mRNA_Ecto-sp13_S_contig8697.20158.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8697.20158.1 vs. uniprot
Match: D8LF39_ECTSI (Putative Translation Initiation Inhibitor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF39_ECTSI) HSP 1 Score: 247 bits (630), Expect = 3.050e-74 Identity = 127/135 (94.07%), Postives = 130/135 (96.30%), Query Frame = 1
Query: 454 APAGNYVLHRRSGDTLYMSGHLPKAPDGTLTTGKVGSDLEVEQGAEAARLVAINLITTMKAAAGDLDKIRLVKITGFVRSADGFAGQSAVLNGASDLFMEVFGREKGAHARSAVGVNALPLGVCVEIEAIVEMVS 858
A GNYVLHRRSGDTLYMSGHLPKAPDGTLTTGKVGSDLE+EQGAEAARLVAINLITTMKAAAGDLDKIRLVKITGFVRSADGF GQSAVLNGASDL +EVFGREKGAHARSAVGVNALPLGVCVEIEAI E+VS
Sbjct: 66 AARGNYVLHRRSGDTLYMSGHLPKAPDGTLTTGKVGSDLEIEQGAEAARLVAINLITTMKAAAGDLDKIRLVKITGFVRSADGFTGQSAVLNGASDLLLEVFGREKGAHARSAVGVNALPLGVCVEIEAIAEVVS 200
BLAST of mRNA_Ecto-sp13_S_contig8697.20158.1 vs. uniprot
Match: A0A4D9CNR0_9STRA (YjgF_endoribonc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNR0_9STRA) HSP 1 Score: 166 bits (419), Expect = 2.090e-44 Identity = 87/150 (58.00%), Postives = 114/150 (76.00%), Query Frame = 1
Query: 409 VEERLKQLDITLPEV-APAGNYVLHRRSGDTLYMSGHLPKAPDGTLTTGKVGSDLEVEQGAEAARLVAINLITTMKAAAGDLDKI-RLVKITGFVRSADGFAGQSAVLNGASDLFMEVFGREKGAHARSAVGVNALPLGVCVEIEAIVEM 852
+E RL QL I LP+V AP GNY L R+G+ L+++GH+P G L TGKVG+D +E+G EAA+++AINL+ T+K+ GDLDK+ R+VK+ GFV DGF+ Q V+NGASD F++VFG +KG HARSAVG NALPL + VEIEAIVE+
Sbjct: 4 IEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKSGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFG-DKGVHARSAVGTNALPLNIPVEIEAIVEV 152
BLAST of mRNA_Ecto-sp13_S_contig8697.20158.1 vs. uniprot
Match: A0A3R7HFK6_9STRA (YjgF_endoribonc domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HFK6_9STRA) HSP 1 Score: 163 bits (412), Expect = 3.550e-43 Identity = 88/150 (58.67%), Postives = 110/150 (73.33%), Query Frame = 1
Query: 409 VEERLKQLDITLPEVA-PAGNYVLHRRSGDTLYMSGHLPKAPDGTLTTGKVGSDLEVEQGAEAARLVAINLITTMKAAAGDLDKI-RLVKITGFVRSADGFAGQSAVLNGASDLFMEVFGREKGAHARSAVGVNALPLGVCVEIEAIVEM 852
+E +L++L LPEVA P GNY RSG+T+YM+GHLP+ G L TGKVG DL E+ +AA V+++++ T+K GDLDKI R+VK+ GFV DGFAGQ AV+NGASD F +VFG KG HARSAVG NALPL V VEIEA+VE+
Sbjct: 22 IERKLEELGYVLPEVASPKGNYRTSVRSGNTIYMAGHLPQPAGGELITGKVGKDLTPEEAYDAAHYVSLSIMATLKQEVGDLDKIKRVVKLVGFVNCVDGFAGQPAVINGASDTFGKVFGN-KGVHARSAVGTNALPLNVAVEIEAVVEI 170
BLAST of mRNA_Ecto-sp13_S_contig8697.20158.1 vs. uniprot
Match: A0A7S3M7I1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7I1_9STRA) HSP 1 Score: 163 bits (412), Expect = 5.640e-43 Identity = 84/151 (55.63%), Postives = 111/151 (73.51%), Query Frame = 1
Query: 409 VEERLKQLDITLPEVAPA--GNYVLHRRSGDTLYMSGHLPKAPDGTLTTGKVGSDLEVEQGAEAARLVAINLITTMKAAAGDLDKIR-LVKITGFVRSADGFAGQSAVLNGASDLFMEVFGREKGAHARSAVGVNALPLGVCVEIEAIVEM 852
+E R+ L LP PA GNY+ + + G+T+Y +GHLP+ DGTL G++G ++ VEQG +AAR+ A+N++ T+K+A GDLDK++ +VKITGFV SA F Q AVLNG SDL E+FG E G HARSA+GVN LPLGV VEIEAI+E+
Sbjct: 35 IEARIASLGYKLPNEPPAPKGNYMGYTKRGNTIYTAGHLPQKHDGTLVLGRLGENVTVEQGQDAARVAALNILATVKSAVGDLDKVKKIVKITGFVNSASDFTNQPAVLNGCSDLLGEIFGVEIGRHARSALGVNVLPLGVAVEIEAIIEV 185
BLAST of mRNA_Ecto-sp13_S_contig8697.20158.1 vs. uniprot
Match: A0A6H5KXY4_9PHAE (YjgF_endoribonc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXY4_9PHAE) HSP 1 Score: 160 bits (404), Expect = 7.250e-42 Identity = 89/148 (60.14%), Postives = 109/148 (73.65%), Query Frame = 1
Query: 412 EERLKQLDITLPEV-APAGNYVLHRRSGDTLYMSGHLPKAPDGTLTTGKVGSDLEVEQGAEAARLVAINLITTMKAAAGDLDKI-RLVKITGFVRSADGFAGQSAVLNGASDLFMEVFGREKGAHARSAVGVNALPLGVCVEIEAIVE 849
E +LK+L I LP AP GN+V+ R+G+ LY SGHLP + +G TTGKVG +L E+ EAAR VAI LI ++K GDLD++ R+VK+ GFV DGFAGQ V+NGASDLF EVFG E+G H+RSAVG NALP+ V VEIEAIVE
Sbjct: 22 EAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQELNEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFG-ERGVHSRSAVGTNALPMNVPVEIEAIVE 168
BLAST of mRNA_Ecto-sp13_S_contig8697.20158.1 vs. uniprot
Match: A0A835Z1E3_9STRA (Putative translation initiation inhibitor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E3_9STRA) HSP 1 Score: 159 bits (401), Expect = 1.360e-41 Identity = 85/149 (57.05%), Postives = 107/149 (71.81%), Query Frame = 1
Query: 409 VEERLKQLDITLPE-VAPAGNYVLHRRSGDTLYMSGHLPKAPDGTLTTGKVGSDLEVEQGAEAARLVAINLITTMKAAAGDLDKI-RLVKITGFVRSADGFAGQSAVLNGASDLFMEVFGREKGAHARSAVGVNALPLGVCVEIEAIVE 849
+E RL Q I L + V P GNYV RSG+TL+++GH+P PD L GKVG D+ EQ AR VAIN+++T+K GDLD++ R+VK+ GFV D F GQ V+NGASDLF+EVFG+ KG HARSAVG NALPLG+ VEIEA++E
Sbjct: 23 IEARLAQRGIQLSDPVPPKGNYVPAVRSGNTLFLAGHIPLMPDNNLAKGKVGKDVTPEQANAIARQVAINILSTLKVELGDLDRVTRIVKLVGFVNCTDDFTGQPGVINGASDLFVEVFGK-KGVHARSAVGTNALPLGIPVEIEAVIE 170
BLAST of mRNA_Ecto-sp13_S_contig8697.20158.1 vs. uniprot
Match: A0A6A3U578_9STRA (YjgF_endoribonc domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U578_9STRA) HSP 1 Score: 158 bits (400), Expect = 1.560e-41 Identity = 87/150 (58.00%), Postives = 108/150 (72.00%), Query Frame = 1
Query: 409 VEERLKQLDITLPEVA-PAGNYVLHRRSGDTLYMSGHLPKAPDGTLTTGKVGSDLEVEQGAEAARLVAINLITTMKAAAGDLDKI-RLVKITGFVRSADGFAGQSAVLNGASDLFMEVFGREKGAHARSAVGVNALPLGVCVEIEAIVEM 852
+E +L+QL TLP VA P GNY RSG+T+Y++GHLP+ G L GK+G DL EQG +AA VA++L+ T+K GDLDKI R+VK+ GFV DGF Q AV+NGASD +VFG +KG HARSAVG NALPL V VEIEA+VE+
Sbjct: 19 IERKLEQLGYTLPAVADPKGNYRTSVRSGNTIYLAGHLPQPAGGELILGKIGQDLTPEQGYDAAHYVALSLMATLKHEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFG-DKGIHARSAVGTNALPLNVAVEIEAVVEI 167
BLAST of mRNA_Ecto-sp13_S_contig8697.20158.1 vs. uniprot
Match: H3HDE8_PHYRM (YjgF_endoribonc domain-containing protein n=9 Tax=Peronosporaceae TaxID=4777 RepID=H3HDE8_PHYRM) HSP 1 Score: 158 bits (400), Expect = 1.660e-41 Identity = 88/150 (58.67%), Postives = 108/150 (72.00%), Query Frame = 1
Query: 409 VEERLKQLDITLPEVA-PAGNYVLHRRSGDTLYMSGHLPKAPDGTLTTGKVGSDLEVEQGAEAARLVAINLITTMKAAAGDLDKI-RLVKITGFVRSADGFAGQSAVLNGASDLFMEVFGREKGAHARSAVGVNALPLGVCVEIEAIVEM 852
