mRNA_Ecto-sp13_S_contig8043.19376.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8043.19376.1
Unique NamemRNA_Ecto-sp13_S_contig8043.19376.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 6.390e-65
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 1
Query:    1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVVS 348
            MLTFHKRMSIVTDTLSRASTHL+HFLFVFFLVILAF+AL WLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGV S
Sbjct:    1 MLTFHKRMSIVTDTLSRASTHLNHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVAS 116          
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: D7FTQ7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ7_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 1.020e-63
Identity = 108/116 (93.10%), Postives = 110/116 (94.83%), Query Frame = 1
Query:    1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVVS 348
            MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAF+AL WLLVGSSTKEFSTL +AW SV RISLGESENFYPQILDAQPTVGPV VVLYQVLGVVLLLNVVIAI LEAYRGVVS
Sbjct:    1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLVEAWGSVTRISLGESENFYPQILDAQPTVGPVAVVLYQVLGVVLLLNVVIAIFLEAYRGVVS 116          
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: D7FTQ6_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ6_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 6.300e-62
Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = 1
Query:    1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAY 333
            MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAF+AL WLLVGSSTKEFSTLEDAW+SV RISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLE +
Sbjct:   32 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLETF 142          
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: A0A6H5JIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW8_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.570e-30
Identity = 67/105 (63.81%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFL--------------------------VILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDA 237
            M TFHKRMSIV DTLSRASTHL  FLFVFFL                          V+LAF+AL +LLVGSSTKE STLEDAWRSVIRIS GES+N YPQILDA
Sbjct:   57 MFTFHKRMSIVPDTLSRASTHLTQFLFVFFLERLTQLPDKRCLGVLVLVVVLTTPMVVVLAFAALTFLLVGSSTKEISTLEDAWRSVIRISPGESDNLYPQILDA 161          
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 8.120e-19
Identity = 47/114 (41.23%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGV 342
            ML FH R+S+VTD L+ ++ HL HF  +FF+V+  +S L W++ G S+  F+T   ++ ++ RI+LGE +N YP +++       +++V YQ L  +LLLN+VI+ILL+A++ V
Sbjct:  242 MLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVYSNLVWVIFGPSSLLFATWTKSFVTMTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQCILLLNIVISILLDAFQMV 355          
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: A0A8J5X0G5_DIALT (PKD_channel domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X0G5_DIALT)

HSP 1 Score: 69.3 bits (168), Expect = 2.270e-11
Identity = 41/113 (36.28%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    4 LTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGV 342
            L FH++ S+VT TL RA   L HFL VF +V++ ++ + + ++G   + ++TL  A  S+  + + +    +  I+D  P VGPV    Y +L  ++L+NV++AILL+AY  V
Sbjct:  540 LAFHQQFSLVTATLLRAGASLAHFLVVFAIVLVMYAFVGFNMLGHKLERYNTLGKAINSMCSMLVFDDTVSFADIMDVAPLVGPVFYWSYFILSSLMLINVLLAILLDAYASV 652          
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: A0A7S0MWE4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MWE4_9CRYP)

HSP 1 Score: 58.2 bits (139), Expect = 1.780e-7
Identity = 39/112 (34.82%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   10 FHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSV----IRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAY 333
            F  R++I+  TLS A+  L HF+ +F  V +A++ +A +L G+    FSTL   +RS+    I + +G +  +Y QI    PT+  V  + + +L  V+L+N+++AIL++AY
Sbjct:  416 FQPRLAIINKTLSIAAIDLLHFVIMFVTVFVAYAVMANILFGTEINNFSTL---YRSITTLFIWVLVGGAPTYYAQITHVAPTMAFVFYLTFMLLVFVVLMNLLLAILVDAY 524          
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: UPI0009E1FD1A (location of vulva defective 1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1FD1A)

