mRNA_Ecto-sp13_S_contig8132.19472.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8132.19472.1 vs. uniprot
Match: D7G430_ECTSI (Plastid thioredoxin M n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G430_ECTSI) HSP 1 Score: 279 bits (713), Expect = 2.030e-89 Identity = 136/146 (93.15%), Postives = 140/146 (95.89%), Query Frame = 1
Query: 1 RCSGCTPAGGSRVDAKTGPRSPRTTAPSYVCSGERPGTTRLFAKATYKNFEDMLEKEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAELLIQQLRYFLG 438
RCS CTPA G RVDAKTGPRSPRTTA SYVC GERP +TRLFAKATYKNFEDMLEKEPGALLVDFYATWCGPCSMMS+NLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAE+LIQ+LRYFLG
Sbjct: 30 RCSECTPADGGRVDAKTGPRSPRTTALSYVCGGERPSSTRLFAKATYKNFEDMLEKEPGALLVDFYATWCGPCSMMSDNLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAEMLIQELRYFLG 175
BLAST of mRNA_Ecto-sp13_S_contig8132.19472.1 vs. uniprot
Match: A0A6H5JZH9_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH9_9PHAE) HSP 1 Score: 284 bits (726), Expect = 3.300e-84 Identity = 140/146 (95.89%), Postives = 141/146 (96.58%), Query Frame = 1
Query: 1 RCSGCTPAGGSRVDAKTGPRSPRTTAPSYVCSGERPGTTRLFAKATYKNFEDMLEKEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAELLIQQLRYFLG 438
RCSGCT A GSRVDAKTGPRSPRTTA SYVCSGERPGTT LFAKATYKNFEDML KEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAE+LIQQLRYFLG
Sbjct: 663 RCSGCTSAEGSRVDAKTGPRSPRTTASSYVCSGERPGTTSLFAKATYKNFEDMLAKEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAEMLIQQLRYFLG 808
BLAST of mRNA_Ecto-sp13_S_contig8132.19472.1 vs. uniprot
Match: A0A7S0QCE2_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QCE2_9CRYP) HSP 1 Score: 123 bits (308), Expect = 2.480e-30 Identity = 55/95 (57.89%), Postives = 70/95 (73.68%), Query Frame = 1
Query: 121 LFAKATYKNFEDMLEKEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAE 405
+ K T+KNF+DM++ +LVDFYA WCGPC MMS LA VG M D+++I KIDTDKYPN+ S+F + LPT VLFK+GK + R EGVMPA+
Sbjct: 31 MATKQTFKNFDDMIDNSDTPVLVDFYAVWCGPCVMMSRELATVGTDMGDKIRIVKIDTDKYPNIASRFQIAALPTCVLFKDGKPVERFEGVMPAQ 125
BLAST of mRNA_Ecto-sp13_S_contig8132.19472.1 vs. uniprot
Match: A0A8J7E5E3_9CYAN (Thioredoxin n=1 Tax=Nodosilinea sp. LEGE 07088 TaxID=2777968 RepID=A0A8J7E5E3_9CYAN) HSP 1 Score: 120 bits (300), Expect = 1.510e-29 Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 1
Query: 130 KATYKNFEDMLEKEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAELLIQQLR 426
K +++FED+L +LVDFYATWCGPC MM+ LA V ++K ELKI KIDTDKYP + S++ V LPTLVLFK GK + R+EGV+PAE L+ +LR
Sbjct: 4 KQQFQSFEDLLAGAETPVLVDFYATWCGPCQMMASILATVSRRLKGELKIVKIDTDKYPQIASQYQVAALPTLVLFKAGKPIDRIEGVLPAEQLVTRLR 102
BLAST of mRNA_Ecto-sp13_S_contig8132.19472.1 vs. uniprot
Match: A0A2W7A323_9CYAN (Thioredoxin n=8 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A2W7A323_9CYAN) HSP 1 Score: 119 bits (297), Expect = 4.110e-29 Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 1
Query: 121 LFAKATYKNFEDMLEKEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAELLIQQLRYFLG 438
+ K +++FED+L G +LVDFYATWCGPC MM+ L V ++K +LKI KIDTDKYP + S++ + LPTLVLFK G+ + R+EGV+PA+ L+ +L+ LG
Sbjct: 1 MAVKQQFQSFEDLLAGASGPVLVDFYATWCGPCQMMASILTTVSSQLKGQLKIVKIDTDKYPQIASQYRIAALPTLVLFKSGQPIDRIEGVLPADQLVARLQPHLG 106
BLAST of mRNA_Ecto-sp13_S_contig8132.19472.1 vs. uniprot
Match: UPI0019F9FA10 (Thioredoxin n=1 Tax=Pleurocapsales cyanobacterium LEGE 10410 TaxID=1828828 RepID=UPI0019F9FA10) HSP 1 Score: 117 bits (294), Expect = 1.080e-28 Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1
Query: 121 LFAKATYKNFEDMLEKEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAELLIQQLRYFL 435
+ K + +F+D+L+ +LVDFYATWCGPC MMS L VG ++D L++ KIDTDKYPNL SK+ V LPTLVLFK G+ ++EGV+ A+ LIQ L F+
Sbjct: 1 MAVKKQFSSFQDLLDNSEIPVLVDFYATWCGPCQMMSPILEQVGASLRDRLQVVKIDTDKYPNLASKYQVEALPTLVLFKNGQPAEKIEGVLQAQQLIQHLSNFV 105
BLAST of mRNA_Ecto-sp13_S_contig8132.19472.1 vs. uniprot
Match: UPI00140C7156 (thioredoxin n=1 Tax=Aphanocapsa montana TaxID=327565 RepID=UPI00140C7156) HSP 1 Score: 117 bits (294), Expect = 1.080e-28 Identity = 53/95 (55.79%), Postives = 74/95 (77.89%), Query Frame = 1
Query: 139 YKNFEDMLEKEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAELLIQQL 423
+++F+D+L++ P +LVDFYATWCGPC M+S L+ V +KD++++ KIDTDKYP+L KF V+ LPTLVLFK G + R+EGV PAE +I+QL
Sbjct: 7 FQSFDDLLQQSPKPVLVDFYATWCGPCRMLSPILSQVQTLLKDKIQVVKIDTDKYPDLAQKFSVHALPTLVLFKAGVPVHRLEGVAPAEKIIEQL 101
BLAST of mRNA_Ecto-sp13_S_contig8132.19472.1 vs. uniprot
Match: UPI001F003FC8 (thioredoxin n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F003FC8) HSP 1 Score: 117 bits (292), Expect = 2.100e-28 Identity = 54/105 (51.43%), Postives = 78/105 (74.29%), Query Frame = 1
Query: 121 LFAKATYKNFEDMLEKEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAELLIQQLRYFL 435
+ K + +F++M+ + +LVDFYATWCGPC MM++ L V +KD+L+I KID+DKYP L +++ ++ LPTLVLFK+GK + R+EGV+ AE LIQ+LR FL
Sbjct: 1 MATKKQFTSFDEMINESDLPVLVDFYATWCGPCQMMAKILEQVNVLLKDQLRIVKIDSDKYPELATQYEIHALPTLVLFKQGKPVERIEGVLRAEQLIQRLRSFL 105
BLAST of mRNA_Ecto-sp13_S_contig8132.19472.1 vs. uniprot
Match: B1WQM8_CROS5 (Thioredoxin n=4 Tax=Oscillatoriophycideae TaxID=1301283 RepID=B1WQM8_CROS5) HSP 1 Score: 116 bits (291), Expect = 2.930e-28 Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 130 KATYKNFEDMLEKEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAELLIQQL 423
K + +FE+ML +LVDFYATWCGPC MMS L VG +M++ L++ KIDTDKYP + SK+G+ LPTLVLFK+G+ + R+EG M A LIQ L
Sbjct: 4 KKQFSSFEEMLSTSTVPVLVDFYATWCGPCQMMSPILEQVGTQMRNRLQVVKIDTDKYPGIASKYGIQSLPTLVLFKKGEPVERLEGAMQASQLIQHL 101
BLAST of mRNA_Ecto-sp13_S_contig8132.19472.1 vs. uniprot
Match: A0A2T1LXK9_9CHRO (Thioredoxin n=1 Tax=Aphanothece hegewaldii CCALA 016 TaxID=2107694 RepID=A0A2T1LXK9_9CHRO) HSP 1 Score: 116 bits (291), Expect = 2.930e-28 Identity = 55/102 (53.92%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 130 KATYKNFEDMLEKEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAELLIQQLRYFL 435
K + +FED+L +LVDFYATWCGPC MMS L VG +K+ ++I KIDTDKYPNL +++ ++ LPTLVLFK G+ + R+EGV+ A+ LIQQL+ L
Sbjct: 4 KKQFTSFEDLLSNSATPVLVDFYATWCGPCQMMSPILEQVGAYLKNRVQIVKIDTDKYPNLATQYQIHALPTLVLFKNGQPIERIEGVVQAQQLIQQLQTIL 105 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8132.19472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8132.19472.1 >prot_Ecto-sp13_S_contig8132.19472.1 ID=prot_Ecto-sp13_S_contig8132.19472.1|Name=mRNA_Ecto-sp13_S_contig8132.19472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp MLEKEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPback to top mRNA from alignment at Ecto-sp13_S_contig8132:3909..6271- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8132.19472.1 ID=mRNA_Ecto-sp13_S_contig8132.19472.1|Name=mRNA_Ecto-sp13_S_contig8132.19472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8132:3909..6271- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8132:3909..6271- >mRNA_Ecto-sp13_S_contig8132.19472.1 ID=mRNA_Ecto-sp13_S_contig8132.19472.1|Name=mRNA_Ecto-sp13_S_contig8132.19472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8132:3909..6271- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |