mRNA_Ecto-sp13_S_contig8393.19765.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8393.19765.1
Unique NamemRNA_Ecto-sp13_S_contig8393.19765.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8393.19765.1 vs. uniprot
Match: D8LN11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN11_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.780e-11
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 3 
Query:  645 MFDMLDSERQGRVLESDLFKHLLPLLEKTGLCSPLRKEST 764
            MFDMLDSERQGRVLESDLFKH LPLLEKTGL  P RKEST
Sbjct:    1 MFDMLDSERQGRVLESDLFKHFLPLLEKTGLSGPPRKEST 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8393.19765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN11_ECTSI2.780e-1190.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8393contigEcto-sp13_S_contig8393:3..1560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score74.7
Seed ortholog evalue6.3e-11
Seed eggNOG ortholog2880.D8LN11
Model size765
KEGG koko:K04409,ko:K13412,ko:K19833
KEGG Pathwayko04010,ko04011,ko04012,ko04014,ko04024,ko04062,ko04360,ko04392,ko04510,ko04626,ko04650,ko04660,ko04666,ko04810,ko05120,ko05145,ko05205,ko05211,map04010,map04011,map04012,map04014,map04024,map04062,map04360,map04392,map04510,map04626,map04650,map04660,map04666,map04810,map05120,map05145,map05205,map05211
Hectar predicted targeting categoryother localisation
GOsGO:0000188,GO:0001932,GO:0001933,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0006464,GO:0006469,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010468,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030587,GO:0031152,GO:0031323,GO:0031324,GO:0031347,GO:0031399,GO:0031400,GO:0031667,GO:0031668,GO:0031669,GO:0032101,GO:0032268,GO:0032269,GO:0032502,GO:0033549,GO:0033554,GO:0033673,GO:0036211,GO:0042325,GO:0042326,GO:0042578,GO:0042594,GO:0043086,GO:0043170,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0043900,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044764,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051703,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070372,GO:0070373,GO:0071496,GO:0071704,GO:0071900,GO:0071901,GO:0080090,GO:0080134,GO:0090702,GO:0098630,GO:0098743,GO:0099120,GO:0140096,GO:1900424,GO:1901564,GO:1902531,GO:1902532
Exons3
EggNOG free text desc.Rac GTPase binding
EggNOG OGsKOG0578@1,KOG0578@2759
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-27_000960.1
EC2.7.11.1
Cds size699
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464109.3556473-CDS-Ecto-sp13_S_contig8393:2..1531681464109.3556473-CDS-Ecto-sp13_S_contig8393:2..153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8393 3..153 -
1681464109.3671634-CDS-Ecto-sp13_S_contig8393:485..6591681464109.3671634-CDS-Ecto-sp13_S_contig8393:485..659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8393 486..659 -
1681464109.379331-CDS-Ecto-sp13_S_contig8393:1121..14951681464109.379331-CDS-Ecto-sp13_S_contig8393:1121..1495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8393 1122..1495 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464109.3920646-UTR-Ecto-sp13_S_contig8393:1495..15601681464109.3920646-UTR-Ecto-sp13_S_contig8393:1495..1560Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8393 1496..1560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8393.19765.1prot_Ecto-sp13_S_contig8393.19765.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8393 3..1495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8393.19765.1

>prot_Ecto-sp13_S_contig8393.19765.1 ID=prot_Ecto-sp13_S_contig8393.19765.1|Name=mRNA_Ecto-sp13_S_contig8393.19765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
MGAAGSVGTSSTAPCKSTHSSGKYAAVDGEVQRAEQFETTAKVLVSKYHD
LRLSSSGGGEGATDCASLLDNGVVSLAPMPSRSSSPPPPKVRSTRLSVQR
RLDSVAEPKIDDEVCVTTAPPTAGRQNGGQGTSANTRTGLSPGIGNVANA
NNGNGVGRGARAGSSLDHFVHRDDMIGLARDLGYDVTPEQASAMFDMLDS
ERQGRVLESDLFKHLLPLLEKTGLCSPLRKEST
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mRNA from alignment at Ecto-sp13_S_contig8393:3..1560-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8393.19765.1 ID=mRNA_Ecto-sp13_S_contig8393.19765.1|Name=mRNA_Ecto-sp13_S_contig8393.19765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8393:3..1560- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCCGACAAGTACTCTACCGTAGGCCACGGCTGTGGTTGTGTGGCATGA
GCGAAAGCCTTCCTCATGGGTGCAGCAGGGTCAGTGGGCACCAGCTCCAC
AGCCCCTTGCAAGAGCACCCATAGCTCCGGCAAATATGCAGCAGTCGACG
GCGAGGTTCAGCGGGCGGAGCAATTCGAAACTACCGCGAAGGTGTTGGTG
TCAAAGTATCATGACCTTCGCCTTAGCAGCAGTGGTGGAGGCGAAGGCGC
TACTGATTGTGCATCTTTGTTGGACAACGGGGTGGTATCGTTGGCGCCCA
TGCCATCCCGGTCGTCGTCTCCCCCCCCCCCGAAAGTACGCAGTACGAGG
CTGTCCGTCCAAAGGCGGCTAGATAGTGTGGCTGAGCCGAAGATTGATGA
TGAGGTGTGCGTCACGACAGCACCCCCCACCGCTGGACGGTGAGAGGCTG
TTCTGAAACCGGGCATACTTGTGGAATAAGCATTGGTTCAGAGGTGAAGT
CCCGCCCCGAGGGTATTTCGGGAATTTCCCAGTGCTCTCGATAGGCCCAT
ATGCTGTAGCATGTTTTATGTAGGGAATGAGGTGTCGTTTGGTTTGCTCA
AGTTCCTCACATGTACACGAAAAGCTTCGTTCAGGTGTCCTTTTAAATCT
AGTCTACGTGCGGTCAAGCAAGGAGATACGCCAAGCTCGCAGAAAGATCT
ATGGTATCATTGCAGTAGTATTTTGCGGCGGGCCGTTCAGCAAGAGCAAA
ACGCGAACACGGCGCGGTATGTACGACTGCTGCTGTCGAATTCACGACTC
CTCGCAGCCAAATTCATGCCGTTTGTACTACTAGTCTACATCCCAAACGC
CAGCGGCTGTTGAATGCCATGAAATTCGATAACGGTTTGCCTCGCGCGCA
GTCAGAATGGAGGTCAGGGTACTAGTGCGAATACCCGCACGGGGCTGTCT
CCGGGGATCGGCAATGTGGCCAACGCCAACAACGGGAATGGGGTAGGGCG
TGGAGCTCGAGCGGGGTCATCTTTAGATCACTTCGTTCATCGCGATGACA
TGATCGGGTTAGCTCGAGACCTTGGGTAAGCATAAAGCTTGACGCGGGTG
TCACTCGGCCAGCGAGACCCGGACAAATCATGGAATATTTTCTCATCAAT
GTAGTGAAAGTGTTCGGCGGTAATGCTTAAATCGTGCAGCCGGCCCCCTC
CATCCATTGTGAACGGCTGTGGCCGAGCGCTCGTCGTTGCCACGAGCACA
GCCGAGGCTTCACCTACAACTTTACGCCGGGTCTTGCGCTAGACCATATC
AGTTGCCCGCTCGTTCCAAGAAACGCGCTCGCTTTTCCTCTGCCTTGGGT
AATTTCCCGCCATCATATTCACCAAAACACTGCTTTTCACGATGGTGTCA
AATCAAGGTATGATGTCACCCCGGAACAGGCGTCGGCAATGTTCGATATG
CTAGACTCTGAACGCCAGGGCAGGGTTTTAGAAAGCGATCTCTTTAAACA
CTTGCTTCCCCTCCTGGAGAAGACGGGCCTTTGTAGCCCACTGAGGAAAG
AGTCAACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8393:3..1560-

>mRNA_Ecto-sp13_S_contig8393.19765.1 ID=mRNA_Ecto-sp13_S_contig8393.19765.1|Name=mRNA_Ecto-sp13_S_contig8393.19765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8393:3..1560- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGCAGCAGGGTCAGTGGGCACCAGCTCCACAGCCCCTTGCAAGAG
CACCCATAGCTCCGGCAAATATGCAGCAGTCGACGGCGAGGTTCAGCGGG
CGGAGCAATTCGAAACTACCGCGAAGGTGTTGGTGTCAAAGTATCATGAC
CTTCGCCTTAGCAGCAGTGGTGGAGGCGAAGGCGCTACTGATTGTGCATC
TTTGTTGGACAACGGGGTGGTATCGTTGGCGCCCATGCCATCCCGGTCGT
CGTCTCCCCCCCCCCCGAAAGTACGCAGTACGAGGCTGTCCGTCCAAAGG
CGGCTAGATAGTGTGGCTGAGCCGAAGATTGATGATGAGGTGTGCGTCAC
GACAGCACCCCCCACCGCTGGACGTCAGAATGGAGGTCAGGGTACTAGTG
CGAATACCCGCACGGGGCTGTCTCCGGGGATCGGCAATGTGGCCAACGCC
AACAACGGGAATGGGGTAGGGCGTGGAGCTCGAGCGGGGTCATCTTTAGA
TCACTTCGTTCATCGCGATGACATGATCGGGTTAGCTCGAGACCTTGGGT
ATGATGTCACCCCGGAACAGGCGTCGGCAATGTTCGATATGCTAGACTCT
GAACGCCAGGGCAGGGTTTTAGAAAGCGATCTCTTTAAACACTTGCTTCC
CCTCCTGGAGAAGACGGGCCTTTGTAGCCCACTGAGGAAAGAGTCAACG
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