mRNA_Ecto-sp13_S_contig85881.19999.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85881.19999.1
Unique NamemRNA_Ecto-sp13_S_contig85881.19999.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85881.19999.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.270e-14
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 YDMKLMLFIGVDSENKTIVFAQGFFSDERTASFLWALEHYVEICGGRHPEV 153
            Y M  MLFIGVDSENKT+VFAQGFFSD+ + ++ WAL+HY  ICGG+ PEV
Sbjct:  153 YGMHFMLFIGVDSENKTVVFAQGFFSDQSSDTYQWALKHYCTICGGQ-PEV 202
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BLAST of mRNA_Ecto-sp13_S_contig85881.19999.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 4.270e-11
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 YDMKLMLFIGVDSENKTIVFAQGFFSDERTASFLWALEHYVEICGGRHPEV 153
            Y+ KL LF+GVDSENKT VFAQGFFS+E T +F +A + +++ICGG HP+V
Sbjct:   96 YNNKLCLFVGVDSENKTQVFAQGFFSNESTEAFDFANKFFLDICGG-HPKV 145
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BLAST of mRNA_Ecto-sp13_S_contig85881.19999.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.740e-7
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 YDMKLMLFIGVDSENKTIVFAQGFFSDERTASFLWALEHYVEICGG 138
            YD KL LF+GVDSENKT +FAQG  S+E+ +SF +A    +EI GG
Sbjct:  869 YDFKLCLFVGVDSENKTGIFAQGLLSNEQISSFDFANRFLLEIRGG 914
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BLAST of mRNA_Ecto-sp13_S_contig85881.19999.1 vs. uniprot
Match: A0A015IEW1_RHIIW (MULE domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015IEW1_RHIIW)

HSP 1 Score: 48.5 bits (114), Expect = 4.210e-6
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    7 MKLMLFIGVDSENKTIVFAQGFFSDERTASFLWALEHYVEICGGRHPEV 153
            M L +F+GVD++N T +FAQ   SDE +AS+ W LE  +E   G  P +
Sbjct:    1 MALCIFVGVDNQNYTRIFAQALLSDEISASYTWVLEQLLEANNGITPTI 49
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BLAST of mRNA_Ecto-sp13_S_contig85881.19999.1 vs. uniprot
Match: UPI001E695B2F (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E695B2F)

HSP 1 Score: 49.3 bits (116), Expect = 2.180e-5
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 YDMKLMLFIGVDSENKTIVFAQGFFSDERTASFLWALEHYVEICGGRHP 147
            Y   L++F GV+  N+TIVFA G  S+E   +++W LE ++E+ GG+ P
Sbjct:   46 YLCPLVIFSGVNHHNQTIVFATGLVSNETEETYVWLLEQFLEVMGGKAP 94
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BLAST of mRNA_Ecto-sp13_S_contig85881.19999.1 vs. uniprot
Match: U9USP2_RHIID (MULE domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9USP2_RHIID)

HSP 1 Score: 48.5 bits (114), Expect = 3.620e-5
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    7 MKLMLFIGVDSENKTIVFAQGFFSDERTASFLWALEHYVEICGGRHPEV 153
            M L +F+GVD++N T +FAQ   SDE +AS+ W LE  +E   G  P +
Sbjct:    1 MALCIFVGVDNQNYTRIFAQALLSDEISASYTWVLEQLLEANNGITPTI 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85881.19999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE1.270e-1468.63SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI4.270e-1162.75Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5K454_9PHAE3.740e-758.70SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A015IEW1_RHIIW4.210e-644.90MULE domain-containing protein n=1 Tax=Rhizophagus... [more]
UPI001E695B2F2.180e-542.86protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Trifo... [more]
U9USP2_RHIID3.620e-544.90MULE domain-containing protein n=1 Tax=Rhizophagus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85881contigEcto-sp13_S_contig85881:272..430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score63.9
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog2880.D7FLF6
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2CMGX@1,2QQB8@2759
Cds size153
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464129.7712083-UTR-Ecto-sp13_S_contig85881:271..2771681464129.7712083-UTR-Ecto-sp13_S_contig85881:271..277Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig85881 272..277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464129.784248-CDS-Ecto-sp13_S_contig85881:277..4301681464129.784248-CDS-Ecto-sp13_S_contig85881:277..430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85881 278..430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85881.19999.1prot_Ecto-sp13_S_contig85881.19999.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85881 278..430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85881.19999.1

>prot_Ecto-sp13_S_contig85881.19999.1 ID=prot_Ecto-sp13_S_contig85881.19999.1|Name=mRNA_Ecto-sp13_S_contig85881.19999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MKLMLFIGVDSENKTIVFAQGFFSDERTASFLWALEHYVEICGGRHPEVR
C
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mRNA from alignment at Ecto-sp13_S_contig85881:272..430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85881.19999.1 ID=mRNA_Ecto-sp13_S_contig85881.19999.1|Name=mRNA_Ecto-sp13_S_contig85881.19999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85881:272..430+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACGACATGAAGCTGATGCTGTTCATAGGAGTGGACTCGGAAAACAAGAC
CATCGTGTTCGCGCAGGGGTTCTTTTCCGATGAGCGGACTGCCTCGTTCT
TGTGGGCACTGGAGCACTATGTCGAAATATGTGGGGGGAGGCACCCGGAG
GTGAGGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85881:272..430+

>mRNA_Ecto-sp13_S_contig85881.19999.1 ID=mRNA_Ecto-sp13_S_contig85881.19999.1|Name=mRNA_Ecto-sp13_S_contig85881.19999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85881:272..430+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCTGATGCTGTTCATAGGAGTGGACTCGGAAAACAAGACCATCGT
GTTCGCGCAGGGGTTCTTTTCCGATGAGCGGACTGCCTCGTTCTTGTGGG
CACTGGAGCACTATGTCGAAATATGTGGGGGGAGGCACCCGGAGGTGAGG
TGT
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