mRNA_Ecto-sp13_S_contig8561.19969.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8561.19969.1
Unique NamemRNA_Ecto-sp13_S_contig8561.19969.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: D8LU37_ECTSI (E3 ubiquitin-protein ligase listerin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU37_ECTSI)

HSP 1 Score: 439 bits (1128), Expect = 2.860e-152
Identity = 242/256 (94.53%), Postives = 244/256 (95.31%), Query Frame = 1
Query:   40 MKEKKKEGAGGRPRGSRKNIVGSESQGLLQAAAGTGFIGFSAFQTAAKVSPTTADVEGGGTAGSTPGGKAGAGSGHGGKRRVKTAQVTGGYSAGSAGQPVLPPHYSGSDSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPE 807
            MKEKKKEGAGGRPRGSRKNIVGSESQGLLQAAAGTGFIGFSAFQTAAK SPTTADVEGGGTAGSTP GKAGAGSGHGGKRRVK A+V GGYSAGSAGQ VLPPHYSGSDSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAE AASPQPGPGQDSRAGTSR SSGV PASGAGA ESSAM  PATSAE+LGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLK NRRAFQPLMSSLMGPWFCSQADTAPE
Sbjct:    1 MKEKKKEGAGGRPRGSRKNIVGSESQGLLQAAAGTGFIGFSAFQTAAKASPTTADVEGGGTAGSTPAGKAGAGSGHGGKRRVKMAKVNGGYSAGSAGQ-VLPPHYSGSDSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAELAASPQPGPGQDSRAGTSRASSGVAPASGAGAAESSAMDTPATSAEDLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKGNRRAFQPLMSSLMGPWFCSQADTAPE 255          
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: A0A835ZGR8_9STRA (E3 ubiquitin-protein ligase listerin (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGR8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.570e-20
Identity = 62/157 (39.49%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  340 LPPHYSGSDSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEV 810
            LPP Y G++S LA++ KRL+K+D TTKLKAL++L+ +C      AE   +PQ G                 P          A + P    +++ GL PHWV++Y RL+ + DRR RE+AN TL  +  ANR+A  P +  L+GPW+   AD A EV
Sbjct:   57 LPPFYDGTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAE---APQRG----------------TPPQQEHLHHHQAFLTP----DDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEV 190          
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: UPI00201F207B (E3 ubiquitin-protein ligase listerin-like n=3 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F207B)

HSP 1 Score: 90.5 bits (223), Expect = 7.810e-16
Identity = 73/245 (29.80%), Postives = 99/245 (40.41%), Query Frame = 1
Query:  319 GSAGQPVLPPHY-------SGSDSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSY-IDATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFL 1029
            GS G P   P         S  DS   +V ++LSKRD TTK+KAL E  A+C     E                                                 L G+ P W  +Y ++S + D R REA    +  ++   RR   P + S+MG W  SQ DT P V+SSA +AF+A FP AK+   +  C   +  + +D    QTP  L E    + EE   R  R+  S+  AL   L
Sbjct:   43 GSMGSPAYVPASESFDDVDSSLDSDFRMVLRKLSKRDSTTKIKALQEFAALCEEKGEEC------------------------------------------------LKGVLPFWPRIYNKMSIDVDHRVREATQQAMTTLVSRVRRNIAPYLKSVMGSWLLSQCDTYPTVASSATQAFQAAFPPAKQTDAIDYCKTDITEFLVDNLTTQTPATLSEPKTSSLEEMETRYNRVVTSSFLALRKML 239          
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: UPI001EE4F711 (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase listerin-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE4F711)

HSP 1 Score: 87.8 bits (216), Expect = 5.940e-15
Identity = 71/245 (28.98%), Postives = 98/245 (40.00%), Query Frame = 1
Query:  319 GSAGQPVLPPHY-------SGSDSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSY-IDATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFL 1029
            GS G P   P         S  DS   +V ++LSKRD TTK+KAL E   +C     E                                                 L G+ P W  +Y ++S + D R REA    +  ++   RR   P + S+MG W  SQ DT P VS+SA +AF++ FP AK+   +  C   +  + ++    QTP  L E    T EE   R  R+  S+  AL   L
Sbjct:   43 GSMGSPAYVPASESFDDVDSSLDSDFRMVLRKLSKRDSTTKIKALQEFAGLCEEKGEEC------------------------------------------------LKGVLPFWPRIYNKMSIDVDHRVREATQQAMTTLVSRVRRNIAPYLKSVMGSWLLSQCDTYPTVSTSATQAFQSAFPPAKQTDAIDYCKTDITEFLVENLTSQTPATLSEPRTSTQEEMETRYSRVVTSSFLALRKLL 239          
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: A0A7J7DZ04_TRIWF (E3 ubiquitin-protein ligase listerin n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DZ04_TRIWF)

HSP 1 Score: 85.9 bits (211), Expect = 2.600e-14
Identity = 74/248 (29.84%), Postives = 114/248 (45.97%), Query Frame = 1
Query:  304 GGYSAGSAGQPVLPPHYSGS----DSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFP-EAKRASVLRRCAEGVLSYIDATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFLE 1032
            GGY   S   P L    SG+    DS +AV  KRL ++D TTKLKALA L  + +               PG++           +VP                        + P W F Y+RL  + +R  R AAN T+  ++    R   P + SLMGPW+ SQ D  PEVSS+ K++ +A FP + KR   L  C   +  Y++  ++ TP+ + + S    +E  +  ++   S++ AL++ L+
Sbjct:   36 GGYIGSSRFDPSLAGSDSGTFPDVDSEVAVHLKRLGRKDATTKLKALASLSLLFKQK-------------PGKE-----------IVP------------------------ILPQWAFEYKRLLLDYNREVRRAANDTMANLVVTVGRDIAPHLKSLMGPWWFSQFDPVPEVSSAGKQSLQAAFPAQEKRLDALMYCTSEIFMYLEENLKLTPQSMSDRSAAL-DELEEMHQQAISSSLLALATLLD 234          
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: UPI0003F08DD4 (E3 ubiquitin-protein ligase listerin-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08DD4)

HSP 1 Score: 84.0 bits (206), Expect = 1.080e-13
Identity = 64/223 (28.70%), Postives = 97/223 (43.50%), Query Frame = 1
Query:  364 DSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSYI-DATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFL 1029
            DS   +V ++++K+DVTTKLKA+ E  ++C+                                                    +++ G  P+W  LY R   + DRR REA       +    RR+  P + S+MGPW  SQ DT    +S+AK AF + FP +K++  +  C E +L YI D   +QT   L +     AEE   +  R+  S+  AL+ FL
