAGGACT
AGATTGGATCTGGACACAAAGAACATAATCTGCCCCACATCAGAGACGTT
ACTGCTGTGCAAAGGGTACAGCAGTAGTATTGCATGTATTCCTGTGCACA
TTGCTAGTATTCGCGCTTTAGTGGTGGGCTCTTGGTCTCTCTGCTGGTCT
ATTTGGAATATGTTTTTTTTCCTCATGTATAGGCGAGGAACGCCGGCGAT
CTTTAGGCACGCAAAGCTATCATGTGCTGTCGTCCCTGTAGTCACATACC
AAGGGTTAACAGACTACGTCGAAGTGCTATTTACAGCTCATGATCGACAA
ATGTTCTCTGCTGTCGTGACCTCCAGTATCCTCGGCCGCAACACCGCTGC
CGGAGGAAGAAGACGTAGGCGTGGTTCCGGTGGCATACACAGCAGTATCG
ACGATTTTTTCGTTTGTGCAACATGATCGCACCCTATGTAGTGGCCTGTT
GTAGGGCCACGAACATGCTGCGTTACACCCGCCTGCTGCTGCGGAAACCT
CGTATCTATTTTAATCGCAAGGCAACGTCATCGACTTACTACCGCCTTTC
AGCAATCTAACAAAATAAAAGATTTTTTTCCGCGTACCACACCGTTCTAC
AACCAAAGCCCAAACCCAATTTTATGTCTGCTATGGTTGTACAGGGTATC
CCGAAGGAATCATGGGACGGGCTTTTGCGACCAGACGATTCACCGTTCTT
GGAGCACGATTGGCTCTACGCGATGGAGAAGAGCAAGTGTGCCACCGTAG
ACACAGGTGCGTGGGGATGCCTTGGCTGGGGAAATATTCTTCCGCTTGCG
GAGTTTTTGCGGTGGAGCAGCAGTCTTTTTTAGTTTCGCGTGACTTCGTG
TCGCGGACCATCAAGCACTTTGTGCTCGTGCTGTCGTGCATACGACTTGG
TCTGATTGAGAGAGGAGCGACGCCCCAAAAATGATGCCTTTGGTTTGGTG
GGACGCAGTTCATGACGGATGCTGTCTTTTGTTCGTGGTATTAGCAGCCC
TCTTACACCCGAGGTAAGATTTTATCCCGGACGTGTACTATCGTTCAGCC
TAAACTTGTGCAGGATCCGCTTTGGCCACTCCCAAACGAAGCGGGTCTAT
ACCAGCTTTTTCCAGCCGGGGTGGAATCTAAACTTCCGCCTGAGATTGCT
GTCTTGCCATTTCCAGACAGAAGGCACGTCATGCTTGAGACAAGCGGTGT
AAACTGCAACGTAGACTTTCCTGTTTCAAGCTATCGCATGCAACAATCCT
CATTCAAGCACACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig870:7794..9857+

>mRNA_Ecto-sp13_S_contig870.20164.1 ID=mRNA_Ecto-sp13_S_contig870.20164.1|Name=mRNA_Ecto-sp13_S_contig870.20164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig870:7794..9857+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCTCCTGTGTGCTGCCTTGTGGACCTCAGTCGTCGCAGGAGTCCC
ACACTTTGCTTCATGCTTTGTGGCCGGGCCACGCCTCGCACCGCGACTAT
CGGTCGCAGTCAATGCCTTCCTCAAGTACAGAGCAGAGAGCTCCGCTTTC
AGTACCACCTCTAGGAGGATGCGGCGGCCAAGAGTGCTGACAGCCACAGC
ACAAGGGCCAGGCATGGATATCGACGCGGAAGGGTTCGGAAAGGAGATTC
GAGTGGACATCAAGGGGGGAATCCAGGGTATCCCGAAGGAATCATGGGAC
GGGCTTTTGCGACCAGACGATTCACCGTTCTTGGAGCACGATTGGCTCTA
CGCGATGGAGAAGAGCAAGTGTGCCACCGTAGACACAGGTGCGTGGGGAT
GCCTTGGCTGGGGAAATATTCTTCCGCTTGCGGAGTTTTTGCGGTGGAGC
AGCAGTCTTTTTTAG
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