+E +L++L TLP VA P GNY RSG+TLY++GHLP+ G L GKVG DL EQG +AA VA++L+ T+K GDLDKI R+VK+ GFV DGF Q AV+NGASD +VFG +KG HARSAVG NALPL V VEIEA+VE+
Sbjct: 21 IERKLEELGYTLPAVADPKGNYRTSVRSGNTLYLAGHLPQPAGGDLILGKVGKDLTPEQGYDAAHYVALSLMATLKHEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFG-DKGLHARSAVGTNALPLNVAVEIEAVVEI 169
BLAST of mRNA_Ecto-sp13_S_contig8697.20158.1 vs. uniprot
Match: M4BMK3_HYAAE (YjgF_endoribonc domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BMK3_HYAAE) HSP 1 Score: 160 bits (404), Expect = 1.680e-41 Identity = 87/150 (58.00%), Postives = 110/150 (73.33%), Query Frame = 1
Query: 409 VEERLKQLDITLPEVA-PAGNYVLHRRSGDTLYMSGHLPKAPDGTLTTGKVGSDLEVEQGAEAARLVAINLITTMKAAAGDLDKI-RLVKITGFVRSADGFAGQSAVLNGASDLFMEVFGREKGAHARSAVGVNALPLGVCVEIEAIVEM 852
VE +L++L TLP VA P GNY RSG+T+Y++GHLP+ G L GK+G DL +EQG +AA VA++L+ T+K GDLDKI R+VK+ GFV DGF+ Q AV+NGASD +VFG +KG HARSAVG NALPL V VEIEA+VE+
Sbjct: 22 VERKLEELGYTLPAVAEPKGNYRTSVRSGNTIYLAGHLPQPAGGDLIVGKIGKDLTLEQGYDAAHYVALSLMATLKNEVGDLDKIKRIVKLVGFVNCVDGFSQQPAVINGASDTIGKVFG-DKGIHARSAVGTNALPLNVAVEIEAVVEV 170
BLAST of mRNA_Ecto-sp13_S_contig8697.20158.1 vs. uniprot
Match: A0A662WS90_9STRA (YjgF_endoribonc domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WS90_9STRA) HSP 1 Score: 159 bits (402), Expect = 2.450e-41 Identity = 87/150 (58.00%), Postives = 109/150 (72.67%), Query Frame = 1
Query: 409 VEERLKQLDITLPEVA-PAGNYVLHRRSGDTLYMSGHLPKAPDGTLTTGKVGSDLEVEQGAEAARLVAINLITTMKAAAGDLDKI-RLVKITGFVRSADGFAGQSAVLNGASDLFMEVFGREKGAHARSAVGVNALPLGVCVEIEAIVEM 852
+E +L++L TLP VA P GNY RSG+T+Y++GHLP+ G + TGKVG DL E+G +AA VA++L+ T+K GDLDKI R+VK+ GFV DGF Q AV+NGASD +VFG +KG HARSAVG NALPL V VEIEAIVE+
Sbjct: 55 IERKLEELGYTLPAVATPKGNYRTAVRSGNTIYLAGHLPQPAGGDIITGKVGKDLTQEEGYDAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTAQPAVINGASDTIGKVFG-DKGIHARSAVGTNALPLNVAVEIEAIVEV 203 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8697.20158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8697.20158.1 >prot_Ecto-sp13_S_contig8697.20158.1 ID=prot_Ecto-sp13_S_contig8697.20158.1|Name=mRNA_Ecto-sp13_S_contig8697.20158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp MRTIPSALSFFLLPSSDNVSPASPRLSPSCASSPTGRPASSRTTMATGAVback to top mRNA from alignment at Ecto-sp13_S_contig8697:48..4136+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8697.20158.1 ID=mRNA_Ecto-sp13_S_contig8697.20158.1|Name=mRNA_Ecto-sp13_S_contig8697.20158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4089bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8697:48..4136+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8697:48..4136+ >mRNA_Ecto-sp13_S_contig8697.20158.1 ID=mRNA_Ecto-sp13_S_contig8697.20158.1|Name=mRNA_Ecto-sp13_S_contig8697.20158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8697:48..4136+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |