mRNA_Ecto-sp13_S_contig8082.19423.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8082.19423.1
Unique NamemRNA_Ecto-sp13_S_contig8082.19423.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8082.19423.1 vs. uniprot
Match: A0A6H5KQR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR3_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 4.130e-101
Identity = 182/226 (80.53%), Postives = 188/226 (83.19%), Query Frame = 1 
Query:    1 QVEVAIRAVSVENQMHTNATNTHGKGASSLNDGSFQDSSTLLQHALPPFVSKGNGPENV---------------VATGGGRGAAAGEVSGVGSEVSLGGGEGGEGGGAEVERCEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPTRAASSDDNPCTSGKGGDGGGDAASRRGVGRNKPSPVGGSSARREGSSQGGDADRVSLGRLDVSV 633
            QVEVAI+AVSVENQMHT+ATNTHG+ ASSLNDGSFQDSSTLLQHAL PFVSKGN PENV               VATGG RG A GEVSGV SEVS G   GG  GGA+ ERCEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQP  AASSD NP TSGKGGDGGG+AASRRGVGRNKPS VGGSS RREGSS+ GDADRVS G LDVSV
Sbjct:  159 QVEVAIKAVSVENQMHTSATNTHGRRASSLNDGSFQDSSTLLQHALSPFVSKGNDPENVLAPAVASENSELGRVVATGGLRGTAGGEVSGVSSEVSSG---GGGAGGAKFERCEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSD-NPTTSGKGGDGGGNAASRRGVGRNKPSSVGGSSVRREGSSESGDADRVSPGGLDVSV 380
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BLAST of mRNA_Ecto-sp13_S_contig8082.19423.1 vs. uniprot
Match: D8LFQ9_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ9_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 3.190e-99
Identity = 186/226 (82.30%), Postives = 188/226 (83.19%), Query Frame = 1 
Query:    1 QVEVAIRAVSVENQMHTNATNTHGKGASSLNDGSFQDSSTLLQHALPPFVSKGNGPENV---------------VATGGGRGAAAGEVSGVGSEVSLGGGEGGEGGGAEVERCEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPTRAASSDDNPCTSGKGGDGGGDAASRRGVGRNKPSPVGGSSARREGSSQGGDADRVSLGRLDVSV 633
            QVEVAIRAVSVE+QMHT+ATNTHGKGASSLN GSFQDSSTLLQHALPPFVSKGNGPENV               VATGGGRGAAAGEVSGVG EVSLG   GG  GGAE ERC DCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQP  AASSD NP TSG GGDGGG AASRRGVGRN PS VGGSS RREGSSQ G AD VS G LDVSV
Sbjct:  957 QVEVAIRAVSVEHQMHTSATNTHGKGASSLNGGSFQDSSTLLQHALPPFVSKGNGPENVLAPAVASENSELGGVVATGGGRGAAAGEVSGVGLEVSLG---GGGAGGAEEERCGDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSDGNPSTSGTGGDGGGTAASRRGVGRNNPSSVGGSSVRREGSSQSGGADCVSPGELDVSV 1179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8082.19423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQR3_9PHAE4.130e-10180.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFQ9_ECTSI3.190e-9982.30WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8082contigEcto-sp13_S_contig8082:4554..7048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size634
Hectar predicted targeting categoryother localisation
