mRNA_Ecto-sp13_S_contig85449.19947.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85449.19947.1
Unique NamemRNA_Ecto-sp13_S_contig85449.19947.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig85449.19947.1 vs. uniprot
Match: D8LJX2_ECTSI (Farnesyltransferase, CAAX box, alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJX2_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 5.540e-14
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 MDVDDLQVPLRGFEDVTPIPQDDGPDPVVSIAYRHN 108
            MDVDDLQVPLRGFEDVTPIPQDD  DPVVSIAYRHN
Sbjct:    1 MDVDDLQVPLRGFEDVTPIPQDDSADPVVSIAYRHN 36
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85449.19947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJX2_ECTSI5.540e-1494.44Farnesyltransferase, CAAX box, alpha n=2 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85449contigEcto-sp13_S_contig85449:10..117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score73.2
Seed ortholog evalue2.8e-11
Seed eggNOG ortholog2880.D8LJX2
Preferred nameRAM2
Model size108
KEGG rclassRC00069,RC03004
KEGG koko:K05955
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,map00900,map01130
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0004660,GO:0004661,GO:0004662,GO:0004663,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005953,GO:0005965,GO:0006464,GO:0006807,GO:0006950,GO:0007323,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0008360,GO:0009414,GO:0009415,GO:0009628,GO:0009787,GO:0009788,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010467,GO:0010646,GO:0010648,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0018344,GO:0019538,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048509,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051604,GO:0051641,GO:0065007,GO:0065008,GO:0070727,GO:0071704,GO:0072657,GO:0072659,GO:0097354,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990234,GO:1990778
Exons1
EggNOG free text desc.CAAX-protein geranylgeranyltransferase activity
EggNOG OGsCOG5536@1,KOG0530@2759
EC2.5.1.58,2.5.1.59
Cds size108
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01006
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464124.7426288-CDS-Ecto-sp13_S_contig85449:9..1171681464124.7426288-CDS-Ecto-sp13_S_contig85449:9..117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85449 10..117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85449.19947.1prot_Ecto-sp13_S_contig85449.19947.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85449 10..117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85449.19947.1

>prot_Ecto-sp13_S_contig85449.19947.1 ID=prot_Ecto-sp13_S_contig85449.19947.1|Name=mRNA_Ecto-sp13_S_contig85449.19947.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
MDVDDLQVPLRGFEDVTPIPQDDGPDPVVSIAYRHN
back to top

mRNA from alignment at Ecto-sp13_S_contig85449:10..117+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85449.19947.1 ID=mRNA_Ecto-sp13_S_contig85449.19947.1|Name=mRNA_Ecto-sp13_S_contig85449.19947.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85449:10..117+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGTCGACGACCTCCAGGTGCCGCTGCGAGGGTTTGAAGACGTGAC
GCCCATCCCTCAGGACGATGGTCCTGATCCTGTCGTGTCTATTGCCTACA
GGCACAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85449:10..117+

>mRNA_Ecto-sp13_S_contig85449.19947.1 ID=mRNA_Ecto-sp13_S_contig85449.19947.1|Name=mRNA_Ecto-sp13_S_contig85449.19947.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85449:10..117+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGTCGACGACCTCCAGGTGCCGCTGCGAGGGTTTGAAGACGTGAC
GCCCATCCCTCAGGACGATGGTCCTGATCCTGTCGTGTCTATTGCCTACA
GGCACAAC
back to top