mRNA_Ecto-sp13_S_contig81470.19491.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig81470.19491.1
Unique NamemRNA_Ecto-sp13_S_contig81470.19491.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig81470.19491.1 vs. uniprot
Match: D7FYZ1_ECTSI (TauD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ1_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 6.070e-33
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:   40 KVDAREYMEDDGELYKALRKINRVGVVLLENAGVEEGAVLDLARRVAPVSHHTLYGDMFDVVSQ 231
            KVDAREYMEDDG LYK LRK+NRVGVVLLENAGVEEG VLDLARRVAPVSHHTLYGDMFDVVSQ
Sbjct:   90 KVDAREYMEDDGALYKTLRKVNRVGVVLLENAGVEEGTVLDLARRVAPVSHHTLYGDMFDVVSQ 153
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BLAST of mRNA_Ecto-sp13_S_contig81470.19491.1 vs. uniprot
Match: A0A6H5KBM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM7_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.090e-27
Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   40 KVDAREYMEDDGELYKALRKINRVGVVLLENAGVEEGAVLDLARRVAPVSHHTLYGDMFDVVSQ 231
            KVDAR+YMED G +Y+ LRKINRVGVVLLENAG EEG VLDLARRVAPVSHHTLYG+MFDV+SQ
Sbjct:  191 KVDARDYMEDGGAVYRTLRKINRVGVVLLENAGAEEGTVLDLARRVAPVSHHTLYGEMFDVISQ 254
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BLAST of mRNA_Ecto-sp13_S_contig81470.19491.1 vs. uniprot
Match: A0A024GIV2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GIV2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.930e-5
Identity = 23/63 (36.51%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   43 VDAREYMEDDGELYKALRKINRVGVVLLENAGVEEGAVLDLARRVAPVSHHTLYGDMFDVVSQ 231
            VD    ME D  +++ L  +   G  +++    + G V  +A+R+AP+SH  LYG++FDVVS+
Sbjct:  186 VDYTYVMESDRGVFELLHNVVEYGCCVVKETPTKAGEVKKIAKRIAPISHSFLYGEIFDVVSE 248
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig81470.19491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYZ1_ECTSI6.070e-3393.75TauD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KBM7_9PHAE1.090e-2784.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024GIV2_9STRA2.930e-536.51Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig81470contigEcto-sp13_S_contig81470:53..304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score123.6
Seed ortholog evalue4.3e-26
Seed eggNOG ortholog2880.D7FYZ1
Model size252
KEGG rclassRC00773
KEGG koko:K00474
KEGG ReactionR03451
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.trimethyllysine dioxygenase activity
EggNOG OGsCOG2175@1,KOG3889@2759
EC1.14.11.8
Cds size252
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464086.944059-CDS-Ecto-sp13_S_contig81470:52..3041681464086.944059-CDS-Ecto-sp13_S_contig81470:52..304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig81470 53..304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig81470.19491.1prot_Ecto-sp13_S_contig81470.19491.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig81470 53..304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig81470.19491.1

>prot_Ecto-sp13_S_contig81470.19491.1 ID=prot_Ecto-sp13_S_contig81470.19491.1|Name=mRNA_Ecto-sp13_S_contig81470.19491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
HVSLIAHNVCVSHKVDAREYMEDDGELYKALRKINRVGVVLLENAGVEEG
AVLDLARRVAPVSHHTLYGDMFDVVSQVKHTPR*
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mRNA from alignment at Ecto-sp13_S_contig81470:53..304-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig81470.19491.1 ID=mRNA_Ecto-sp13_S_contig81470.19491.1|Name=mRNA_Ecto-sp13_S_contig81470.19491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81470:53..304- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGTTTCCCTTATCGCCCACAACGTATGTGTGTCCCACAAGGTGGATGC
CCGAGAATACATGGAGGACGACGGCGAGCTGTACAAGGCGCTGAGAAAGA
TCAACCGGGTGGGCGTGGTCCTGCTCGAGAACGCCGGGGTCGAAGAGGGA
GCGGTGCTCGACTTGGCCCGCCGCGTAGCGCCCGTGTCCCACCACACCCT
CTACGGCGACATGTTCGACGTGGTCTCTCAGGTGAAACACACGCCGCGGT
AA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig81470:53..304-

>mRNA_Ecto-sp13_S_contig81470.19491.1 ID=mRNA_Ecto-sp13_S_contig81470.19491.1|Name=mRNA_Ecto-sp13_S_contig81470.19491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81470:53..304- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGTTTCCCTTATCGCCCACAACGTATGTGTGTCCCACAAGGTGGATGC
CCGAGAATACATGGAGGACGACGGCGAGCTGTACAAGGCGCTGAGAAAGA
TCAACCGGGTGGGCGTGGTCCTGCTCGAGAACGCCGGGGTCGAAGAGGGA
GCGGTGCTCGACTTGGCCCGCCGCGTAGCGCCCGTGTCCCACCACACCCT
CTACGGCGACATGTTCGACGTGGTCTCTCAGGTGAAACACACGCCGCGGT
AA
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