Exons4
Cds size633
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464081.3226466-CDS-Ecto-sp13_S_contig8082:4554..47451681464081.3226466-CDS-Ecto-sp13_S_contig8082:4554..4745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8082 4555..4745 -
1681464081.34549-CDS-Ecto-sp13_S_contig8082:5369..54661681464081.34549-CDS-Ecto-sp13_S_contig8082:5369..5466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8082 5370..5466 -
1681464081.360821-CDS-Ecto-sp13_S_contig8082:6167..64361681464081.360821-CDS-Ecto-sp13_S_contig8082:6167..6436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8082 6168..6436 -
1681464081.3762324-CDS-Ecto-sp13_S_contig8082:6972..70481681464081.3762324-CDS-Ecto-sp13_S_contig8082:6972..7048Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8082 6973..7048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8082.19423.1prot_Ecto-sp13_S_contig8082.19423.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8082 4555..7048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8082.19423.1

>prot_Ecto-sp13_S_contig8082.19423.1 ID=prot_Ecto-sp13_S_contig8082.19423.1|Name=mRNA_Ecto-sp13_S_contig8082.19423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp
QVEVAIRAVSVENQMHTNATNTHGKGASSLNDGSFQDSSTLLQHALPPFV
SKGNGPENVVATGGGRGAAAGEVSGVGSEVSLGGGEGGEGGGAEVERCED
CGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPTRAA
SSDDNPCTSGKGGDGGGDAASRRGVGRNKPSPVGGSSARREGSSQGGDAD
RVSLGRLDVSV
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mRNA from alignment at Ecto-sp13_S_contig8082:4554..7048-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8082.19423.1 ID=mRNA_Ecto-sp13_S_contig8082.19423.1|Name=mRNA_Ecto-sp13_S_contig8082.19423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8082:4554..7048- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTAGAAGTGGCCATCAGAGCCGTCTCGGTCGAGAACCAGATGCACAC
TAACGCTACCAACACTCACGGCAAAGGTGAGCATACCCACCTCTTTGTCG
TGATTGTTGTGATTTTTTTTTGGGGGTACGTGGTTGTGTCTTGCTGTGGG
CGGTGCTGGCCTGGCGGTGATTTCACCACCCTCCAAATTTTGTAGTATTC
CTTCAATTCAAGCCCGCTTGCACTAGCGGGAGACAGACCCGGCGTTTAGT
GCAGTAATGTCCGAGAGGTGTAAGATTGTTTGAACAGCAACGGGCTACGG
GAAGTGGGCATCAACGTTGTTATAAAGAGCAGAGAGAAATGTGACCCCTG
TTGCCCCCCCCTCCTTCCCCCCTCCTGGCACCCAAAAACCGGCAAACTCC
ATCCGTCTATGTTTCCTGTTTTTATAGTAGAGATTGGAGCCTGTTGTTTT
CATGGCAATTTCTACACCAAGCACATGCCCAACCAAAGAAAAATCCCCCC
CTTCCGCCCCGCCCAGCTCATTGACGGTCATCGTACTCTCCCCCTCTTCC
CCCCCCGCCCAGCTCATTGACTGCCATCTTACTCCCCCCCCCCCTCCCGC
AATTCGACTAAGGCGCATCTTCGCTGAACGACGGTTCATTCCAAGACTCG
TCTACACTCCTGCAGCACGCTCTTCCTCCCTTCGTCTCGAAAGGGAACGG
TCCGGAGAACGTTGTTGCTACTGGGGGGGGGCGCGGTGCGGCGGCGGGAG
AAGTTTCCGGCGTAGGCTCGGAAGTTTCGTTGGGCGGAGGAGAAGGAGGA
GAAGGAGGAGGAGCGGAGGTGGAGCGGTGCGAGGACTGCGGGCGGACCTT
