mRNA_Ecto-sp13_S_contig8620.20055.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8620.20055.1
Unique NamemRNA_Ecto-sp13_S_contig8620.20055.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8620.20055.1 vs. uniprot
Match: D7FYY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYY2_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 1.780e-128
Identity = 197/210 (93.81%), Postives = 205/210 (97.62%), Query Frame = 1 
Query:    1 MMMMMGAMRGVRRSLCVVVSLVLLSAVCVSAGKLWGVDVGKKEDKGEFASLLNKATGMDRGAGAGGGIGDEVGSILAQVADMDLSQLSLSELGTNIIDAFLETIKDDQFISQFAEPGVVGELAQNSGLSALLGEDGMASVERDDLLALMALEDSPILYKTKFYEIVDKFIGKMVAFRMDVADPVKLRRLVLETLQAAGLDQPTIAQVLEV 630
            MMMMMGAMRG+RRSLCVVVSLVLLSAVCVSAGKLWGVDVGKKEDKGEFASLLNKATGMDRG GAGGGIGDEVGSILAQVADMDLSQLSLSELGTN+ID FLETIKD+QFISQFAEPGV+GELAQNSGLSALLGEDGMASVERDDLLAL+ALEDSPILYKTKFYEIVDKFIGK VAFRMDVA+PVKLRRLVLETLQAAGLDQP I Q++EV
Sbjct:    1 MMMMMGAMRGMRRSLCVVVSLVLLSAVCVSAGKLWGVDVGKKEDKGEFASLLNKATGMDRGDGAGGGIGDEVGSILAQVADMDLSQLSLSELGTNVIDMFLETIKDEQFISQFAEPGVLGELAQNSGLSALLGEDGMASVERDDLLALLALEDSPILYKTKFYEIVDKFIGKTVAFRMDVANPVKLRRLVLETLQAAGLDQPMITQIMEV 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8620.20055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYY2_ECTSI1.780e-12893.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8620contigEcto-sp13_S_contig8620:2578..6631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size630
Hectar predicted targeting categorysignal peptide
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002920.1
Cds size630
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8620.20055.1prot_Ecto-sp13_S_contig8620.20055.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8620 2578..6631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464134.828699-CDS-Ecto-sp13_S_contig8620:2577..27091681464134.828699-CDS-Ecto-sp13_S_contig8620:2577..2709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8620 2578..2709 +
1681464134.8454416-CDS-Ecto-sp13_S_contig8620:3294..33801681464134.8454416-CDS-Ecto-sp13_S_contig8620:3294..3380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8620 3295..3380 +
1681464134.860855-CDS-Ecto-sp13_S_contig8620:4133..42391681464134.860855-CDS-Ecto-sp13_S_contig8620:4133..4239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8620 4134..4239 +
1681464134.8723793-CDS-Ecto-sp13_S_contig8620:4993..51011681464134.8723793-CDS-Ecto-sp13_S_contig8620:4993..5101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8620 4994..5101 +
1681464134.882037-CDS-Ecto-sp13_S_contig8620:6029..60991681464134.882037-CDS-Ecto-sp13_S_contig8620:6029..6099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8620 6030..6099 +
1681464134.8917842-CDS-Ecto-sp13_S_contig8620:6503..66311681464134.8917842-CDS-Ecto-sp13_S_contig8620:6503..6631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8620 6504..6631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8620.20055.1

>prot_Ecto-sp13_S_contig8620.20055.1 ID=prot_Ecto-sp13_S_contig8620.20055.1|Name=mRNA_Ecto-sp13_S_contig8620.20055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MMMMMGAMRGVRRSLCVVVSLVLLSAVCVSAGKLWGVDVGKKEDKGEFAS
LLNKATGMDRGAGAGGGIGDEVGSILAQVADMDLSQLSLSELGTNIIDAF
LETIKDDQFISQFAEPGVVGELAQNSGLSALLGEDGMASVERDDLLALMA
LEDSPILYKTKFYEIVDKFIGKMVAFRMDVADPVKLRRLVLETLQAAGLD
QPTIAQVLEV
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mRNA from alignment at Ecto-sp13_S_contig8620:2578..6631+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8620.20055.1 ID=mRNA_Ecto-sp13_S_contig8620.20055.1|Name=mRNA_Ecto-sp13_S_contig8620.20055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4054bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8620:2578..6631+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGATGATGATGGGAGCGATGCGAGGGGTGAGGAGGAGCTTGTGTGT
GGTGGTGAGCCTGGTGCTGCTCTCGGCGGTGTGCGTCAGCGCCGGGAAGC
TGTGGGGCGTCGACGTCGGAAAGAAGGAGGATGTGAGCAAAACTCTGACA
GGACAGAGAAGCGGTGTCGTTATCTGGCAGCACTGGCTGCCGTTTCGAAG
ACTGTCGAGGAGGCCACTCTCTCGTTTTTATTTTGAGCGTACAAAGAAAA
TCGAGCGAGCCTTTGACGATAGGTCCATGTCGTACGGGAAGGACGTGGGA
CAAGGTGATGGTTTTGCCATTGTAGTGATGCGTAACTCCCGAGGCTGTTG
TTGCTGCTAACCACACAAGTTGTGCAGCATCTTTCCACTATCGAGTAGCG
TTGGACAACTTCAGCGATGGGCACTCATGAGCAGCACATCAGCGGTCGTC
ATCAGAAGGGAAAAAGAGCATAGACCCGTCGTCTTTGTTCCAGAGTCTCA
GCATTCACTCTTGGTAGCTTTCCTTACCCCGAAGACGCAGTCGTTTTTTC
CTTCTTTGTTCCTACGGGTGTATCCTCCATGAGGTGCCCTGGCTAGTATC
GTGAACGTGTCAAGTATAGTACGTGTTTTGGTGTTGCGTGTTTTTTGCCC
AGACTCGACCCTCTTGCCCCGTCTGCGTGGCCTCCCTGCCTGTCTTTCCG
TCTCGACGGTTACACAGAAGGGGGAGTTCGCATCCCTGTTGAATAAAGCC
ACCGGGATGGACCGGGGAGCCGGGGCGGGCGGCGGCATCGGGGACGAAGT
CGGGTGAGAAGGGTGAAACAAGACACACATACAACGCGCGTGAAGGAGAG
TTCCACCTTGTTCCCAATAGAGCTCTGGGCCCTTGCTTCCGTAGAGCAAG
CAGCAGTGCTTTTCCGGACGACGGCAATACGATGCCGAATGGTTGTGTGA
GACTTGCGCGTATGTTTTGTGTGTGTGTCTTTTTACTGGAATCGACCCAT
GTGTGTTTATTTTGTTGTTGTTAGCATTGACCGCGCTAGCCGGCTGGCCA
ATTAAAGTGTTCTTGTGTGTTTTGTTGTTGGCATGCGCAGCGCCATCCGT
CAATGACCTCAGTCTCAAGGCGGCGGCTACAGAAAACGCCTTTCGAGACA
ATCATCTGGGGCCCTGTGACCAGGCTGTTCTCCGGAACGCACGTATCTAC
CAACGTCTCTACTGCGTCCTTTTGCCTCGCTGAGTGTATTGTTGCTAGTT
TCGTGTGCGTGCCCGTGCTCAGTGTCTCATTCCGTCTCGGCTAGGTCGAT
CTACTTGTTTTTCTCTTTGGACCCGCCAGCACTGCCCAACTTTTGTTGCG
CGCGATTTGTCATTCCCGCTTTCGAGGCGAAAAATTGCTCCTTTGCGAAA
CATCAACAGTTGGACCCTTCTTGTCTACCCGCGCGCGCTTTATCCACGGC
GATTGGTAAGAGTTTTGCGACGTGTTTAGCCGTACTGATTTCTTTTATGC
GTTAAACAGACACGTGTTATGCTACGGCGTTTTCCCCCACCCCCTTCCCT
TTCCAGCTCGATACTGGCACAGGTTGCGGACATGGACCTGTCGCAGCTGA
GCCTTTCGGAGTTGGGCACCAACATCATCGACGCGTTTCTGGAGACCATC
AAGGACGACCAGGTAAGCACGGAAGATGGGATCGGTCCCGCCGTCGTCGT
CGCCCGTGTCGCTGGTGCCGTTGGGGTACTTGCTGGGTGTGGCCGTTGAT
GTGTTTTCCCTGGTGTGGCTGCTGTTGGTTGTGGTTGGGTCTTGAGTGAA
GTTGTGATGGGTTCGTGTTGTTTGCCGGACGAGCTCTCTTGAAGAGAGAA
ACGAGTCGCCGTTCTCGCGCGGACACGGCACGTGGCGACGTGGGGGCCGA
GGCCCCGGGTTTCCGGCCATGACCGGGGATAGGGTACAGGGCAGGTGAAG
CGGGTAGTAGCGCTCGGCGACACCTTGACTGGACGTGAAGCGGGTAGTCG
AGTCATTCACGTACCTCTTGGTGTCAGATGTTCGATTCTTTGAACTCCTT
CTTTTCCGGACAAATAGATAGCTCGTTGTGTCGGGAGATCGATTTTGGGT
AGTCCCTTGGAACAAGTATGTACGGGGTGCCGACGTCGCCCTCTTGATCA
ACTTGTCGACCAATTCACGAACGACTCGCGTTTGCGCTTCCAGTGCTGAA
ATGGGCTGCGATTGTTTAGACCTAATGCTTGGTACATGGCGATATTGTAG
TGCGCAAGGCGTGGTTCGCCTTTCCCCTGGAGTCTGCAGGTCTAACCTTG
ACGCGAAGAGCGCCCCATTACATCCCTCTCTGTCCCACGCTGCCTGTCCG
TCCCTAATCCTCTCGCCCTCTCTTTCTTTCTGTTCCTCTCTTGTCCTGGT
TGTGCGCGAACACCAGTTTATCAGCCAGTTCGCGGAGCCAGGAGTGGTGG
GGGAGCTTGCTCAGAACTCAGGGCTCAGCGCACTTCTAGGGGAAGACGGC
ATGGCCTCTGTGGAGAGGGATGATGTGAGTGGCGCGTATCCCGTACCGTA
ATTGTATCCCCTGCAACTTTTTCCGAACCGCATACCACACGTAGAGTTCC
AGCAGCAGAGGATAAGTTATCGTGTAGCACAATCGCTGGCGGTCGCGCGG
GGAGGTTGCACAAAGGATGAATATTTGCTGCACGTGTAGGAAAGCGCGGA
TGGAGGGGGTTCCGCAGGATTCAAGGTCTAGGGGAGGCGTTTTGTGTTTT
CTTTCTGTGTTTTTTCTTGCAGCAAGAGTGTTGTGCCGGGTTTTCGCTAC
ACAGCAGTAGTAGCCCGCGGCACTACTTCTGCAGTAGTGTCATCTCTTTC
CCCGAACCGCGGTGTGCGTGGGTGGTCACTTTTTTTTTCCGTACCAAGCC
CTGCTGTGTACCATACCATACCATGCCGATAGGATAGTGCCGTGTACCAG
TGCCAGTCCGTGGTACAACGTTCACGCCAGGTCGCATCATGCCGTTGTTG
CGAGACATGGGGACACCATGTCGAATGGTCCTCTCTGATGTGCAGCGGAT
AGGTGCCCTACAGCCGGATGCGCTGCTGTTGAACGAGCGCTTTTTATTGG
AAGATTTGATTGATTCGAGAGAAACGGATTCAGAGATGGATGTAAAGCCT
ACGCCTTGCCCTTACAAACTGCACAGCGTACCCTCCCCTGAGACCTGCCA
CTACTCTGGTACTGCTGTTGCTGAGATGTTTTATTTGCGGTACCACATCA
CTTTTAGCATGGGTCCACCAGTTGACGACGGTGTTGTTGATGGTACACCA
GTTTGTATTTATTCTAGTTTTTGACTGAGAACATCACATTTGTTCTAATC
CGGGTGTCGCTCTTAGCTCCCCATCTTGTGCTGCCCCTTTTTGCCCTGTA
TGTCGTTTCTTCGCGTGCCATCATCTCTCTCTCTCTTGTTATTCGTTCAC
AGCTGTTGGCGCTCATGGCTTTGGAGGACAGCCCTATCCTCTACAAGACC
AAGTTTTACGAGATCGTGGACAGTGAGTAAAGAGGGACAGACAGGCAGAG
ACAGGAGGGATAGAGATATCGTTTTGAAGAGGCATGGCGGAGCATGGGGT
ATCTCACAGTATTTCGCTTGTTTTTTTGTGCAGGAGGCAGTCGATAAACA
CCGCGAACCAACCAGATCAAGAGAAAGAGAGAGGCTTGGATGTGCCCCCA
ACCCCTTTCTCCCCACTCCCTTTAGGGGCATCCCCTCTTGTCACTCGAAC
ATGATTCGGGCGTTCTGTACCTACTTACATTATATCCTTCCCTCCACTGA
TGAAAATTCCCTCGTTTATAGGTGGGAGTTTGGGATAGATTGATTGCACA
GCGTCAGCTCATGAACCCCATATCAATCTATCGGGCCTCCGTTTTTTTTT
TTTGCTTATTTTTCCTGTGTCGTCAGAGTTTATCGGGAAGATGGTGGCCT
TCCGAATGGACGTCGCGGACCCTGTGAAGCTGCGGCGCTTGGTGTTGGAA
ACGCTGCAGGCTGCCGGACTCGACCAGCCTACGATTGCCCAGGTGCTGGA
GGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8620:2578..6631+

>mRNA_Ecto-sp13_S_contig8620.20055.1 ID=mRNA_Ecto-sp13_S_contig8620.20055.1|Name=mRNA_Ecto-sp13_S_contig8620.20055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8620:2578..6631+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGATGATGATGGGAGCGATGCGAGGGGTGAGGAGGAGCTTGTGTGT
GGTGGTGAGCCTGGTGCTGCTCTCGGCGGTGTGCGTCAGCGCCGGGAAGC
TGTGGGGCGTCGACGTCGGAAAGAAGGAGGATAAGGGGGAGTTCGCATCC
CTGTTGAATAAAGCCACCGGGATGGACCGGGGAGCCGGGGCGGGCGGCGG
CATCGGGGACGAAGTCGGCTCGATACTGGCACAGGTTGCGGACATGGACC
TGTCGCAGCTGAGCCTTTCGGAGTTGGGCACCAACATCATCGACGCGTTT
CTGGAGACCATCAAGGACGACCAGTTTATCAGCCAGTTCGCGGAGCCAGG
AGTGGTGGGGGAGCTTGCTCAGAACTCAGGGCTCAGCGCACTTCTAGGGG
AAGACGGCATGGCCTCTGTGGAGAGGGATGATCTGTTGGCGCTCATGGCT
TTGGAGGACAGCCCTATCCTCTACAAGACCAAGTTTTACGAGATCGTGGA
CAAGTTTATCGGGAAGATGGTGGCCTTCCGAATGGACGTCGCGGACCCTG
TGAAGCTGCGGCGCTTGGTGTTGGAAACGCTGCAGGCTGCCGGACTCGAC
CAGCCTACGATTGCCCAGGTGCTGGAGGTT
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