mRNA_Ecto-sp13_S_contig7385.18561.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: D8LTH1_ECTSI (Shikimate Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH1_ECTSI) HSP 1 Score: 436 bits (1120), Expect = 2.420e-154 Identity = 220/223 (98.65%), Postives = 221/223 (99.10%), Query Frame = 1
Query: 1 MRKSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
MR+SAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEE FRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLK EDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW
Sbjct: 1 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEGFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 223
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A6H5JIK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK7_9PHAE) HSP 1 Score: 434 bits (1115), Expect = 1.740e-152 Identity = 219/223 (98.21%), Postives = 221/223 (99.10%), Query Frame = 1
Query: 1 MRKSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
MR+SAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDM+PKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLK EDGVDDITYNVVN ILEFIDSNPPKWQKWKEKANAAGIEW
Sbjct: 71 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMKPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNAILEFIDSNPPKWQKWKEKANAAGIEW 293
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A835ZK89_9STRA (Shikimate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK89_9STRA) HSP 1 Score: 251 bits (640), Expect = 3.910e-81 Identity = 125/214 (58.41%), Postives = 162/214 (75.70%), Query Frame = 1
Query: 46 LRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQA------DVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
+RLQ AELGS+LRGTNV+FVGMMGTGK++VAR LAD MGRY F+DTD IIE+L+ A V +VF + GEE FR +E++VL+++HSYVK+ VATGGGIV E +NWGK+QTG+VVWLDM DI +RLS + EEV+KR LL G D KL+ + ++RK Y QA DV V + +D VD + + V+ + +FIDSNPPKWQ+WK+ A A+GI W
Sbjct: 18 IRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINW 231
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A7R9UH62_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH62_9STRA) HSP 1 Score: 207 bits (527), Expect = 9.590e-64 Identity = 108/205 (52.68%), Postives = 138/205 (67.32%), Query Frame = 1
Query: 16 GLSMEV-EPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKW 627
GL +V E + + L SRL GT+++FVGMMGTGKST R LA + Y FLDTDT+IE G +F K+GEE FR++ES V+DQ +Y ++C+ATGGG V N+NWGKMQTG+VVWL MEP++I ER S + EEV KRPLL G D KL E+L+KRK +Y ADV VQL D V+++ V I F+D NPPK+
Sbjct: 38 GLRADVQEEKAVEDEFTRLASRLYGTSIYFVGMMGTGKSTTGRELAKKLPGYSFLDTDTVIEAYAGQDCSAIFEKEGEEGFRNIESMVMDQACAYRRLCIATGGGAVLRNQNWGKMQTGIVVWLQMEPEEIAERFSGNDEEVEKRPLLQGGDAVDKLREILDKRKEKYEVADVHVQLSPGDSVEEVVERVCGKIHRFMDENPPKF 242
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A6U3Q8M5_9STRA (Shikimate kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q8M5_9STRA) HSP 1 Score: 208 bits (529), Expect = 1.710e-63 Identity = 107/219 (48.86%), Postives = 153/219 (69.86%), Query Frame = 1
Query: 16 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAED-GVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
G M ++P A LG RL+G+N++FVGMMG+GKS V A+A MG Y FLDTDTIIE + A++ E+FA++GE+ FR +ESQVLD VH++V+ V+TGGGIV + NW K+Q+G+V+W+D+ P I+ R+ KD ++ RPLL D+P LE+LLE+RKP+Y+QADV +++ E ++D+ VV + FID NPP W+ K KA A G++W
Sbjct: 85 GEGMTIDP------ARLLGPRLQGSNLYFVGMMGSGKSAVGDAVARRMGSYNFLDTDTIIESVTNATITEIFAQEGEDTFRDIESQVLDSVHAHVRCVVSTGGGIVKKLSNWAKLQSGVVIWIDVPPSVIYNRI-KDKDD---RPLLQNDNPLETLEKLLEERKPRYSQADVRIEVNDESMSIEDVASKVVQDLHNFIDENPPAWKIAKAKAQAEGLDW 293
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A7S1Z366_TRICV (Shikimate kinase n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z366_TRICV) HSP 1 Score: 202 bits (514), Expect = 6.800e-61 Identity = 103/218 (47.25%), Postives = 147/218 (67.43%), Query Frame = 1
Query: 16 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
G M+++P A LG RL+G+N++F+GMMG+GKS V +A MG Y FLDTD+IIE+ G ++ E+F +GEE FR VE Q+LD VH+YV+ V+TGGGIV +NW K+QTG+VVWLD++P+ I +R+ D RPLL DDP KL++LL +R+ +YAQAD+ +++ + D + V+ + FID NPP W+K K KA A G++W
