mRNA_Ecto-sp13_S_contig816.19504.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig816.19504.1
Unique NamemRNA_Ecto-sp13_S_contig816.19504.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig816.19504.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.990e-18
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:  256 SPEQFPADRELQYRCPRTGSNTNLFLKKNIREDRADYPACRNF 384
            SPEQ PADRELQY CPRTG NTNLFLK+NIR+DRADYPACRNF
Sbjct:   52 SPEQVPADRELQYLCPRTGCNTNLFLKENIRKDRADYPACRNF 94
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BLAST of mRNA_Ecto-sp13_S_contig816.19504.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.770e-13
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 2 
Query:   92 YIHASPKPPSLQPRYRRIVLHRWILSAGCFYCCFYPARRPRTE 220
            YIHASPKPPSLQ RY+RIVLHR ILSAGCF  CFYPA R R+ 
Sbjct:   38 YIHASPKPPSLQRRYQRIVLHRRILSAGCFSGCFYPAARERSR 80
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BLAST of mRNA_Ecto-sp13_S_contig816.19504.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 9.390e-12
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  253 GSPEQFPADRELQYRCPRTGSNTNLFLKKNIREDRADY--PACRNFRPAPAR 402
            GSPEQ PADRELQ+ CP TG NTNLFLK+NI +DRADY         P PAR
Sbjct:   53 GSPEQVPADRELQHLCPGTGCNTNLFLKENIHKDRADYCTTPAGTLAPVPAR 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig816.19504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KCU2_9PHAE7.990e-1888.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKW7_ECTSI3.770e-1379.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LET1_ECTSI9.390e-1265.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig816contigEcto-sp13_S_contig816:2823..3239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size418
Hectar predicted targeting categoryother localisation
Exons1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464087.81368-CDS-Ecto-sp13_S_contig816:2822..32391681464087.81368-CDS-Ecto-sp13_S_contig816:2822..3239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig816 2823..3239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig816.19504.1prot_Ecto-sp13_S_contig816.19504.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig816 2823..3239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig816.19504.1

>prot_Ecto-sp13_S_contig816.19504.1 ID=prot_Ecto-sp13_S_contig816.19504.1|Name=mRNA_Ecto-sp13_S_contig816.19504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
WLSSHLLLLHLHSHHKSRLTPPEHISPNKHVHPCLAKAAKPPAPIPTHRP
PPLDPLRRLLLLLLLPRPPPAHGAGSSASAGSSTGSPEQFPADRELQYRC
PRTGSNTNLFLKKNIREDRADYPACRNFRPAPARGPAF*
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mRNA from alignment at Ecto-sp13_S_contig816:2823..3239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig816.19504.1 ID=mRNA_Ecto-sp13_S_contig816.19504.1|Name=mRNA_Ecto-sp13_S_contig816.19504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig816:2823..3239+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCTCTCCTCCCATCTACTCCTTCTACACCTCCACTCTCATCACAAATC
ACGGCTCACGCCGCCAGAGCATATTTCACCCAATAAACACGTACATCCAT
GCCTCGCCAAAGCCGCCAAGCCTCCAGCCCCGATACCGACGCATCGTCCT
CCACCGCTGGATCCTCTCCGCCGGCTGCTTCTACTGCTGCTTCTACCCCG
CCCGCCGCCCGCGCACGGAGCCGGCTCATCTGCGAGTGCTGGCTCATCCA
CCGGCTCGCCCGAGCAATTCCCGGCCGACCGTGAGCTGCAATACCGCTGC
CCACGCACCGGTTCCAACACGAACCTCTTCTTGAAGAAAAATATCCGCGA
AGACAGGGCCGACTACCCCGCCTGCAGGAACTTTAGGCCGGCACCTGCGC
GTGGACCGGCCTTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig816:2823..3239+

>mRNA_Ecto-sp13_S_contig816.19504.1 ID=mRNA_Ecto-sp13_S_contig816.19504.1|Name=mRNA_Ecto-sp13_S_contig816.19504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig816:2823..3239+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCTCTCCTCCCATCTACTCCTTCTACACCTCCACTCTCATCACAAATC
ACGGCTCACGCCGCCAGAGCATATTTCACCCAATAAACACGTACATCCAT
GCCTCGCCAAAGCCGCCAAGCCTCCAGCCCCGATACCGACGCATCGTCCT
CCACCGCTGGATCCTCTCCGCCGGCTGCTTCTACTGCTGCTTCTACCCCG
CCCGCCGCCCGCGCACGGAGCCGGCTCATCTGCGAGTGCTGGCTCATCCA
CCGGCTCGCCCGAGCAATTCCCGGCCGACCGTGAGCTGCAATACCGCTGC
CCACGCACCGGTTCCAACACGAACCTCTTCTTGAAGAAAAATATCCGCGA
AGACAGGGCCGACTACCCCGCCTGCAGGAACTTTAGGCCGGCACCTGCGC
GTGGACCGGCCTTTTGA
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