mRNA_Ecto-sp13_S_contig8561.19969.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: D8LU37_ECTSI (E3 ubiquitin-protein ligase listerin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU37_ECTSI) HSP 1 Score: 439 bits (1128), Expect = 2.860e-152 Identity = 242/256 (94.53%), Postives = 244/256 (95.31%), Query Frame = 1
Query: 40 MKEKKKEGAGGRPRGSRKNIVGSESQGLLQAAAGTGFIGFSAFQTAAKVSPTTADVEGGGTAGSTPGGKAGAGSGHGGKRRVKTAQVTGGYSAGSAGQPVLPPHYSGSDSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPE 807
MKEKKKEGAGGRPRGSRKNIVGSESQGLLQAAAGTGFIGFSAFQTAAK SPTTADVEGGGTAGSTP GKAGAGSGHGGKRRVK A+V GGYSAGSAGQ VLPPHYSGSDSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAE AASPQPGPGQDSRAGTSR SSGV PASGAGA ESSAM PATSAE+LGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLK NRRAFQPLMSSLMGPWFCSQADTAPE
Sbjct: 1 MKEKKKEGAGGRPRGSRKNIVGSESQGLLQAAAGTGFIGFSAFQTAAKASPTTADVEGGGTAGSTPAGKAGAGSGHGGKRRVKMAKVNGGYSAGSAGQ-VLPPHYSGSDSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAELAASPQPGPGQDSRAGTSRASSGVAPASGAGAAESSAMDTPATSAEDLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKGNRRAFQPLMSSLMGPWFCSQADTAPE 255
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: A0A835ZGR8_9STRA (E3 ubiquitin-protein ligase listerin (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGR8_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.570e-20 Identity = 62/157 (39.49%), Postives = 87/157 (55.41%), Query Frame = 1
Query: 340 LPPHYSGSDSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEV 810
LPP Y G++S LA++ KRL+K+D TTKLKAL++L+ +C AE +PQ G P A + P +++ GL PHWV++Y RL+ + DRR RE+AN TL + ANR+A P + L+GPW+ AD A EV
Sbjct: 57 LPPFYDGTNSDLAMLFKRLTKKDPTTKLKALSQLQNLCSAAASAAE---APQRG----------------TPPQQEHLHHHQAFLTP----DDVIGLVPHWVYIYARLALDNDRRVRESANATLSHVAAANRKAVVPFLRQLLGPWWICMADPASEV 190
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: UPI00201F207B (E3 ubiquitin-protein ligase listerin-like n=3 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F207B) HSP 1 Score: 90.5 bits (223), Expect = 7.810e-16 Identity = 73/245 (29.80%), Postives = 99/245 (40.41%), Query Frame = 1
Query: 319 GSAGQPVLPPHY-------SGSDSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSY-IDATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFL 1029
GS G P P S DS +V ++LSKRD TTK+KAL E A+C E L G+ P W +Y ++S + D R REA + ++ RR P + S+MG W SQ DT P V+SSA +AF+A FP AK+ + C + + +D QTP L E + EE R R+ S+ AL L
Sbjct: 43 GSMGSPAYVPASESFDDVDSSLDSDFRMVLRKLSKRDSTTKIKALQEFAALCEEKGEEC------------------------------------------------LKGVLPFWPRIYNKMSIDVDHRVREATQQAMTTLVSRVRRNIAPYLKSVMGSWLLSQCDTYPTVASSATQAFQAAFPPAKQTDAIDYCKTDITEFLVDNLTTQTPATLSEPKTSSLEEMETRYNRVVTSSFLALRKML 239
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: UPI001EE4F711 (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase listerin-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE4F711) HSP 1 Score: 87.8 bits (216), Expect = 5.940e-15 Identity = 71/245 (28.98%), Postives = 98/245 (40.00%), Query Frame = 1
Query: 319 GSAGQPVLPPHY-------SGSDSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSY-IDATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFL 1029
