mRNA_Ecto-sp13_S_contig817.19518.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig817.19518.1
Unique NamemRNA_Ecto-sp13_S_contig817.19518.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig817.19518.1 vs. uniprot
Match: A0A6H5JKB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKB5_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 2.380e-88
Identity = 149/160 (93.12%), Postives = 150/160 (93.75%), Query Frame = 1 
Query:    1 GMGEVAAAAQAARRDRRIDTIVLAKCRRKSQTMWPARLCSKREILERMENPDPADEGVDPRHMCLVVFLCEGGHHVTDWVAPGSMRPYLRHAAAYPYKKKAYAGTARLQPDFTAAEAWGEEMKALVTARRVEARTLRRQRAKEEEKVGATTFKPALAIEA 480
            GMGEVAAAAQAARRDRRIDTIVLAKCRRKSQTMWPARLCSKRE+LERMENPDPADEGVDPRHMCLVVFLCEGGHHVTDWVAPGSMRPYLRHAAAYPYKKKAYAGTARLQPDFTAAEAWGEEMKALVTARR EARTLRRQRAKE         KPALAIEA
Sbjct:  578 GMGEVAAAAQAARRDRRIDTIVLAKCRRKSQTMWPARLCSKREMLERMENPDPADEGVDPRHMCLVVFLCEGGHHVTDWVAPGSMRPYLRHAAAYPYKKKAYAGTARLQPDFTAAEAWGEEMKALVTARRAEARTLRRQRAKEXXXXXXXXXKPALAIEA 737
[Close]
BLAST of mRNA_Ecto-sp13_S_contig817.19518.1 vs. uniprot
Match: D7G062_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G062_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 5.800e-43
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:  130 ILERMENPDPADEGVDPRHMCLVVFLCEGGHHVTDWVAPGSMRPYLRHAAAYPYKKKAYAGTARLQ 327
            +LERMENPDPADEGVDPRHMCLVVFLCEGGHHVTDWVAPGSMRPYLRHAAAYPYKKKAYAGTARLQ
Sbjct:    1 MLERMENPDPADEGVDPRHMCLVVFLCEGGHHVTDWVAPGSMRPYLRHAAAYPYKKKAYAGTARLQ 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig817.19518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKB5_9PHAE2.380e-8893.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G062_ECTSI5.800e-4398.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig817contigEcto-sp13_S_contig817:19530..21047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size481
Hectar predicted targeting categoryother localisation
Exons3
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464089.1163776-CDS-Ecto-sp13_S_contig817:19529..196821681464089.1163776-CDS-Ecto-sp13_S_contig817:19529..19682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig817 19530..19682 -
1681464089.1271656-CDS-Ecto-sp13_S_contig817:20472..206701681464089.1271656-CDS-Ecto-sp13_S_contig817:20472..20670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig817 20473..20670 -
1681464089.1361544-CDS-Ecto-sp13_S_contig817:20918..210441681464089.1361544-CDS-Ecto-sp13_S_contig817:20918..21044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig817 20919..21044 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464089.145639-UTR-Ecto-sp13_S_contig817:21044..210471681464089.145639-UTR-Ecto-sp13_S_contig817:21044..21047Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig817 21045..21047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig817.19518.1prot_Ecto-sp13_S_contig817.19518.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig817 19530..21044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig817.19518.1

>prot_Ecto-sp13_S_contig817.19518.1 ID=prot_Ecto-sp13_S_contig817.19518.1|Name=mRNA_Ecto-sp13_S_contig817.19518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MGEVAAAAQAARRDRRIDTIVLAKCRRKSQTMWPARLCSKREILERMENP
DPADEGVDPRHMCLVVFLCEGGHHVTDWVAPGSMRPYLRHAAAYPYKKKA
YAGTARLQPDFTAAEAWGEEMKALVTARRVEARTLRRQRAKEEEKVGATT
FKPALAIEA
back to top

mRNA from alignment at Ecto-sp13_S_contig817:19530..21047-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig817.19518.1 ID=mRNA_Ecto-sp13_S_contig817.19518.1|Name=mRNA_Ecto-sp13_S_contig817.19518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1518bp|location=Sequence derived from alignment at Ecto-sp13_S_contig817:19530..21047- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCATGGGCGAGGTGGCGGCGGCGGCGCAAGCGGCGAGGAGGGACAGGAG
GATCGACACGATCGTGCTGGCCAAGTGCCGCCGAAAGAGCCAAACAATGT
GGCCGGCAAGACTGTGTTCGAAACGCGAGGTGTGAAGGAAGAGGTTTTTT
GGCGGGGGGGAGGGGGAGCAAGGATCGATTGGAGTTAAGAGATACGTGGG
CATTGACGTTTGTGTAATGGTTCGCAGAACGTGATTTACCGCTGATGTGT
TTGGTCACAACAAAGAATTTCGGCAGGGACCTGACTGTACAACCGGGAGC
ACTTATTGTAGTACTGTTTCATGCGCTGTTTCGTCTCATGGAACGCGTGT
GGACCCCCCCCCCTCCCCCACCCGCAGATACTGGAGCGCATGGAAAACCC
CGACCCTGCTGACGAAGGGGTGGACCCGCGGCACATGTGCCTGGTGGTGT
TTCTGTGCGAGGGGGGGCACCACGTTACCGACTGGGTGGCCCCCGGGAGC
ATGCGCCCTTACCTGCGGCACGCTGCGGCCTACCCGTACAAGAAGAAGGC
GTACGCAGGGACCGCTCGCCTGCAGGTGAGCTACGGTATCTCTTGGGAGA
GAGGAGAGGGGTGAAATTCTTTCCGAGGATGCCTAGGTAGTCGTTAGACC
TTTGACCTCGAAGTCAGGGAGGTGCCCGGAGGGGGGTTTTCGTGTGTATG
TCGTGGGTGTTGCTGTTGCTGTTGCTGTACATTACAGGCGTGAGAGCTCG
TGGAAGGTACGCACACACGCGCACCTTTTAGGGATCTTGAGTTTTCCCGC
TAGCACTGGGTCAGCCAGTTGGCGCGGTCGATGATTATATGAAGACACGC
AGAGAGAGACGGGGGAGGGGGGGGGCTCTTGTGTTAGTGTCGCGTCTGTT
GCTGTGTGTTTGCGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTCG
ATAACCCTCCCTCCCCCGCTGTTGAAAAGGCTGGAAGTGTTATAATAGGA
TAAATAGGATGGGGAAATCGTTTTTTGGCATGTAGGAAGGAACGATTGGC
CATCGGTGTTCGGTCCTATGAGAACGATGCTCCGTCATCTCGAGGACACT
TGGGTGGTCAATGGCCCACTAACAGCTATGGCTGCAAAGCATGAGTATTC
CCCCCCCCCCTCTCGATACTCACCGATACCTCGCGGGGCTTCGCGCTTGG
TGATGCAAGAGCCTGGTCCGGTGAGAGCCCGAAGTGCCCCGTCCCGGCTT
TTGTAGGGATGAGAGGTCAAGGTTCTAACGACTACGGCATGCACGATGAT
GAGGACACCCCACCCTCTCGATCCTTGGCGCTGGTTCGGTCGTTCTTTCC
CCGTGCGCCGTACAGCCCGACTTCACCGCGGCGGAGGCCTGGGGCGAGGA
GATGAAGGCCCTCGTGACCGCACGAAGGGTAGAGGCTAGGACCCTTCGTC
GCCAGCGCGCGAAAGAGGAAGAGAAGGTAGGGGCGACGACGTTCAAGCCG
GCACTTGCGATCGAGGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig817:19530..21047-

>mRNA_Ecto-sp13_S_contig817.19518.1 ID=mRNA_Ecto-sp13_S_contig817.19518.1|Name=mRNA_Ecto-sp13_S_contig817.19518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig817:19530..21047- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGAGGTGGCGGCGGCGGCGCAAGCGGCGAGGAGGGACAGGAGGAT
CGACACGATCGTGCTGGCCAAGTGCCGCCGAAAGAGCCAAACAATGTGGC
CGGCAAGACTGTGTTCGAAACGCGAGATACTGGAGCGCATGGAAAACCCC
GACCCTGCTGACGAAGGGGTGGACCCGCGGCACATGTGCCTGGTGGTGTT
TCTGTGCGAGGGGGGGCACCACGTTACCGACTGGGTGGCCCCCGGGAGCA
TGCGCCCTTACCTGCGGCACGCTGCGGCCTACCCGTACAAGAAGAAGGCG
TACGCAGGGACCGCTCGCCTGCAGCCCGACTTCACCGCGGCGGAGGCCTG
GGGCGAGGAGATGAAGGCCCTCGTGACCGCACGAAGGGTAGAGGCTAGGA
CCCTTCGTCGCCAGCGCGCGAAAGAGGAAGAGAAGGTAGGGGCGACGACG
TTCAAGCCGGCACTTGCGATCGAGGCG
back to top