mRNA_Ecto-sp13_S_contig863.20070.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig863.20070.1
Unique NamemRNA_Ecto-sp13_S_contig863.20070.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig863.20070.1 vs. uniprot
Match: D7FLW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW9_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 6.420e-12
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    4 MSSSRFQVEHCDVNVAMKAGESEISEDTEEHNTSPTVETTPEVGTTRQEVDSSGSVGG 177
            MSSS  QVEH DVNVA+KA ESE+SED EEH+TSPTV+ TPEVGTT Q+  S  + GG
Sbjct:    1 MSSSGSQVEHYDVNVAIKADESELSEDEEEHSTSPTVKATPEVGTTHQQRRSEHTHGG 58
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BLAST of mRNA_Ecto-sp13_S_contig863.20070.1 vs. uniprot
Match: D7FLW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW7_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.390e-10
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 AMSSSRFQVEHCDVNVAMKAGESEISEDTEEHNTSPTVETTPEVGTTRQE 150
            AMSSS  QVE C+VNVA+KAGESE SED EEHNTSP +E T E G T QE
Sbjct:   14 AMSSSGSQVEQCEVNVAIKAGESESSEDEEEHNTSPVMEPTQEAGNTHQE 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig863.20070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLW9_ECTSI6.420e-1268.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLW7_ECTSI2.390e-1072.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig863contigEcto-sp13_S_contig863:13903..20867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size561
Hectar predicted targeting categoryother localisation
Exons6
Cds size558
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig863.20070.1prot_Ecto-sp13_S_contig863.20070.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig863 13903..20864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.7096405-CDS-Ecto-sp13_S_contig863:13902..140021681464135.7096405-CDS-Ecto-sp13_S_contig863:13902..14002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig863 13903..14002 -
1681464135.719376-CDS-Ecto-sp13_S_contig863:18934..190321681464135.719376-CDS-Ecto-sp13_S_contig863:18934..19032Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig863 18935..19032 -
1681464135.7286263-CDS-Ecto-sp13_S_contig863:19875..200161681464135.7286263-CDS-Ecto-sp13_S_contig863:19875..20016Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig863 19876..20016 -
1681464135.7393737-CDS-Ecto-sp13_S_contig863:20418..204741681464135.7393737-CDS-Ecto-sp13_S_contig863:20418..20474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig863 20419..20474 -
1681464135.750277-CDS-Ecto-sp13_S_contig863:20512..206211681464135.750277-CDS-Ecto-sp13_S_contig863:20512..20621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig863 20513..20621 -
1681464135.7600424-CDS-Ecto-sp13_S_contig863:20810..208641681464135.7600424-CDS-Ecto-sp13_S_contig863:20810..20864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig863 20811..20864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.7702603-UTR-Ecto-sp13_S_contig863:20864..208671681464135.7702603-UTR-Ecto-sp13_S_contig863:20864..20867Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig863 20865..20867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig863.20070.1

>prot_Ecto-sp13_S_contig863.20070.1 ID=prot_Ecto-sp13_S_contig863.20070.1|Name=mRNA_Ecto-sp13_S_contig863.20070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=186bp
MSSSRFQVEHCDVNVAMKAGESEISEDTEEHNTSPTVETTPEVGTTRQEV
DSSGSVGGCLDQPGARPKSRRHHDTTGKDPGEREHEEEEEEEEEEEEEEE
EEKEGEEGEEGEEEEELEDKAYRGKRKLGGGGRAPRWQSVRTAGRAQPNY
AESPTREPSKRQRKASESGTGERGGGGAAVQYRRR*
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mRNA from alignment at Ecto-sp13_S_contig863:13903..20867-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig863.20070.1 ID=mRNA_Ecto-sp13_S_contig863.20070.1|Name=mRNA_Ecto-sp13_S_contig863.20070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6965bp|location=Sequence derived from alignment at Ecto-sp13_S_contig863:13903..20867- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGATGTCATCTTCTCGTTTTCAAGTCGAGCATTGCGATGTTAATGTGGC
GATGAAGGTGAGCTATGTTAGACATAGATCGAGGTGCGCGAGTCGGCCGC
ATGAAGCGCCGAGAACATGGTGCTGTACCCCTCCCGGCACCCGTACTGAT
CTGACGGAATCAGGACAATCAGCATGAAAATTCCACCGGTCTTCTACAGT
TATTGTGCGCCTGCCCGTTGACGACCGCCGTGCCTCCGCATCGCAGGCCG
GCGAGTCAGAAATTTCTGAAGATACAGAGGAACACAACACATCACCCACC
GTGGAAACGACTCCAGAGGTTGGAACCACCCGTCAAGAGGTAGATTCATC
TGGGTGTTCAGACTCTGTTGGTGCGTTGTTTTTGTGCTTGCAGCAGTGGG
AGGGTGTCTCGACCAACCGGGTGCTCGGCCGAAGTCGCGACGACATCACG
TGGTCCAATTTGGTGCCGGATCAGGCTATGATCGAAAAACCCATGGGCCC
CTTGATGACCGCTCAATGATCGAGGTGCTGCCTTCCTCCAGTTTGTGGCC
GTTTTTACGGCAACGTTGTGCTGGGCATAGGTGGTGGAGCGTCTCTTTCA
CTCTCCCGCCTACCATTGCGTGGCTGCAGAGAAGTATCATCGCGACCGCA
GATTCGGACCTGGCAGGACCGGGTTTCACCTGCCCCAAGGAACCGGAAGC
CATGTTTCATTCCTTCCTTATTTTTGTTCGATTATTTCGCTCTGCCATGG
ACTGGAACCGGTTCTAGGTCTCGCTGCCGGCGAAAAATATTTTCTCCCCT
GTTTGGTACAGCGTGGTGCTGTGCCCGTTTCCTGTTGAATGTCATCGACA