Sbjct:   62 DSDFRMVMRKITKKDVTTKLKAIQEFTSLCK------------------------------------------------DKDEDSVKGTLPYWRRLYSRTCMDYDRRVREALQQAHEQLALKVRRSLAPHLKSIMGPWLLSQCDTYAPAASAAKSAFNSAFPLSKQSEAILFCKEDILMYIQDNLFKQTAATLSDPKSTPAEEMETKYNRVITSSFLALNYFL 236          
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: A0A401RVC0_CHIPU (E3 ubiquitin-protein ligase listerin n=2 Tax=Chiloscyllium TaxID=34767 RepID=A0A401RVC0_CHIPU)

HSP 1 Score: 83.6 bits (205), Expect = 1.460e-13
Identity = 63/237 (26.58%), Postives = 102/237 (43.04%), Query Frame = 1
Query:  364 DSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSYI-DATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFLEAVGPEANSAFSRR 1071
            D+   +V +++SKRD TTKLKA+ E  AMC+                                                    EN+ G+ P+W  +Y ++S + DRR REA       ++   +R   P + S+MG W  +Q DT    +S+AK AF+  FP  K+   +  C E +++ I D  +++TPE L +      EE  ++  R+  S++ AL   L+ +    N     R
Sbjct:   62 DADFRLVLRKMSKRDATTKLKAVQEFGAMCK------------------------------------------------EKHLENIKGVLPYWSRIYCKISLDHDRRVREAVQQAFEILVLQVKRNLAPYLKSIMGHWLIAQCDTYNPAASAAKVAFQVAFPLNKQPEAVAFCKEEIMNIICDYILKETPETLSDPQSLPEEEREEKYIRIVTSSLLALKKLLDLLPENENIVLKNR 250          
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: A0A0S7JND1_9TELE (E3 ubiquitin-protein ligase listerin n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JND1_9TELE)

HSP 1 Score: 80.1 bits (196), Expect = 2.360e-13
Identity = 60/223 (26.91%), Postives = 99/223 (44.39%), Query Frame = 1
Query:  364 DSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSYI-DATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFL 1029
            D+   +V ++LSKRDV T+LKA+ +  AMC+                                                   AE + G+ P+W  +Y ++S + DRR REA       ++   RR+  P + SLMG W  SQ DT    +S+A +AF+A F  AK+   L  C + +L+ + D  +++T + L ++   T EE   +  R+  S++  +   L
Sbjct:   63 DADFRLVLRKLSKRDVVTRLKAVQDFGAMCQ------------------------------------------------ERDAEEVKGVLPYWPRIYCKISVDHDRRIREATQQAFEQLVLKVRRSLAPFLKSLMGHWILSQCDTYTPAASAACQAFQAAFSPAKQPEALSFCKDEILTVLQDVLLKETADTLSDSQSVTEEERETKYVRMLTSSLLGVKRLL 237          
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: UPI0011C3B8BE (E3 ubiquitin-protein ligase listerin n=1 Tax=Calypte anna TaxID=9244 RepID=UPI0011C3B8BE)

HSP 1 Score: 82.8 bits (203), Expect = 2.600e-13
Identity = 65/223 (29.15%), Postives = 102/223 (45.74%), Query Frame = 1
Query:  364 DSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSYI-DATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFL 1029
            D+   +V ++LSKRDVTTKLKA+ E   MC+   RE E                       VV                        G+ P+W  +Y ++S + DRR REA   +   ++   ++   P + S+MG W  SQ DT    +S+A+EAFE  FP +K+   L  C + +L+ + D  +++TP+ L +      EE   +  R+  S++ AL   L