CGCCCCCGGGAGGCTTCGATCGCACGCCAAGGTGAGTGTGTGCTGGTGCT
GCAGCGCCCCGTGGGTGGGTGTGTTTCGTAACTAGCATCGACCGCGCTAA
CCGGATGTAGTAGCCGGATAAGAAGCGCGAACACGCTTTCTTTCAAACGC
TTATACCGACCGGTGTGTGTGTGTCTTTATTCTTGGCATCGACAGAGCTA
ACCGGCTGACCAATGAAAAGACGTCAGTCTCAGTGCGGTTAAAAACACTT
GAAAATATCATAAAGTGGGACCCCGTGAGGAGGCGGCATGGGGGAGGATA
AGCTATTCTCCGGATCAAAGATAGATTCGGTTACAACAGAGGAGATCTGC
ACGTGTCTACCGATGTGTGTGTGTGCGCGCGTCCCAACCAACCAAACCTT
CGGGCAAGTCGACGGTGCTCGGTCAGCTAGGGATCAAAATGGGCTCTTCG
GAGGAAGGAACAGGGTTGCTTTGTTTACTTGCTCGCTCCAACGTGCAAGT
GTGGTGCTGGTGTTGCAAGATTTGGTACGCTCGAACGGATCAACTAAATA
ACTCTTCACGCGTGAGTTGAACAAGCTCACGAACAAAACAACACAAAAAA
CTTGCAAAGGTGTTCATTTTATTTTATTTTGCTCAGCGCTGGCAGTGAGA
AGTAGTTCAGAGAGAGATAATTGGAATTTTTTTCTTCGCCATTTTTTTTT
TTTTTTTTTCACTTTGGGTTTTTGCGGTGCAGGCATGCCGAAGTGTGTTC
TTGGAGCGCCGCCGCCCGTACGACCCGAAGGCAATGCGGGCAAGGGGGAC
ACCGCTCGAGTTCTTCCAGCAGCCCACCCGTGAGTGGTGCTCCGCATGCC
CGAACAAGCGGACGTGGAACATTCCGTGTGCTTGCAGGCGGTGTTGAGCA
GCGGTGGTGGAGGTTCGGTGGGTATTCCGTTTGCCGGGCAAGGGAGTATG
GAACGTAAACTTTCCGTGTGCTGCTGTTGGTATATCAGCGGTTGTAATCG
CGGTTGGTGCCGGTGTTGTCAGTGGTTGCGATAGTGGTGTTGTTGTTGTG
GTTGTTCTTGTCCAGGCTACATGTGCCTCGCAAGCTGAAACTATTGTGGT
GGCCTTGCGACGAACATTTTGCCGGGACGAATGGATGTCCTCATTTGTTC
TCGACGTCGTCGTCGGTTCTGCTCTTTTTTGTCTCCGTCTTCTTCTGATT
CCGTTCCATCCACCACTAGCTCCTAAAAGCTGAAACTATGACGCCGGCTG
GTACAGTGCTCGTTCGCTGATGGAACCATCACGCAACCAACGACAACAAA
CGATGATACGATGACACCCACCTCTTTTGAGGGATTTACTCCACGGAGCT
CCTGCTACCAAGCCCCCTCCAAAAGCCTTAACCCTCTACTAAATTAGAAT
ACCCCGATATTCCCTGCGCCCCTTCCCCGACACACCAACTTCCGACGCTA
CAGGCGCGGCGAGCTCCGACGACAACCCTTGCACGTCAGGCAAGGGGGGA
GACGGCGGGGGCGACGCGGCATCGAGAAGGGGGGTTGGCAGAAACAAGCC
GTCCCCCGTCGGAGGGAGTTCCGCGAGGCGGGAGGGGTCCTCTCAGGGCG
GGGACGCGGACCGCGTGTCCCTGGGGAGGCTGGATGTTTCTGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8082:4554..7048-

>mRNA_Ecto-sp13_S_contig8082.19423.1 ID=mRNA_Ecto-sp13_S_contig8082.19423.1|Name=mRNA_Ecto-sp13_S_contig8082.19423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8082:4554..7048- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTAGAAGTGGCCATCAGAGCCGTCTCGGTCGAGAACCAGATGCACAC
TAACGCTACCAACACTCACGGCAAAGGCGCATCTTCGCTGAACGACGGTT
CATTCCAAGACTCGTCTACACTCCTGCAGCACGCTCTTCCTCCCTTCGTC
TCGAAAGGGAACGGTCCGGAGAACGTTGTTGCTACTGGGGGGGGGCGCGG
TGCGGCGGCGGGAGAAGTTTCCGGCGTAGGCTCGGAAGTTTCGTTGGGCG
GAGGAGAAGGAGGAGAAGGAGGAGGAGCGGAGGTGGAGCGGTGCGAGGAC
TGCGGGCGGACCTTCGCCCCCGGGAGGCTTCGATCGCACGCCAAGGCATG
CCGAAGTGTGTTCTTGGAGCGCCGCCGCCCGTACGACCCGAAGGCAATGC
GGGCAAGGGGGACACCGCTCGAGTTCTTCCAGCAGCCCACCCGCGCGGCG
AGCTCCGACGACAACCCTTGCACGTCAGGCAAGGGGGGAGACGGCGGGGG
CGACGCGGCATCGAGAAGGGGGGTTGGCAGAAACAAGCCGTCCCCCGTCG
GAGGGAGTTCCGCGAGGCGGGAGGGGTCCTCTCAGGGCGGGGACGCGGAC
CGCGTGTCCCTGGGGAGGCTGGATGTTTCTGTC
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