HSP 1 Score: 54.7 bits (130), Expect = 3.190e-6
Identity = 38/116 (32.76%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVVS 348
            ++ F++ +  +  TL+RA+  L  +  VF   +LA++ LA+LL+ S+ + +S+  ++ R+V+++ LG    FY +I      +GP+ V LY    + +LLN+ +AIL E+Y  VV 
Sbjct: 2097 LIRFNRHVCQMMGTLARAARPLVSYSVVFVSAVLAYTLLAFLLLSSTMRPYSSFFNSLRAVLQMLLGGKIFFY-EIKSVNSLLGPLFVFLYMFTMMFILLNMFLAILNESYWEVVD 2211          
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: A0A6G0R7K6_9STRA (5'-nucleotidase n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0R7K6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.250e-6
Identity = 38/114 (33.33%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    7 TFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVVS 348
            T  KRMS++   L RA+  L  F   F + I AF+ +  LL G   + FS+L  A  ++++   GE +  Y  + D+    GP+  +LY +L +++L+NV +AIL +AY   ++
Sbjct:  764 TVSKRMSLLLRMLGRAARDLAWFFVCFLVCICAFAQIGLLLFGLDVRGFSSLGSAIVTLLQAVAGELD--YAGMADSHRVAGPIFYILYYLLLLLILVNVFLAILNDAYMQTIT 875          
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: A0A553QYP4_9TELE (PLAT domain-containing protein n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553QYP4_9TELE)

HSP 1 Score: 53.9 bits (128), Expect = 5.770e-6
Identity = 24/88 (27.27%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVV 264
            +L  + +++++T +L RA + +  F+FV F++++A+S    L+ G     + TL DA+RS+  + +G     Y +++D  P +G +++
Sbjct:  951 LLRLNPKLNLITSSLQRAWSDMSSFVFVLFIILIAYSITCNLIFGWKLSSYKTLPDAFRSIFSLQMGIFN--YDEVMDTDPELGAIII 1036          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5L574_9PHAE6.390e-6596.55PKD_channel domain-containing protein n=1 Tax=Ecto... [more]
D7FTQ7_ECTSI1.020e-6393.10Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
D7FTQ6_ECTSI6.300e-6294.59Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
A0A6H5JIW8_9PHAE3.570e-3063.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2W7_ECTSI8.120e-1941.23Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
A0A8J5X0G5_DIALT2.270e-1136.28PKD_channel domain-containing protein n=2 Tax=Diac... [more]
A0A7S0MWE4_9CRYP1.780e-734.82Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
UPI0009E1FD1A3.190e-632.76location of vulva defective 1-like n=1 Tax=Orbicel... [more]
A0A6G0R7K6_9STRA4.250e-633.335'-nucleotidase n=2 Tax=Phytophthora fragariae Tax... [more]
A0A553QYP4_9TELE5.770e-627.27PLAT domain-containing protein n=1 Tax=Danionella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8043contigEcto-sp13_S_contig8043:3..1761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score195.3
Seed ortholog evalue1.6e-47
Seed eggNOG ortholog2880.D7FTQ7
Model size348
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
Cds size348
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464077.6481125-CDS-Ecto-sp13_S_contig8043:2..231681464077.6481125-CDS-Ecto-sp13_S_contig8043:2..23Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8043 3..23 -
1681464077.6624162-CDS-Ecto-sp13_S_contig8043:837..10711681464077.6624162-CDS-Ecto-sp13_S_contig8043:837..1071Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8043 838..1071 -
1681464077.673058-CDS-Ecto-sp13_S_contig8043:1668..17611681464077.673058-CDS-Ecto-sp13_S_contig8043:1668..1761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8043 1669..1761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8043.19376.1prot_Ecto-sp13_S_contig8043.19376.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8043 3..1761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8043.19376.1

>prot_Ecto-sp13_S_contig8043.19376.1 ID=prot_Ecto-sp13_S_contig8043.19376.1|Name=mRNA_Ecto-sp13_S_contig8043.19376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKE
FSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLL
NVVIAILLEAYRGVVS
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mRNA from alignment at Ecto-sp13_S_contig8043:3..1761-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8043.19376.1 ID=mRNA_Ecto-sp13_S_contig8043.19376.1|Name=mRNA_Ecto-sp13_S_contig8043.19376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8043:3..1761- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCACCTTCCACAAGCGCATGAGCATTGTCACCGACACCCTGAGCAG AGCGAGCACCCACCTTGACCACTTCCTGTTCGTGTTTTTCCTGGTAAGGC TGACACAGTTGCCGGACAAGAGGTTTCTTGGGGTACTCGTACTGCTATTA GTGCTGACGACGCTGTCGATGGCGTGTTGTACGTGGTCGTGGTGGTCAAT GGTCGTCCTTCACCTCTCGGTGTGGTCGTGTTTTAGCCCACTTTCTTTGT GGGCCGAGGTGAAGACAGGCATTATTTCCTTTTGAAAACTGTTGCTTGTA TTGAAATGCTCGCAGAGACGGATGTAACAACACAACAGTGAAATGTACTG GGACTCAATACTACCATGTCCGTTTCTTGTGTTTCCGGCGTGGTGTTTTT GCCACCATTACGCTCGGCAGGCTTCTCCCTTCTCTCCGTGCCCACCACGC AAACATTGATTAAGTTTCGAATCGTATGCGGTCGGCCGTTTACGACCCGA CCGTCGTACGTGTCGAAGGGCGTGTCGGAAGTTCACCGACCAAAGCACCG GCTAGATGTCAAAGTCTCGACAAGGGGGGAATCAACACGTGCATGCCCGC GAAGAAACCCATATGAGTGCATAGGAATAAAAGCAACAGACTGGGATGAA ACCCGGCTAATTTTTTTTTTTTCCCTCTCGCTTTCCCCAGGTGATCCTTG CCTTTTCCGCCCTCGCATGGCTCCTCGTCGGGTCCAGCACGAAAGAGTTT TCCACCCTGGAGGACGCGTGGCGGAGCGTGATCCGCATCTCGCTCGGGGA GTCGGAGAATTTCTACCCGCAGATCCTGGACGCGCAGCCCACGGTCGGGC CGGTGGTGGTGGTGCTGTACCAGGTCCTGGGCGTGGTGTTGCTGCTGAAC GTGGTGATCGCCATCCTTCTTGAGGTAGGGTGTTTAGTGTTGTTGTTGTT GTTGTTGTTGGTATTGGTAGTGGCGTGTTGGTTGTTTTTTTGTTGCTGCT GTAGTTGTTTAAGAGTTGCTCATCCTCGTGTTTCGCAAGTTGTGTTGCTG ACAGAGACCTTCCGTGCGGCTTCGGTTGCTGATGGCACTACCGCTAGTGT TCTACCGCCAGGTTGTGGTGGTGGTAGCATGGGTCATGAAGCTTCGGAGG CACGGAATGAGGGTGGATAGCGTTGGAACGTGTTATCGTCCCGAAAGTGA TGGATCGCTCTGTTGCCGATGTGGCACGTCTTATTTTGTATTCTTTAGGG TAAGCATTGGAGTTCCGCGGTACTTAAAAGAAGAATTAAAACAATTTGTC TTGATAACAGTCGTCCGACCCTGCCCATGCGAAGTAGCACTGTACTTGCG AAAAGCCCGAGGATACAAAGTAGATCGCCCTGCCCGCACGCGAAGACTAA GCCGGAGACTATGCCGAAAACACCTATGCTGCAGCACGACCGAACGCAAT GAGCCTCAAAGAATCTGTCTCGCGCCTTCACGGAGCCGGGAGTTGTTCAT ATTATGGAGTCTCCGCCCAACCTTATGACCCCCCCCCCCCCCCCCCAACT AAAAAAAAAACACAAACAAAAACCAAACCAAACAAACACCTCNNNNNNNN NNCCCCCCCTTATCCCCCCCCCCCCCCCCCCCCAACGAAAGGAGAAGATG CTTTCTGTCGTAACCCCCACCCCCATGCCTTTCAGCCGGATCCCGAATAA TTCCCCCGACGCTCGCGCTCCCTGTCGTCGTTGTCAAGGCCTACCGAGGA GTTGTAAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8043:3..1761-

>mRNA_Ecto-sp13_S_contig8043.19376.1 ID=mRNA_Ecto-sp13_S_contig8043.19376.1|Name=mRNA_Ecto-sp13_S_contig8043.19376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8043:3..1761- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCACCTTCCACAAGCGCATGAGCATTGTCACCGACACCCTGAGCAG
AGCGAGCACCCACCTTGACCACTTCCTGTTCGTGTTTTTCCTGGTGATCC
TTGCCTTTTCCGCCCTCGCATGGCTCCTCGTCGGGTCCAGCACGAAAGAG
TTTTCCACCCTGGAGGACGCGTGGCGGAGCGTGATCCGCATCTCGCTCGG
GGAGTCGGAGAATTTCTACCCGCAGATCCTGGACGCGCAGCCCACGGTCG
GGCCGGTGGTGGTGGTGCTGTACCAGGTCCTGGGCGTGGTGTTGCTGCTG
AACGTGGTGATCGCCATCCTTCTTGAGGCCTACCGAGGAGTTGTAAGT
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