GS G P P S DS +V ++LSKRD TTK+KAL E +C E L G+ P W +Y ++S + D R REA + ++ RR P + S+MG W SQ DT P VS+SA +AF++ FP AK+ + C + + ++ QTP L E T EE R R+ S+ AL L
Sbjct: 43 GSMGSPAYVPASESFDDVDSSLDSDFRMVLRKLSKRDSTTKIKALQEFAGLCEEKGEEC------------------------------------------------LKGVLPFWPRIYNKMSIDVDHRVREATQQAMTTLVSRVRRNIAPYLKSVMGSWLLSQCDTYPTVSTSATQAFQSAFPPAKQTDAIDYCKTDITEFLVENLTSQTPATLSEPRTSTQEEMETRYSRVVTSSFLALRKLL 239
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: A0A7J7DZ04_TRIWF (E3 ubiquitin-protein ligase listerin n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DZ04_TRIWF) HSP 1 Score: 85.9 bits (211), Expect = 2.600e-14 Identity = 74/248 (29.84%), Postives = 114/248 (45.97%), Query Frame = 1
Query: 304 GGYSAGSAGQPVLPPHYSGS----DSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFP-EAKRASVLRRCAEGVLSYIDATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFLE 1032
GGY S P L SG+ DS +AV KRL ++D TTKLKALA L + + PG++ +VP + P W F Y+RL + +R R AAN T+ ++ R P + SLMGPW+ SQ D PEVSS+ K++ +A FP + KR L C + Y++ ++ TP+ + + S +E + ++ S++ AL++ L+
Sbjct: 36 GGYIGSSRFDPSLAGSDSGTFPDVDSEVAVHLKRLGRKDATTKLKALASLSLLFKQK-------------PGKE-----------IVP------------------------ILPQWAFEYKRLLLDYNREVRRAANDTMANLVVTVGRDIAPHLKSLMGPWWFSQFDPVPEVSSAGKQSLQAAFPAQEKRLDALMYCTSEIFMYLEENLKLTPQSMSDRSAAL-DELEEMHQQAISSSLLALATLLD 234
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: UPI0003F08DD4 (E3 ubiquitin-protein ligase listerin-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08DD4) HSP 1 Score: 84.0 bits (206), Expect = 1.080e-13 Identity = 64/223 (28.70%), Postives = 97/223 (43.50%), Query Frame = 1
Query: 364 DSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSYI-DATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFL 1029
DS +V ++++K+DVTTKLKA+ E ++C+ +++ G P+W LY R + DRR REA + RR+ P + S+MGPW SQ DT +S+AK AF + FP +K++ + C E +L YI D +QT L + AEE + R+ S+ AL+ FL
Sbjct: 62 DSDFRMVMRKITKKDVTTKLKAIQEFTSLCK------------------------------------------------DKDEDSVKGTLPYWRRLYSRTCMDYDRRVREALQQAHEQLALKVRRSLAPHLKSIMGPWLLSQCDTYAPAASAAKSAFNSAFPLSKQSEAILFCKEDILMYIQDNLFKQTAATLSDPKSTPAEEMETKYNRVITSSFLALNYFL 236
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: A0A401RVC0_CHIPU (E3 ubiquitin-protein ligase listerin n=2 Tax=Chiloscyllium TaxID=34767 RepID=A0A401RVC0_CHIPU) HSP 1 Score: 83.6 bits (205), Expect = 1.460e-13 Identity = 63/237 (26.58%), Postives = 102/237 (43.04%), Query Frame = 1
Query: 364 DSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSYI-DATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFLEAVGPEANSAFSRR 1071
D+ +V +++SKRD TTKLKA+ E AMC+ EN+ G+ P+W +Y ++S + DRR REA ++ +R P + S+MG W +Q DT +S+AK AF+ FP K+ + C E +++ I D +++TPE L + EE ++ R+ S++ AL L+ + N R
Sbjct: 62 DADFRLVLRKMSKRDATTKLKAVQEFGAMCK------------------------------------------------EKHLENIKGVLPYWSRIYCKISLDHDRRVREAVQQAFEILVLQVKRNLAPYLKSIMGHWLIAQCDTYNPAASAAKVAFQVAFPLNKQPEAVAFCKEEIMNIICDYILKETPETLSDPQSLPEEEREEKYIRIVTSSLLALKKLLDLLPENENIVLKNR 250
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: A0A0S7JND1_9TELE (E3 ubiquitin-protein ligase listerin n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JND1_9TELE) HSP 1 Score: 80.1 bits (196), Expect = 2.360e-13 Identity = 60/223 (26.91%), Postives = 99/223 (44.39%), Query Frame = 1
Query: 364 DSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSYI-DATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFL 1029
D+ +V ++LSKRDV T+LKA+ + AMC+ AE + G+ P+W +Y ++S + DRR REA ++ RR+ P + SLMG W SQ DT +S+A +AF+A F AK+ L C + +L+ + D +++T + L ++ T EE + R+ S++ + L
Sbjct: 63 DADFRLVLRKLSKRDVVTRLKAVQDFGAMCQ------------------------------------------------ERDAEEVKGVLPYWPRIYCKISVDHDRRIREATQQAFEQLVLKVRRSLAPFLKSLMGHWILSQCDTYTPAASAACQAFQAAFSPAKQPEALSFCKDEILTVLQDVLLKETADTLSDSQSVTEEERETKYVRMLTSSLLGVKRLL 237
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: UPI0011C3B8BE (E3 ubiquitin-protein ligase listerin n=1 Tax=Calypte anna TaxID=9244 RepID=UPI0011C3B8BE) HSP 1 Score: 82.8 bits (203), Expect = 2.600e-13 Identity = 65/223 (29.15%), Postives = 102/223 (45.74%), Query Frame = 1
Query: 364 DSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSYI-DATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFL 1029
D+ +V ++LSKRDVTTKLKA+ E MC+ RE E VV G+ P+W +Y ++S + DRR REA + ++ ++ P + S+MG W SQ DT +S+A+EAFE FP +K+ L C + +L+ + D +++TP+ L + EE + R+ S++ AL L
Sbjct: 62 DADFRMVLRKLSKRDVTTKLKAMQEFGTMCK--ERETE-----------------------VVK-----------------------GVLPYWPRIYCKISLDHDRRVREATQQSFEQLILKVKKHLAPYLKSIMGYWLISQCDTYSPAASAAREAFEKAFPSSKQPEALAFCKDEILNVLQDHLLKETPDTLSDPQTVPEEEREAKYFRILTSSLLALKKLL 236
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Match: K7GH91_PELSI (E3 ubiquitin-protein ligase listerin n=2 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7GH91_PELSI) HSP 1 Score: 82.8 bits (203), Expect = 2.600e-13 Identity = 66/223 (29.60%), Postives = 102/223 (45.74%), Query Frame = 1
Query: 364 DSHLAVVSKRLSKRDVTTKLKALAELRAMCRLVTREAEPAASPQPGPGQDSRAGTSRVSSGVVPASGAGAVESSAMIAPATSAENLGGLAPHWVFLYQRLSAEGDRRTREAANTTLLCMLKANRRAFQPLMSSLMGPWFCSQADTAPEVSSSAKEAFEAVFPEAKRASVLRRCAEGVLSYI-DATVQQTPEMLEEASGCTAEEAVKRAERLCVSAIAALSSFL 1029
D+ +V ++LSKRDVTTKLKA+ E AMC+ RE+E AV+ G+ P+W +Y ++S + DRR REA ++ ++ P + S+MG W +Q DT +S+AK AFE FP +K+ L C E VL+ + D +++TP+ L + EE + R+ ++ AL L
Sbjct: 62 DADFRMVLRKLSKRDVTTKLKAMQEFAAMCK--ERESE-------------------------------AVK---------------GVLPYWPRIYCKISLDHDRRVREATQQAFEQLILKVKKHLAPYLKSIMGYWLVAQCDTYSPAASAAKVAFETAFPSSKQPEALAFCKEEVLNMLQDHLLKETPDTLSDPQTVPEEEREAKYFRILTCSLLALKKLL 236 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8561.19969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8561.19969.1 >prot_Ecto-sp13_S_contig8561.19969.1 ID=prot_Ecto-sp13_S_contig8561.19969.1|Name=mRNA_Ecto-sp13_S_contig8561.19969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=386bp ECVAGLLCVLLIAMKEKKKEGAGGRPRGSRKNIVGSESQGLLQAAAGTGFback to top mRNA from alignment at Ecto-sp13_S_contig8561:2282..6707+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8561.19969.1 ID=mRNA_Ecto-sp13_S_contig8561.19969.1|Name=mRNA_Ecto-sp13_S_contig8561.19969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8561:2282..6707+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8561:2282..6707+ >mRNA_Ecto-sp13_S_contig8561.19969.1 ID=mRNA_Ecto-sp13_S_contig8561.19969.1|Name=mRNA_Ecto-sp13_S_contig8561.19969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8561:2282..6707+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |