mRNA_Ecto-sp13_S_contig8537.19939.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8537.19939.1
Unique NamemRNA_Ecto-sp13_S_contig8537.19939.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8537.19939.1 vs. uniprot
Match: A0A6H5JGW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW6_9PHAE)

HSP 1 Score: 504 bits (1297), Expect = 1.920e-164
Identity = 280/319 (87.77%), Postives = 292/319 (91.54%), Query Frame = 3 
Query:  141 GRHLRLAWVDSPPDPSQGWRGCCGGPARVRVDTALRPQDPAVMIIPGPRAAARDPVVHLRACAVPPHFVQPWATVEVVRKDGGXXXXXXXXXXXXXDGEPVTEGTEVGDARSALRPESALELLRGCVVRSGGVVHLLYAPADAACRGVRLLCRRAPEYVIPLSADSPSGTTPATGASASRRAGGSHRSRNEKTSHGRRRGTRRRSREGEDAEEKQKMGACGEGETERLGSKQAIGGTDVACSRREDLATGAIADAVGSSVSGTPGGKTSVEKEGDWAGRLSDWGAVTISSDIVVPHKALEVSYHDVSDAARTKTTCREG 1097
            GRHLRLAWVDSPPDPSQGWRGC GGPARVRVDTALRPQDPAVMIIPGPRAAARDPVVHLRACAVPPHFVQPW TVE+VR DGGXXXXXXXXXXX    EPV EGTEVGDARSALRPESALELLRGCVVRSGGVVH L+APADAACRGVRLLCRRAPEYV+PLS DSP GTTP TGASASRR GGSH S NEK+SHGRRRGTRRRSREGEDA EKQK+GACGEGETERLG+KQA G T VAC+RR D ATGAIADAVG S SGTPGGKT V+KEGDWAGRLSDWGAVTISS++VVPHKALEVSYHD+S AA +KTTC EG
Sbjct:  255 GRHLRLAWVDSPPDPSQGWRGC-GGPARVRVDTALRPQDPAVMIIPGPRAAARDPVVHLRACAVPPHFVQPWTTVEIVR-DGGXXXXXXXXXXX----EPVAEGTEVGDARSALRPESALELLRGCVVRSGGVVHFLHAPADAACRGVRLLCRRAPEYVVPLSTDSPPGTTPVTGASASRRTGGSHGSGNEKSSHGRRRGTRRRSREGEDAAEKQKVGACGEGETERLGTKQATG-TYVACTRRGDSATGAIADAVGWSESGTPGGKTGVDKEGDWAGRLSDWGAVTISSEVVVPHKALEVSYHDISAAAPSKTTCGEG 566
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8537.19939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGW6_9PHAE1.920e-16487.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8537contigEcto-sp13_S_contig8537:288..1914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1097
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-01_009400.1
Cds size1092
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464124.0197854-CDS-Ecto-sp13_S_contig8537:287..12461681464124.0197854-CDS-Ecto-sp13_S_contig8537:287..1246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8537 288..1246 -
1681464124.0298011-CDS-Ecto-sp13_S_contig8537:1776..19091681464124.0298011-CDS-Ecto-sp13_S_contig8537:1776..1909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8537 1777..1909 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464124.0381858-UTR-Ecto-sp13_S_contig8537:1909..19141681464124.0381858-UTR-Ecto-sp13_S_contig8537:1909..1914Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8537 1910..1914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8537.19939.1prot_Ecto-sp13_S_contig8537.19939.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8537 288..1909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8537.19939.1

>prot_Ecto-sp13_S_contig8537.19939.1 ID=prot_Ecto-sp13_S_contig8537.19939.1|Name=mRNA_Ecto-sp13_S_contig8537.19939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=364bp
MACGAGTEWMPGSSRSLQAVASVDPRPDTVEDVLNVCPQQAASFGGRHLR
LAWVDSPPDPSQGWRGCCGGPARVRVDTALRPQDPAVMIIPGPRAAARDP
VVHLRACAVPPHFVQPWATVEVVRKDGGGGGGGGGSGAGGGDGEPVTEGT
EVGDARSALRPESALELLRGCVVRSGGVVHLLYAPADAACRGVRLLCRRA
PEYVIPLSADSPSGTTPATGASASRRAGGSHRSRNEKTSHGRRRGTRRRS
REGEDAEEKQKMGACGEGETERLGSKQAIGGTDVACSRREDLATGAIADA
VGSSVSGTPGGKTSVEKEGDWAGRLSDWGAVTISSDIVVPHKALEVSYHD
VSDAARTKTTCREG
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mRNA from alignment at Ecto-sp13_S_contig8537:288..1914-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8537.19939.1 ID=mRNA_Ecto-sp13_S_contig8537.19939.1|Name=mRNA_Ecto-sp13_S_contig8537.19939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8537:288..1914- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGAGATGGCCTGCGGCGCGGGGACGGAGTGGATGCCGGGATCTTCTCGT
TCTCTGCAAGCGGTTGCTTCCGTGGACCCTCGCCCGGATACTGTGGAGGA
TGTTCTGAACGTCTGTCCTCAGCAGGCTGCGAGCTTCGGTAAGCTTTGTG
AACGCTTGGTTGCGGGAAATCAATCATTTTCGGTGATGAAGCGACAGGCC
GGGACGTCATCAGCCCGCCGACGAATGAGTCTCTCTTCATTGCTGTTGTA
TCCCACCTTTAGTGTGGGAGGTTCGTTCAACCGAAGATGAACGGTGCCTC
AAGTAAAGCATGTGGAGGCGTTTTAGAATGACTGCGCTGGAACAAATTTA
GACTGAACGTCCACCTACGTAGTCTATACGTGTAGCAGCAGCACGCCACG
GCACGATGTCGGCTGTTGATGTACGGTGCTGTGTCTTGCACCACAGTAGA
GTCAGGCAGAGGGTTGCGAGAGGTAGGACCGCATCGATCGCGTCCATGGT
TGCTGTGTGTCCCTCGAGACGGTCCCTCTTTGCAGCAACTTGCTGCTGCC
GGACAGGACTACTGCTGTACACCTCGGGTTTTTTGCAACGGTACATATAT
CGGCTCTTGCCGCGCGTTAATCTCGAGACTGCTGTACCATCGCTCTTCCC
ACCTGCATCCTAAACCAGGCGGACGTCACCTGAGACTAGCGTGGGTAGAC
TCCCCCCCAGACCCGTCCCAAGGGTGGAGAGGCTGCTGCGGCGGTCCGGC
GCGCGTTCGCGTGGACACCGCGCTTCGCCCGCAAGACCCCGCCGTGATGA
TCATACCAGGGCCCCGGGCGGCCGCAAGGGACCCGGTCGTCCACCTCCGA
GCCTGCGCTGTGCCACCTCACTTTGTCCAGCCGTGGGCTACCGTCGAGGT
TGTGCGGAAAGACGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGCTG
GTGGTGGTGATGGTGAACCGGTGACGGAGGGCACCGAGGTTGGAGACGCG
AGATCGGCGTTGCGTCCGGAGTCCGCCCTCGAGCTCCTGCGGGGCTGCGT
CGTCAGGTCCGGCGGCGTCGTCCACCTCCTTTACGCCCCGGCAGATGCCG
CCTGCCGCGGCGTTCGGCTCCTCTGTCGACGGGCGCCGGAGTACGTTATC
CCTCTCTCTGCAGATTCTCCTTCTGGGACTACTCCCGCCACCGGCGCTTC
CGCAAGCCGTCGCGCGGGGGGCTCCCATAGGAGCAGAAATGAGAAGACAA
GCCACGGCCGACGCAGAGGAACAAGGCGGCGTAGCAGAGAAGGGGAAGAT
GCTGAGGAAAAGCAGAAAATGGGGGCCTGCGGCGAAGGCGAGACGGAAAG
GTTAGGGTCGAAGCAGGCAATAGGAGGGACGGACGTCGCATGTTCGCGGC
GAGAGGATTTAGCGACTGGAGCCATCGCTGACGCCGTTGGGTCGAGCGTG
AGCGGTACACCGGGAGGGAAGACTAGTGTGGAGAAGGAGGGGGACTGGGC
CGGCCGGCTGTCCGATTGGGGGGCGGTGACGATCAGCAGCGATATTGTTG
TGCCCCACAAGGCGCTCGAAGTGTCTTACCACGACGTTTCCGACGCCGCC
CGTACAAAAACCACCTGTCGAGAAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8537:288..1914-

>mRNA_Ecto-sp13_S_contig8537.19939.1 ID=mRNA_Ecto-sp13_S_contig8537.19939.1|Name=mRNA_Ecto-sp13_S_contig8537.19939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1092bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8537:288..1914- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTGCGGCGCGGGGACGGAGTGGATGCCGGGATCTTCTCGTTCTCT
GCAAGCGGTTGCTTCCGTGGACCCTCGCCCGGATACTGTGGAGGATGTTC
TGAACGTCTGTCCTCAGCAGGCTGCGAGCTTCGGCGGACGTCACCTGAGA
CTAGCGTGGGTAGACTCCCCCCCAGACCCGTCCCAAGGGTGGAGAGGCTG
CTGCGGCGGTCCGGCGCGCGTTCGCGTGGACACCGCGCTTCGCCCGCAAG
ACCCCGCCGTGATGATCATACCAGGGCCCCGGGCGGCCGCAAGGGACCCG
GTCGTCCACCTCCGAGCCTGCGCTGTGCCACCTCACTTTGTCCAGCCGTG
GGCTACCGTCGAGGTTGTGCGGAAAGACGGCGGCGGCGGCGGCGGCGGCG
GCGGCAGCGGCGCTGGTGGTGGTGATGGTGAACCGGTGACGGAGGGCACC
GAGGTTGGAGACGCGAGATCGGCGTTGCGTCCGGAGTCCGCCCTCGAGCT
CCTGCGGGGCTGCGTCGTCAGGTCCGGCGGCGTCGTCCACCTCCTTTACG
CCCCGGCAGATGCCGCCTGCCGCGGCGTTCGGCTCCTCTGTCGACGGGCG
CCGGAGTACGTTATCCCTCTCTCTGCAGATTCTCCTTCTGGGACTACTCC
CGCCACCGGCGCTTCCGCAAGCCGTCGCGCGGGGGGCTCCCATAGGAGCA
GAAATGAGAAGACAAGCCACGGCCGACGCAGAGGAACAAGGCGGCGTAGC
AGAGAAGGGGAAGATGCTGAGGAAAAGCAGAAAATGGGGGCCTGCGGCGA
AGGCGAGACGGAAAGGTTAGGGTCGAAGCAGGCAATAGGAGGGACGGACG
TCGCATGTTCGCGGCGAGAGGATTTAGCGACTGGAGCCATCGCTGACGCC
GTTGGGTCGAGCGTGAGCGGTACACCGGGAGGGAAGACTAGTGTGGAGAA
GGAGGGGGACTGGGCCGGCCGGCTGTCCGATTGGGGGGCGGTGACGATCA
GCAGCGATATTGTTGTGCCCCACAAGGCGCTCGAAGTGTCTTACCACGAC
GTTTCCGACGCCGCCCGTACAAAAACCACCTGTCGAGAAGGT
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