Sbjct:   62 DADFRMVLRKLSKRDVTTKLKAMQEFGTMCK--ERETE-----------------------VVK-----------------------GVLPYWPRIYCKISLDHDRRVREATQQSFEQLILKVKKHLAPYLKSIMGYWLISQCDTYSPAASAAREAFEKAFPSSKQPEALAFCKDEILNVLQDHLLKETPDTLSDPQTVPEEEREAKYFRILTSSLLALKKLL 236          
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: K7GH91_PELSI (E3 ubiquitin-protein ligase listerin n=2 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7GH91_PELSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.600e-13
Identity = 66/223 (29.60%), Postives = 102/223 (45.74%), Query Frame = 1
Query:  364 DSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSYI-DATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFL 1029
            D+   +V ++LSKRDVTTKLKA+ E  AMC+   RE+E                               AV+               G+ P+W  +Y ++S + DRR REA       ++   ++   P + S+MG W  +Q DT    +S+AK AFE  FP +K+   L  C E VL+ + D  +++TP+ L +      EE   +  R+   ++ AL   L
Sbjct:   62 DADFRMVLRKLSKRDVTTKLKAMQEFAAMCK--ERESE-------------------------------AVK---------------GVLPYWPRIYCKISLDHDRRVREATQQAFEQLILKVKKHLAPYLKSIMGYWLVAQCDTYSPAASAAKVAFETAFPSSKQPEALAFCKEEVLNMLQDHLLKETPDTLSDPQTVPEEEREAKYFRILTCSLLALKKLL 236          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU37_ECTSI2.860e-15294.53E3 ubiquitin-protein ligase listerin n=1 Tax=Ectoc... [more]
A0A835ZGR8_9STRA1.570e-2039.49E3 ubiquitin-protein ligase listerin (Fragment) n=... [more]
UPI00201F207B7.810e-1629.80E3 ubiquitin-protein ligase listerin-like n=3 Tax=... [more]
UPI001EE4F7115.940e-1528.98LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase l... [more]
A0A7J7DZ04_TRIWF2.600e-1429.84E3 ubiquitin-protein ligase listerin n=2 Tax=Tript... [more]
UPI0003F08DD41.080e-1328.70E3 ubiquitin-protein ligase listerin-like n=1 Tax=... [more]
A0A401RVC0_CHIPU1.460e-1326.58E3 ubiquitin-protein ligase listerin n=2 Tax=Chilo... [more]
A0A0S7JND1_9TELE2.360e-1326.91E3 ubiquitin-protein ligase listerin n=2 Tax=Poeci... [more]
UPI0011C3B8BE2.600e-1329.15E3 ubiquitin-protein ligase listerin n=1 Tax=Calyp... [more]
K7GH91_PELSI2.600e-1329.60E3 ubiquitin-protein ligase listerin n=2 Tax=Pelod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8561contigEcto-sp13_S_contig8561:2282..6707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start0
Seed ortholog score90.9
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog10224.XP_006825327.1
Model size1160
KEGG koko:K22377
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGs38G7I@33154,3BHYT@33208,3CTZW@33213,COG5219@1,KOG0803@2759
EC2.3.2.27
Cds size1158
COG Functional cat.O
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8561.19969.1prot_Ecto-sp13_S_contig8561.19969.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8561 2282..6707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464127.2949507-CDS-Ecto-sp13_S_contig8561:2281..23881681464127.2949507-CDS-Ecto-sp13_S_contig8561:2281..2388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8561 2282..2388 +
1681464127.3179688-CDS-Ecto-sp13_S_contig8561:3174..34001681464127.3179688-CDS-Ecto-sp13_S_contig8561:3174..3400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8561 3175..3400 +
1681464127.3304853-CDS-Ecto-sp13_S_contig8561:3875..39971681464127.3304853-CDS-Ecto-sp13_S_contig8561:3875..3997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8561 3876..3997 +
1681464127.3435543-CDS-Ecto-sp13_S_contig8561:4317..45461681464127.3435543-CDS-Ecto-sp13_S_contig8561:4317..4546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8561 4318..4546 +
1681464127.3529954-CDS-Ecto-sp13_S_contig8561:4923..50461681464127.3529954-CDS-Ecto-sp13_S_contig8561:4923..5046Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8561 4924..5046 +
1681464127.3618734-CDS-Ecto-sp13_S_contig8561:5324..54031681464127.3618734-CDS-Ecto-sp13_S_contig8561:5324..5403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8561 5325..5403 +
1681464127.3743923-CDS-Ecto-sp13_S_contig8561:5667..57501681464127.3743923-CDS-Ecto-sp13_S_contig8561:5667..5750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8561 5668..5750 +
1681464127.3833687-CDS-Ecto-sp13_S_contig8561:6104..62661681464127.3833687-CDS-Ecto-sp13_S_contig8561:6104..6266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8561 6105..6266 +
1681464127.3944263-CDS-Ecto-sp13_S_contig8561:6680..67071681464127.3944263-CDS-Ecto-sp13_S_contig8561:6680..6707Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8561 6681..6707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8561.19969.1

>prot_Ecto-sp13_S_contig8561.19969.1 ID=prot_Ecto-sp13_S_contig8561.19969.1|Name=mRNA_Ecto-sp13_S_contig8561.19969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=386bp
ECVAGLLCVLLIAMKEKKKEGAGGRPRGSRKNIVGSESQGLLQAAAGTGF
IGFSAFQTAAKVSPTTADVEGGGTAGSTPGGKAGAGSGHGGKRRVKTAQV
TGGYSAGSAGQPVLPPHYSGSDSHLAVVSKRLSKRDVTTKLKALAELRAM
CRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAP
ATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQP
LMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLS
YIDATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFLEAVGPEA
NSAFSRRPTEHETVAQEEDEDVGRSRQETTYFNLVN
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mRNA from alignment at Ecto-sp13_S_contig8561:2282..6707+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8561.19969.1 ID=mRNA_Ecto-sp13_S_contig8561.19969.1|Name=mRNA_Ecto-sp13_S_contig8561.19969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8561:2282..6707+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTGTGTAGCTGGACTATTGTGTGTTCTGCTGATAGCCATGAAGGAAAA GAAGAAGGAGGGGGCAGGTGGTAGGCCTCGCGGTTCGCGCAAAAACATCG TCGGCAGGTATGGTATTTTCTGACGCGTACTGGTTGCCTCTGCTGCTTGG GGGTTGCCGACTGCCAATGGGTACCGCTGCGGAATGATGTTCGCGGAAAT GACTTCTTGTTGGCCTTTCTACGTACACGGGGTCTTACAAAATAGAAGTA AAAAAAACACTAGGCCTTGCTGGTCTTTCGTGGGCGAGCTTGCAGCATCT TCGAGTTCGATTTACTCAACCTTGTGCGGCTCTCAGGCGTAGTTATCGTC