Sbjct: 112 GEGMKIDP------ARLLGPRLQGSNLYFIGMMGSGKSAVGDIVARRMGTYNFLDTDSIIEKATGMTIPEIFEAEGEEGFRQVEGQILDSVHAYVRCVVSTGGGIVCRLQNWAKLQTGLVVWLDVDPEVIIKRIEGD----ENRPLLQTDDPLKKLKDLLGEREERYAQADLRIEVTEDMDEDAVANMVIKELHYFIDENPPAWKKAKAKAQADGLDW 319
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A7R9ZGS2_9STRA (Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGS2_9STRA) HSP 1 Score: 200 bits (508), Expect = 2.580e-60 Identity = 102/218 (46.79%), Postives = 145/218 (66.51%), Query Frame = 1
Query: 16 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
G M+++P A LG RL+G+N++FVGMMG+GKS V +A MG Y FLDTD IIE+ S+ E+F +GEE FR E+QVLD VH+YV+ ++TGGG+V NW K+QTG+V+WLD++P+ I +R+ D RPLL DDP KL++LLE+R+ +Y+QADV +++ + + + VV + FID NPP W+K K KA A G++W
Sbjct: 87 GEGMKIDP------ARLLGPRLQGSNLYFVGMMGSGKSAVGDVVARRMGTYNFLDTDEIIEKATAMSIPEIFDAEGEEGFREAEAQVLDSVHAYVRCVISTGGGLVCRMGNWSKLQTGVVIWLDVDPELIIKRIEGD----TNRPLLQADDPLQKLKDLLEERREKYSQADVRIEVTEDMDENAVADLVVKELHNFIDENPPAWKKAKAKAQAEGLDW 294
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A7S1XQA2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQA2_9STRA) HSP 1 Score: 197 bits (500), Expect = 8.010e-60 Identity = 101/209 (48.33%), Postives = 137/209 (65.55%), Query Frame = 1
Query: 25 MEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKAN 651
+E EP + L RL+G +++ VGMMGTGKST + LA MG Y FLDTDT+IE G +F ++GEEAFR +E+ V+DQ +Y ++CVATGGG+V KNW KMQTG+VVWL+M+P DI ERLS +EV KRPLLA DP KL E+L++R+ +YA AD+T+ + + V + + FID NPP++ + E AN
Sbjct: 35 LEQEPD----EYVRLAERLQGASLYLVGMMGTGKSTAGKELAKRMGGYSFLDTDTVIEAYAGRDCATIFEEEGEEAFRDIETMVMDQACAYKRLCVATGGGMVLRTKNWSKMQTGIVVWLNMDPADIAERLSASSDEVTKRPLLAEADPAAKLTEILDERRDRYAIADITLDMTKXXXXXXVVRMVCSRVHSFIDKNPPRFTESSEYAN 239
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: K0RFC3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RFC3_THAOC) HSP 1 Score: 198 bits (503), Expect = 8.880e-60 Identity = 96/201 (47.76%), Postives = 141/201 (70.15%), Query Frame = 1
Query: 67 LGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
L RLRG N++ +GMMG+GKS V ALA MG Y FLDTD I+E +G S+ E+F K+GE+AFR E+QVLD VH++V+ + TGGG+V+ N+NW K+QTG+V++L +P+ I++R+ E RPLL DDP L++L E+R+ +Y QADVT++++ V+ +T + + +FID NPP W++ KEKA A G++W
Sbjct: 81 LSPRLRGCNLYLIGMMGSGKSAVGDALARRMGTYNFLDTDVILERAVGMSIPEIFEKEGEDAFRDAEAQVLDSVHAHVRCVIGTGGGLVTRNQNWAKLQTGLVLYLKTDPETIYKRI-----EGTDRPLLQTDDPLATLKDLTEERRGKYEQADVTIEVEDGMDVEAVTDMCIRMLHDFIDDNPPAWKQAKEKAQADGLDW 276
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: K0SPY6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SPY6_THAOC) HSP 1 Score: 198 bits (503), Expect = 9.990e-60 Identity = 96/201 (47.76%), Postives = 141/201 (70.15%), Query Frame = 1
Query: 67 LGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
L RLRG N++ +GMMG+GKS V ALA MG Y FLDTD I+E +G S+ E+F K+GE+AFR E+QVLD VH++V+ + TGGG+V+ N+NW K+QTG+V++L +P+ I++R+ E RPLL DDP L++L E+R+ +Y QADVT++++ V+ +T + + +FID NPP W++ KEKA A G++W
Sbjct: 85 LSPRLRGCNLYLIGMMGSGKSAVGDALARRMGTYNFLDTDVILERAVGMSIPEIFEKEGEDAFRDAEAQVLDSVHAHVRCVIGTGGGLVTRNQNWAKLQTGLVLYLKTDPETIYKRI-----EGTDRPLLQTDDPLATLKDLTEERRGKYEQADVTIEVEDGMDVEAVTDMCIRMLHDFIDDNPPAWKQAKEKAQADGLDW 280 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7385.18561.1 >prot_Ecto-sp13_S_contig7385.18561.1 ID=prot_Ecto-sp13_S_contig7385.18561.1|Name=mRNA_Ecto-sp13_S_contig7385.18561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=223bp MRKSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALAback to top mRNA from alignment at Ecto-sp13_S_contig7385:6..3082- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7385.18561.1 ID=mRNA_Ecto-sp13_S_contig7385.18561.1|Name=mRNA_Ecto-sp13_S_contig7385.18561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3077bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7385:6..3082- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7385:6..3082- >mRNA_Ecto-sp13_S_contig7385.18561.1 ID=mRNA_Ecto-sp13_S_contig7385.18561.1|Name=mRNA_Ecto-sp13_S_contig7385.18561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7385:6..3082- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |