mRNA_Ecto-sp13_S_contig87.20162.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig87.20162.1
Unique NamemRNA_Ecto-sp13_S_contig87.20162.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig87.20162.1 vs. uniprot
Match: D7FVE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE9_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.590e-15
Identity = 49/123 (39.84%), Postives = 65/123 (52.85%), Query Frame = 2 
Query:    5 MASKSVERDRTAIGVKVKYLIFDWTKACEAKRGKATRVSAKNMKEATRLQCDRWIAQGALEDTLDEGPPR------THEKPGNNGGSHVQPTQKL-------------------CTWEQELRP 298
            MA+K V+RD TA G  V Y I DW K  E KR K  +V+AKN++EATRLQ +RWI QGAL     +  PR      + E    N G+ V+PT+                     C+W+++LRP
Sbjct:    1 MAAKQVKRDFTADGPSV-YFISDWKKDSEPKRSKRKKVAAKNLQEATRLQVERWIDQGALRQNFAKESPRPVGVGKSRETTSANMGTQVEPTELQRSSEEEASTPTTVEEPDLQCSWDRDLRP 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig87.20162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVE9_ECTSI3.590e-1539.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig87contigEcto-sp13_S_contig87:34434..35823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size301
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464142.931043-UTR-Ecto-sp13_S_contig87:34433..344371681464142.931043-UTR-Ecto-sp13_S_contig87:34433..34437Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig87 34434..34437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464142.9407566-CDS-Ecto-sp13_S_contig87:34437..345621681464142.9407566-CDS-Ecto-sp13_S_contig87:34437..34562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig87 34438..34562 +
1681464142.9501357-CDS-Ecto-sp13_S_contig87:35008..351261681464142.9501357-CDS-Ecto-sp13_S_contig87:35008..35126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig87 35009..35126 +
1681464142.959444-CDS-Ecto-sp13_S_contig87:35769..358231681464142.959444-CDS-Ecto-sp13_S_contig87:35769..35823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig87 35770..35823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig87.20162.1prot_Ecto-sp13_S_contig87.20162.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig87 34438..35823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig87.20162.1

>prot_Ecto-sp13_S_contig87.20162.1 ID=prot_Ecto-sp13_S_contig87.20162.1|Name=mRNA_Ecto-sp13_S_contig87.20162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
MASKSVERDRTAIGVKVKYLIFDWTKACEAKRGKATRVSAKNMKEATRLQ
CDRWIAQGALEDTLDEGPPRTHEKPGNNGGSHVQPTQKLCTWEQELRPR
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mRNA from alignment at Ecto-sp13_S_contig87:34434..35823+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig87.20162.1 ID=mRNA_Ecto-sp13_S_contig87.20162.1|Name=mRNA_Ecto-sp13_S_contig87.20162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87:34434..35823+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAATGGCGTCGAAATCTGTCGAGCGCGATCGGACGGCCATTGGGGTTA
AAGTCAAATATTTAATCTTCGACTGGACCAAGGCATGCGAGGCCAAGAGG
GGCAAGGCTACGAGGGTCTCGGCGAAAAAGTGAGTCGACTGTTTTGGGTC
CCCTCGGACGTCCACACTCATACCTGAATCCTGACTGTGAGCTCCCCTGC
CCTTGTTGAAATCTTCACCAAGTGAAAACTCCAACATGGTCCGTTGAACG
TCTTGACATGTCATCACTACCAACTCATTTTAGTTTCCCGCACGGCGCTT
GATTGGCAGAAATGCTGTGAGCGCTGATTTAAATAACTAATTAAGTAACC
ATCTTCTGCCAGAAGCCATGAAGTAATTCTGTCCGTCATCATCCACATAT
CAGGTCCCCAGCTAGACGTAGTTACCGTGAGAGTTGCATAAAACATCGGT
CGGAACACGTAGTATAGGTTGTGCCCGACACACACTGCTGCACCAGCATA
TCACAGCAGTTGTTTGCCCATGACAACATGCACCTTCTTCGTCCATGTGT
TGCTGTTTTCCCACGACATTTGCAGTATGAAAGAGGCAACACGTCTCCAA
TGTGATCGATGGATAGCGCAGGGTGCACTTGAGGACACGTTGGACGAAGG
TCCTCCTCGCACGCACGAAAAACCCGGAAACAACGGGGGATCGGTAAGAG
AGCCTACCTGCTTGCTCAACTCTCGAATGCCACCTAGTGTTGTGGAGTGT
ACGCGTGCCCACACGTAGGTAGAGTTACACAGAACATTATTAGTTGGTTC
AAGAACCACTTGTTTACTGGCGCAGAAGACAAATCTAATAGGCTGTGGTC
GTCGCAGCATGTCCCTGCTGCTTTATTCTGAATGTTGTACCAAGATCTCC
CGCGACCTCCCACCGCAACATCAACTGGGACGTTTTCTGTACTTTCATCG
CTCACTCTGCGTTGCAACCCCCCTCTGCAATTCATAGATGCTGATTCGTA
ACGCCTCATTTTGTTTCGCTTCTTGTCGTTGCCGCCCCCTCCCCTTGCCC
TTAGTCCTCGCGATAAGTCTTTGCCCACCGCCAAGCGACGTCCCATTTGT
GTTTTAGCCTTTACGTCGTAAACAAAAGAATGAGTTCTGACTCAACAGCG
CGCGCGGTACTCACAAAGCTCCCGATCGCTGACGGACAAATAAATACGCA
AATATCCTCTTCCCCAGGCATCACCAACATGAATGTCTTGAACGGAGGCG
ATGACTCGTCTCCTCTCGTTTTTGCTCTGATGGCATGATGAACGTTGTCG
ACGTTCTGCTTCTTCTCATCCCCGACCCATGTACAGCATGTACAGCCAAC
ACAGAAGCTATGTACCTGGGAACAGGAGCTCAGACCGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig87:34434..35823+

>mRNA_Ecto-sp13_S_contig87.20162.1 ID=mRNA_Ecto-sp13_S_contig87.20162.1|Name=mRNA_Ecto-sp13_S_contig87.20162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87:34434..35823+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCGAAATCTGTCGAGCGCGATCGGACGGCCATTGGGGTTAAAGT
CAAATATTTAATCTTCGACTGGACCAAGGCATGCGAGGCCAAGAGGGGCA
AGGCTACGAGGGTCTCGGCGAAAAATATGAAAGAGGCAACACGTCTCCAA
TGTGATCGATGGATAGCGCAGGGTGCACTTGAGGACACGTTGGACGAAGG
TCCTCCTCGCACGCACGAAAAACCCGGAAACAACGGGGGATCGCATGTAC
AGCCAACACAGAAGCTATGTACCTGGGAACAGGAGCTCAGACCGCGG
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