GACCGCCGTGCCTCGCGTTGCCTTCACAGCTGCCAGTAGCGACGGCTGTT GTTGAATCTACACGCGTAGCTTGGACTTGCACGTATCCATCACTGCTATG TTATAAACGACCCATGGGTGTCTTAGTTACAGGCCTCACAAGTGGTGCCA CTGCTAGCGTATTATAATTTTACCGTTCGTTGCCTGAGCTGTCGAGCAGC ATGCATGTTGTTGGCCCTGAAAGAACGGAAACATGCGGGGGAATCGACAC GCGGTGCCGCACACGAAACATGTCAGCGATTGTGTTTGTGTCGGACACTA CTGTACATGTATCATATCACGGCGAATGCTTTTGAAGTAGGCGTACGTAA GTGCTGCTAATCTTCACTTCCCCGCACATAACGTCTCGTGGAGTAGAGTG GTGCCCAACAGCCACGACAACTTGATCATGTGATGATCAAGGTTTGCCTG AGACCGTCATGCTACAGCTGTAGTGTTGTCTCACGCTACCCTTTTTCGCT ATCGCCCTGTCTCCCGCCTCTGCCCTTACTATTGATGCAACAGTGAGTCT CAGGGGCTCCTGCAGGCCGCCGCTGGGACTGGGTTCATCGGCTTTTCAGC CTTTCAGACCGCAGCCAAGGTTTCCCCTACTACTGCCGATGTCGAGGGGG GGGGCACCGCGGGCTCAACCCCGGGTGGCAAGGCAGGTGCAGGAAGCGGC CATGGAGGGAAACGGCGGGTGAAGACGGCTCAAGTGACTGGAGGGTACTC TGCGGGATCTGCTGGACAGGTGAGTGCTCCGGTCTTCTCCGGTGAAGTGA GGTTGTAGGGAGTGGAACGCCGGCGTATTGCTGGTGGAAGCAAACTTGAA GTCAGTTGTTTGAGGTTTAGTACAAAAGGTTGCTGCGATTTCTACGCATA CCTGATAGCATATTATTGCGTCCCTAGAACTGAAGAATAAAAAATATACT TCAAGGACAAAACACGAACAAACCACACCCCTTCTTCTACTGTTGCCCGC AGAATCAAAGGGTCGGTGTGCATAGCAAAGCGCGCGAGATGTGTTCAATA GGTGTCAGGTTAGCCGCTCTAGGCATCTGCTGTTGAGAATCCTACAAGAT ATCACTCTTGTTGCCAGGCAATGACTTGTATATATCGCAACGTACGGTAT CGATTTCCTCGTACTCCCTCTTGCGACGACAAATCGAACGATCCGACAAC GAGATATTGACATACCCGCACCTCCTGCCTGTTGGTGCCGACAGCCGGTG CTTCCTCCGCACTACTCCGGGAGTGACAGCCACCTCGCTGTTGTGAGCAA GCGGCTGTCCAAGCGGGATGTCACCACCAAGCTTAAGGCGTTGGCTGAGC TAAGGGCCATGTGCAGGTGAGTCGAAGTGTCATTAGCGAGGGAGAGAAAG CGGAGAGACAGATAGACAGACAGACAGACAGAGACGGAGACAGAGAAAGA AACAAACAGACAGGCAGTCAAAGAGAGGGATAAATAGCAGAAAGAGCTAC GGTGTTAATAATTAGGCAGCCATGCCGTGTTGGCCAATGCTACCAGGACC AGGACCATACCATAACCGCCGTGCTGAAGTCAAACGGATCACCCTGTCCC CGCTACCCTTGATCAATCGCATTCCACCAACGTTCTTTCCTCTACACCCT CGATGGGACGTGCTTTCTTTTTCTGCGTAAAAATAGGCTTGTTACTCGCG AGGCGGAGCCAGCAGCATCACCTCAGCCTGGCCCCGGGCAAGATAGCCGG GCAGGAACATCTAGAGTAAGTTCCGGGGTCGTGCCTGCGAGTGGTGCGGG CGCGGTGGAGTCGTCGGCGATGATTGCGCCGGCCACGTCAGCCGAAAACC TGGGAGGATTGGCACCGCACTGGGTTTTCTTGTACCAGAGACTGTCGGCA GAGGGTGATCGGAGGGTGAGGGCGACGCCGTAAAGACGTCGTAGTACCCC TGAATTGCAAGTGTCCGGTTAAGGTACCTGGGTTGCCTGGTTGCCACGGC TTGTGTTGGTTGACAGAAGAGCAGTGCCTAGCCTTGTTATATATTTGTCT GTAGGAATACCCTGGGGTGGTTCCAAGTGACACTCCGCGGTTGATGCGTT GTAGGCAGGTGTTGCAGCTTCGGTTCGGTGTGAATGGGTGCGGCGTTGAC ATGGCGATCTCTTGGGGCGTGTTTCGTGCAGGAGTTTGTTGACATCGTGT GTTTTCAGGGTCCCCGATTGGCAATCGACGCTGCTGCTTCTGTTCCTGCT ACTGGGATTTCTTTCCCGGCCTTCGGCCTCTCCTCGCTGCAGACTCGCGA AGCCGCCAACACGACACTGTTGTGCATGCTCAAGGCTAACCGAAGGGCGT TCCAGCCGCTCATGTCTTCTCTGATGGGGCCTTGGTTCTGCTCGCAGGCC GATACGGCACCTGAGGTAGGCGTGCTCTGAAACCGCACCGCAAGTGTTGT CGGCCGGTAGCCCGTGTGTGGAATCTCGGGTATTGCAGAGACCATCTTCC TCGGTATGTAGTGCTCACATGTCTCTTGTGGTATATTCAACCGCAGCGTA GGAGAGCACGACGAATGGCCTTGGTTTTACCTACCGACCAGGGAGAGCTA ACTGCATGTTGCTTGTTTGTCACTGCTATGGTGACCTTGGATTACCCATT ATGATTTCGACGTGCTCGTTGACGATATGTGGTGATGGTGCAGGTCTCCT CGTCGGCGAAAGAGGCGTTTGAGGCGGTTTTTCCGGAGGCGAAGCGGGCA TCCGTCCTAAGGCGTTGTGCCGGTAAGGAGAGGACCTTAACCTTAACCTT