GGACACCACCGGAAAAGATCCAGGAGAGCGGGAGCACGAGGAGGAGGAAG
AGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAAGAGAAGGAGGGGGAG
GAGGGGGAGGAGGGGGAGGAAGAAGAGGAGCTGGAGGATAAGGTGTGCCA
ACGCTGTTCACCGTATGTCCTCACGAATCGAGCTCCTCTCGGTGTCAATC
GTGGGCATTCCGTTCAGCAGGCGATATTTAACAAGACCGGTCGCCCCGGT
GGTCTAGCGGTAATCTCGACTCCGCTAGTCGCAGAGGTCGTGAGTGCGAA
TCCCCATGGTGAGATTTTTGGTCAAACTTGCGAGTGAAAGCAAAAAATAT
AAAGTATGCTGAAAAGCTCTCGTGAGTACGAAGCTTCGGCGTTAGCACCG
TCGACGAGGGAAAGGGACGGCTGGACCCTTCTCGCGATAAAAATAAACTT
CAGCACGCAACGCAGGAGGAAGGTGGGGCACAAAAATATAGTAAAAAGAA
AAGAGCCGGTGTTGACCGCCTCCTGTGTGACCCTGGATGGTCGCAGTTGT
ACGAAAAAAGTACACGTCTCACCACAAAAAATGGGTGTACTGTTGCCATT
GTAAGTATGACGAAAAACACACACAGGCACATCCCGGCAGCATCGCCAGT
GCGGCCTGGGCGAAGGTAGCGACTTTCTTTCATTCCAGAATGGCCCCCAT
GGTGTCATCGCATTCAAGGAACCATAGCTCAAGACGATGGCTCCTCTTGT
CGCCGCTGCATCGTGAATATTTGTCTGAGAGCTATTTGAAATTGATCTAA
TTCCACATGACGAAGCAGATTCACATGTCCCACGTTCGTTTTCAGAAGAC
ACGGATGGCCGGACTCTACGCGACGTTGATGTTGCCAATGTAGGTGTTCT
GTGTAGCCTCGGAGCCGTCTATGCGCGAAAGCGCATGCAGCGTTAACGAA
GTCCACTGGTGCACTTGTGTCATGATTCGCCGAAGGCATACCGTGGCAAG
CGCAAGCTCGGGGGCGGTGGAAGGGCCCCTCGTTGGCAGAGCGTTCGGAC
GGCCGGTAGGGCGCAACCAAACTACGCGGAAAGGTGAGCGAGGTAGTGCG
ACATGATGGTACGTCCAGCGTGTTCGACAGGGCCGGATGCGTGGATTACC
CGCTTGCGATTTTCCTCTGAGATTCTAGTTTCGCTTTTGTCCATCGTTTC
AAGCTGTAATGCTTGTAACACCCACTTTTGCCCTGAAGTGCCCTCGGTAG
GAATTCGAACAACCCTTGTGGCCTGACAACTTGTATAGAACTGCAACCCC
ATCCCCCAGTGTGGCGCTGGACGTCAACCCAGAGGAGAAGGTATTCGCGT
TCGTCGCTCACCCGACAGCCACCAGCGTCGGCCCTCGTCAGCCACGTATG
TAGGATCCGCAACCCGTCCAAATCTCAGAGCAAAATCAACAATCGAAACC
TGCTTGGGTGAGCTTGTTGGACCACCCTGCTGCTTTACAGAGCATCTTCA
TTTCGAACTGAATCCTGGGGCCAAGAGATCAGGCACAGGGCATGCCACTG
CGTGAAGTTTCACCAATAGACTGAATCTTCACGCTTCCAGAGGTTGAGAC
AGAGCAGAGAGCGCACCCTACACAAGCACGCGAATAGCTTGCTGCCTGCA
CCAGCCGGCGCGCTCAGAGTGGGCTATATAGTCTTCCTGGATCTACTAGC
CTTTGTCACACAAATTCCAACCCAAAAACGGTATTCTGAAGGAGTAACGA
GCGTGGGATGTAGATGGGCAATATCACGGGAAAATACGGGGACAAGTTGT
GCAACTTGCCTTCAAACAAGCCAACGAAAACAGAACAGCCAGACTCCCAC
CCTAGGTGCTTCAAGGTGCAACTATGGCTGCAATTCTCAACGCCTCGAGA
GACTTAGAGGTTTCGAACAAGCCCATGCCCACACGCAAAAGGTCGGTGTG
AGGCTCTGGCGAGGCCTGTGGACCGTAGGAGCTGGTTTTTGGGGCTCGCT
GTCGAGAGCACCTCGGCGATCTGGTCTTCATCAAAAACATACAACAAGAG
AAGCGAGAGGAGAGTGCCTTACATCGACTTCTTTCCTCTTGGGGAGAGAA
TCAACGCAAGAAAGTGCAGGCGACCACCTGTGTTCACTCTCTGTCCGTGG
CAATGTGGGGTTTGTTGGTCATCTCGAACCTAGCTTGCTTGTGAAACGAG
CGAACCCAACATGACGAGATGGGCCTTGCTTTCTCGTTTTCCCAACGGAA
AATCAAGCACCAGTAGACTGGATCTTTCGTGTAGAATGTCAGACAACCGA
AATAGGGCACACAGCACACCAGCTGCTGCAGCGCTTGCAAGCAGCTCCCG
TGTGCAGCGACACGTGCAGCGACGCGTGCGCGATGAGCGCATGGATCCAT
GATACCCAGTGTGGTGAAAAACGTTCAGATCGGTTGCTCCTTTCTCGCCC
AAAGGTGATGGAAAATCTGCTGTCGTTTCGATTGACCGCAAATTCCAAGA
AAGTTGTATCATTTTATCTTTGTTTTTCTATGTTGGACAATCAAGTGGCA
AATCTCCGACAAATTTTGAGTGGAGGCAAAAGGCAGTGTGCTTAAGCCTC
TTGGTTCCCACCTGATGGTAGAACCTTGAAGACTGTCACCCTTACTCATT
GATTCCGACTGAATGAGCTTGCTCTCACTCAGGTTAAACATATCACGAGA
CATCATGAACCAAAACGGCGAGGGTTTCAAGGAGCAAAACGAGAGCGCGC
GTCGGCGAGAAAGGGCAAACAACTTGTTCGAGAAAAAATAACTGTTGCTG
AAAAACTGTTCGTTGTACAGCATGGCTCTCATCCTTGCTCTCTCGCCCCG
GCAGTTGTGGATGCAGAGTGAAACGTAGCGACAAAGTCAGCAGATAACCA
AACTACACGGCCACCGACGGAAAACACTGTTAGAGGTGGAAGCCCAGAAA
GTTTTGGCTTCACCCTCGACCTGAGAGGTCAGAGATTGATTGGCGTAGTC
ATCCCCTTTCACGCCCATGCTGGTGATTTTGTTGTGTACAGATAAACATG
TCTCTTTTTGTGTTGACACAAAAACGAAGACCAGCCATACGCTGACGCCT
ACCACGAATCAACGGTCTGAGGGTGGCTGCATGGTACAGGGCAACCTCTG
GCGGTCACCCTACTGTGGGAATTACGGCTGCTGTCGTTGATGTATGCTTT
CAGGCGTGGAGCGTGCTCGTTTTTTTCTTGTTTGCTTATTTGAAGGCAAG
TTGACGACTTTTCCCGTTTATGTTCAGCGATATTTCTCAGAGAGAGCCAT
CTACATCCCACGCTCGTTACTCCTTCAGAATACCGTTTTTGGGTTGGAAT
TTGTGTGACAAAGGCTAGTAGGGCCAGGAAGACTATGAAGCCCACTCTGA
GCGCACCGGCTGGTGCAGACAGCAAGCTATTCGCGTGCTTGTTTAGTGTG
CGTTCTCTGCTCTGTCTCAACCTCTGGAAGCGTGAAGATTCAGTCTATTG
GTGAAACTTCACGCAGTGGCATTCCCTGTGCCTGATCTCTTGACCCCAGG
ATTCAGTACGAAATGGAGGTACTCTATAGTAATTGGGGCCCGCTCGAGAC
GCCGCACGAGAATAATATGCTTTGATGCGGCATTTGATGATATCAAAGGC
TTAACAGATGACACCTGTGTACCTGTCCCTTCACGCAGATCTGCACTAGC
TGTGACATACATGCGCGGTCACATACACATGCAATGTACAGATATCACTA
TCTAGCTGTTGGGTTCGTTCTGCAACGGTACCTGTACTTTACCCCCTGAA
AGGATGCTTTCGAAAACCTCCAAAACGAGTCGCGAGATGAAACCCACAAC
ACCGTCGTTTTCGTCGGGGATGACTTCAATTTCGGGAACACATTGGTACA
CGATCGGCGCCTGCCAAAGCTATGCAAAGCCATACTATTTGTATACCCAA
GTGCGTGTCGAGTGCGATTGCTGGTGCACGTGCTCGTTTCTGTCCGTTAC
TGATGGTGCGTTGCATTCAGAATTGTGTACTCAAGGCCACCTGCAGGTTC
CAATTTATGCTGGCGTTTTACCGGGCTGTGACTGACGTCTGGTCCTGGAT
CATCCGATAAGCGTTGCGGAGTCGATGTCTTTCAATGAAATACGAGGACC
GAAACCCGTTTCGGTCTTCTTCACTTTCACCACGTTGTTTTCCCGTTCAT
ATGTTGAGCTAGAGTATAGCGGACGCACGCCCAACAGGCAGGAGGGTAAT
CGGGGAGGTAAACATGACGAACGACACAAGCCGTTGACGGAAATATTCCA
TTGCCCAATTTCCGTATATCAAATTTCCGCGGAAAAGTCCCAATTCCCGT
CCTTCCGAGTTACCGCGGAGCACATTCCCGCAAGAACAACACAATCCCAT
CTACCGTACAGAAAAACAAAGTGAATCACCATGCGCTACAGTAGTGCCCA
TGTGCCCCTCCAGGCGAGCAAATGACAACCGTCACAGACAGACTTGTCGA
GGACAGGAGTTCGAGCTTCACTCCCCTCCTTTCTCTCCGACCCTGTTCTC
GTTTCCTTTGTCATTTCAGATTTTGTGTTTTCTTGTGTTTTTTAGCTCCC
TTGTTGCCTGATTGACAGGGCTGAGTAAGGTGTTCATGGTTTAATGTTTG
ATGTTGGGGTCTGTTGCGTAGGTTTGCTTCTTGTTTGTGTGCCAAACCGT