CAACAGCAGGCGGTGCCAAGTGCGAAGAAGAAAAAAAGTCGGAGGAAGCA CCGGTTCAGTTTAGCGCTCCTTGGTAGCATCACAGCCGCAGGACGGACTG GAGAAAATCTCTCTCGTATGTGCGTCTGTCAAGCAGAGCTCAGTGCATGT GTGTATGTGCTTCCTGCGCTATCCAACCACTCACTATCTATCATTTTGTC CACGCGGTTGTCGCTGTTTTTCGACCGGAAAAACAGAAGGCGTGCTGAGC TACATCGACGCCACGGTGCAGCAGACCCCGGAGATGCTGGAAGAAGCTTC TGGTTGCACCGCCGAGGAGGTGTGATATGATTACGTGATCGTGTGAACAA GTGAATCGGGTTCTCGAGGATGTCTCGCCGTGTCTACGCAGGGCGACACG CGAAATGTCGGGGGGGGGGGGGTGGGGGAGGGCTACTGCTGTTAGCATGT TTCCCTGTGTGCCAGCCCCCCTCTTTACGTCAGCGCTGGGAGTTTGTTGA ACACGGGGAGAGGTTCCGACAGGGAGCTTGGCTTATGACCCAAAAGGCGT AGTTCTTTGTTCTTGGTTGTTGGCAAGCGCGGAGATGACGCCTGGTGGGT TCTGTTATGCCATGACGTTCTTGTTTTCCCTTGTGCGCCCCCCCCCACCC CGTTATGCGCTTGTGCCGCGCAGGCGGTGAAGCGCGCAGAGCGGCTGTGT GTGTCGGCTATAGCAGCTCTGTCGAGCTTCTTGGAGGCAGTGGGGCCAGA GGCGAACTCTGCCTTTTCCCGTCGTCCCACCGAGCATGAAACTGTTGCTC AAGAGGAAGACGAAGACGTCGGTCGAAGCCGTCAGGTGAGAGTTGAGTGA CGTTAACATGAACGTGCATAGGTTGTGGGTACCCATCTACTAGTTGTCGC TGGTTTCTTTCGGAACCGGAAGACGAGGTACTATCGGCGTGCTAGGTGCA TCGTTGCTGCAGTCACTTGTGCGCGACGTGTTTGCAGGCAAGCCAGGGAG GTCGCCCTAGCTAGAGTTTAGCGTAGAGGCAGCTGGCTTCTTCGACAACT GCGGCCGACACGGCGTCAATCCCGCTCCCGAACAGCCATTTACCTGGCTC TTGTGATGACCTGCTTTTTTCGCGTTTTGCAGAGAAGATTAAAGTCACCA ACCAAGAACCAACCCTACTCCCCGCCGTGCTCGAACTACCGATGTACCTA CCTGTGGGTGCTCCCTCTCGCTCGCTCGCTCGCTCGCTCGCTATTGAAGG AGACGACGTACTTCAATCTCGTGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8561:2282..6707+

>mRNA_Ecto-sp13_S_contig8561.19969.1 ID=mRNA_Ecto-sp13_S_contig8561.19969.1|Name=mRNA_Ecto-sp13_S_contig8561.19969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8561:2282..6707+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTGTGTAGCTGGACTATTGTGTGTTCTGCTGATAGCCATGAAGGAAAA
GAAGAAGGAGGGGGCAGGTGGTAGGCCTCGCGGTTCGCGCAAAAACATCG
TCGGCAGTGAGTCTCAGGGGCTCCTGCAGGCCGCCGCTGGGACTGGGTTC
ATCGGCTTTTCAGCCTTTCAGACCGCAGCCAAGGTTTCCCCTACTACTGC
CGATGTCGAGGGGGGGGGCACCGCGGGCTCAACCCCGGGTGGCAAGGCAG
GTGCAGGAAGCGGCCATGGAGGGAAACGGCGGGTGAAGACGGCTCAAGTG
ACTGGAGGGTACTCTGCGGGATCTGCTGGACAGCCGGTGCTTCCTCCGCA
CTACTCCGGGAGTGACAGCCACCTCGCTGTTGTGAGCAAGCGGCTGTCCA
AGCGGGATGTCACCACCAAGCTTAAGGCGTTGGCTGAGCTAAGGGCCATG
TGCAGGCTTGTTACTCGCGAGGCGGAGCCAGCAGCATCACCTCAGCCTGG
CCCCGGGCAAGATAGCCGGGCAGGAACATCTAGAGTAAGTTCCGGGGTCG
TGCCTGCGAGTGGTGCGGGCGCGGTGGAGTCGTCGGCGATGATTGCGCCG
GCCACGTCAGCCGAAAACCTGGGAGGATTGGCACCGCACTGGGTTTTCTT
GTACCAGAGACTGTCGGCAGAGGGTGATCGGAGGACTCGCGAAGCCGCCA
ACACGACACTGTTGTGCATGCTCAAGGCTAACCGAAGGGCGTTCCAGCCG
CTCATGTCTTCTCTGATGGGGCCTTGGTTCTGCTCGCAGGCCGATACGGC
ACCTGAGGTCTCCTCGTCGGCGAAAGAGGCGTTTGAGGCGGTTTTTCCGG
AGGCGAAGCGGGCATCCGTCCTAAGGCGTTGTGCCGAAGGCGTGCTGAGC
TACATCGACGCCACGGTGCAGCAGACCCCGGAGATGCTGGAAGAAGCTTC
TGGTTGCACCGCCGAGGAGGCGGTGAAGCGCGCAGAGCGGCTGTGTGTGT
CGGCTATAGCAGCTCTGTCGAGCTTCTTGGAGGCAGTGGGGCCAGAGGCG
AACTCTGCCTTTTCCCGTCGTCCCACCGAGCATGAAACTGTTGCTCAAGA
GGAAGACGAAGACGTCGGTCGAAGCCGTCAGGAGACGACGTACTTCAATC
TCGTGAAC
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