GGAATTCCACCGTTGTTTCTCTGTGGATGAGGAAGGCGGCGCTTGCGTGT
TGCCGAATCTGCTTATGACATTATTTCTTGGCGCATAGCTAGGCACGTCG
TCGCTGGGGGAAGAAGGTCGGATCCGGTAGACTTCATGTATAAAAAAATC
ACGCATGCATACAAATGTGTGACCACGGGTTGGAGTAAAAGGTACGAGTG
CTGTGGGCGCTGATTTCAATTGAAGACAACGCCCCCCCCCAAAAAACCAG
ATGATTACAAAGAATAGTCCAGTCTATATGGAACAAAGCAGCTCCGCAAT
GACCGCTTGGCGGTGCCGTTTCGACGCGTATGCTGGCTGACCGTTGGGAA
GGATGAAGGATATATCGAATCTGATCTTGAGCATAGCAGCTTTTGGACGT
TCGGTGAACCTCGGTCGTGAAAAGGAAGATGAACGCCCGAGAAAGGGTGG
AGTTCCAGTTTCTTTTTAGATGTGGAGAGAGTTCGATGAGTAGCCGAAGA
AACACCTTTCCTTTTGTCCGATTGACTCCTGGAGTATTGTTGCGAACGCG
GGATACCGAAAAGCAGCAGATTACGTTGTTCATTGCTCGACTCGGATGAC
CTTGTTCAGTGGTCTGGTGCGGATGGAACATGAACGTTTCGGGGACATGC
GCGGAAGAACTGTTATGGTTTTGGGCACGAAAGATGAAATTAAACTGGTT
TCATTGGATAACATGCTGTGAAACACGACTGGCATCAGGTGTAAGGTTTG
CTGGTGAAAGGCCATGCCGCTGCATTGAAGAGGCGGCGACAACACATCGC
TCGCATGGAATACAGAAACGTATGCACACGCACGTGTGGAGGTTGGGGTA
TAGATTTCAGACTGCATTGTGGTCGTATGCATAGTGCAGTTTTTTACTAT
TGTTGTGAGGCAAGGATCAATGAATAAGATTGCGTGATCATTCTGCAGTT
TGATGATCTACAAACATCATAGTCCATAACCATCTGTAGAACAAGGGTGG
CAAAAGGTGCACCTTTCTGTGGAATGTAGTGGCAATCTTCCCAATTCTTG
AGATTTTCATGCGCTCTCCCATGTCGTATGTCAACTAGACTACATGGTAT
GTAGGATTAAAAGAAACGGCAAACAAAGCTTGAAGCACACTAAAATCACG
ATGTGCTTCTTGGGCTACCCTGGGCTACTGGTCTCTCGTCATCGATTCGA
CACGTCGATCGAAATGCTGGGCACAATCTGCGAACTGATGGTATCTCCTC
GCCTGTCAGTTGAATCTCCCCTCCTGTTTTTAATGGCCCTCGTCTACGTC
AACATCGACTGTCAGTCCTACAAGAGAGCCGTCGAAGCGCCAACGGAAGG
CCTCCGAATCAGGGACAGGGGAACGGGGCGGGGGTGGTGCGGCGGTGCAG
TACCGAAGACGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig863:13903..20867-

>mRNA_Ecto-sp13_S_contig863.20070.1 ID=mRNA_Ecto-sp13_S_contig863.20070.1|Name=mRNA_Ecto-sp13_S_contig863.20070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig863:13903..20867- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATCTTCTCGTTTTCAAGTCGAGCATTGCGATGTTAATGTGGCGAT
GAAGGCCGGCGAGTCAGAAATTTCTGAAGATACAGAGGAACACAACACAT
CACCCACCGTGGAAACGACTCCAGAGGTTGGAACCACCCGTCAAGAGGTA
GATTCATCTGGGTCAGTGGGAGGGTGTCTCGACCAACCGGGTGCTCGGCC
GAAGTCGCGACGACATCACGACACCACCGGAAAAGATCCAGGAGAGCGGG
AGCACGAGGAGGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAG
GAAGAGAAGGAGGGGGAGGAGGGGGAGGAGGGGGAGGAAGAAGAGGAGCT
GGAGGATAAGGCATACCGTGGCAAGCGCAAGCTCGGGGGCGGTGGAAGGG
CCCCTCGTTGGCAGAGCGTTCGGACGGCCGGTAGGGCGCAACCAAACTAC
GCGGAAAGTCCTACAAGAGAGCCGTCGAAGCGCCAACGGAAGGCCTCCGA
ATCAGGGACAGGGGAACGGGGCGGGGGTGGTGCGGCGGTGCAGTACCGAA
GACGGTGA
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