mRNA_Ecto-sp13_S_contig7385.18561.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7385.18561.1
Unique NamemRNA_Ecto-sp13_S_contig7385.18561.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: D8LTH1_ECTSI (Shikimate Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH1_ECTSI)

HSP 1 Score: 436 bits (1120), Expect = 2.420e-154
Identity = 220/223 (98.65%), Postives = 221/223 (99.10%), Query Frame = 1
Query:    1 MRKSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
            MR+SAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEE FRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLK EDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW
Sbjct:    1 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEGFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 223          
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A6H5JIK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK7_9PHAE)

HSP 1 Score: 434 bits (1115), Expect = 1.740e-152
Identity = 219/223 (98.21%), Postives = 221/223 (99.10%), Query Frame = 1
Query:    1 MRKSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
            MR+SAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDM+PKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLK EDGVDDITYNVVN ILEFIDSNPPKWQKWKEKANAAGIEW
Sbjct:   71 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMKPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNAILEFIDSNPPKWQKWKEKANAAGIEW 293          
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A835ZK89_9STRA (Shikimate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK89_9STRA)

HSP 1 Score: 251 bits (640), Expect = 3.910e-81
Identity = 125/214 (58.41%), Postives = 162/214 (75.70%), Query Frame = 1
Query:   46 LRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQA------DVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
            +RLQ AELGS+LRGTNV+FVGMMGTGK++VAR LAD MGRY F+DTD IIE+L+ A V +VF + GEE FR +E++VL+++HSYVK+ VATGGGIV E +NWGK+QTG+VVWLDM   DI +RLS + EEV+KR LL G D   KL+ + ++RK  Y QA      DV V +  +D VD +  + V+ + +FIDSNPPKWQ+WK+ A A+GI W
Sbjct:   18 IRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINW 231          
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A7R9UH62_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH62_9STRA)

HSP 1 Score: 207 bits (527), Expect = 9.590e-64
Identity = 108/205 (52.68%), Postives = 138/205 (67.32%), Query Frame = 1
Query:   16 GLSMEV-EPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKW 627
            GL  +V E   +  +   L SRL GT+++FVGMMGTGKST  R LA  +  Y FLDTDT+IE   G     +F K+GEE FR++ES V+DQ  +Y ++C+ATGGG V  N+NWGKMQTG+VVWL MEP++I ER S + EEV KRPLL G D   KL E+L+KRK +Y  ADV VQL   D V+++   V   I  F+D NPPK+
Sbjct:   38 GLRADVQEEKAVEDEFTRLASRLYGTSIYFVGMMGTGKSTTGRELAKKLPGYSFLDTDTVIEAYAGQDCSAIFEKEGEEGFRNIESMVMDQACAYRRLCIATGGGAVLRNQNWGKMQTGIVVWLQMEPEEIAERFSGNDEEVEKRPLLQGGDAVDKLREILDKRKEKYEVADVHVQLSPGDSVEEVVERVCGKIHRFMDENPPKF 242          
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A6U3Q8M5_9STRA (Shikimate kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q8M5_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.710e-63
Identity = 107/219 (48.86%), Postives = 153/219 (69.86%), Query Frame = 1
Query:   16 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAED-GVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
            G  M ++P      A  LG RL+G+N++FVGMMG+GKS V  A+A  MG Y FLDTDTIIE +  A++ E+FA++GE+ FR +ESQVLD VH++V+  V+TGGGIV +  NW K+Q+G+V+W+D+ P  I+ R+ KD ++   RPLL  D+P   LE+LLE+RKP+Y+QADV +++  E   ++D+   VV  +  FID NPP W+  K KA A G++W
Sbjct:   85 GEGMTIDP------ARLLGPRLQGSNLYFVGMMGSGKSAVGDAVARRMGSYNFLDTDTIIESVTNATITEIFAQEGEDTFRDIESQVLDSVHAHVRCVVSTGGGIVKKLSNWAKLQSGVVIWIDVPPSVIYNRI-KDKDD---RPLLQNDNPLETLEKLLEERKPRYSQADVRIEVNDESMSIEDVASKVVQDLHNFIDENPPAWKIAKAKAQAEGLDW 293          
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A7S1Z366_TRICV (Shikimate kinase n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z366_TRICV)

HSP 1 Score: 202 bits (514), Expect = 6.800e-61
Identity = 103/218 (47.25%), Postives = 147/218 (67.43%), Query Frame = 1
Query:   16 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
            G  M+++P      A  LG RL+G+N++F+GMMG+GKS V   +A  MG Y FLDTD+IIE+  G ++ E+F  +GEE FR VE Q+LD VH+YV+  V+TGGGIV   +NW K+QTG+VVWLD++P+ I +R+  D      RPLL  DDP  KL++LL +R+ +YAQAD+ +++  +   D +   V+  +  FID NPP W+K K KA A G++W
Sbjct:  112 GEGMKIDP------ARLLGPRLQGSNLYFIGMMGSGKSAVGDIVARRMGTYNFLDTDSIIEKATGMTIPEIFEAEGEEGFRQVEGQILDSVHAYVRCVVSTGGGIVCRLQNWAKLQTGLVVWLDVDPEVIIKRIEGD----ENRPLLQTDDPLKKLKDLLGEREERYAQADLRIEVTEDMDEDAVANMVIKELHYFIDENPPAWKKAKAKAQADGLDW 319          
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A7R9ZGS2_9STRA (Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGS2_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.580e-60
Identity = 102/218 (46.79%), Postives = 145/218 (66.51%), Query Frame = 1
Query:   16 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
            G  M+++P      A  LG RL+G+N++FVGMMG+GKS V   +A  MG Y FLDTD IIE+    S+ E+F  +GEE FR  E+QVLD VH+YV+  ++TGGG+V    NW K+QTG+V+WLD++P+ I +R+  D      RPLL  DDP  KL++LLE+R+ +Y+QADV +++  +   + +   VV  +  FID NPP W+K K KA A G++W
Sbjct:   87 GEGMKIDP------ARLLGPRLQGSNLYFVGMMGSGKSAVGDVVARRMGTYNFLDTDEIIEKATAMSIPEIFDAEGEEGFREAEAQVLDSVHAYVRCVISTGGGLVCRMGNWSKLQTGVVIWLDVDPELIIKRIEGD----TNRPLLQADDPLQKLKDLLEERREKYSQADVRIEVTEDMDENAVADLVVKELHNFIDENPPAWKKAKAKAQAEGLDW 294          
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: A0A7S1XQA2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQA2_9STRA)

HSP 1 Score: 197 bits (500), Expect = 8.010e-60
Identity = 101/209 (48.33%), Postives = 137/209 (65.55%), Query Frame = 1
Query:   25 MEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKAN 651
            +E EP     +   L  RL+G +++ VGMMGTGKST  + LA  MG Y FLDTDT+IE   G     +F ++GEEAFR +E+ V+DQ  +Y ++CVATGGG+V   KNW KMQTG+VVWL+M+P DI ERLS   +EV KRPLLA  DP  KL E+L++R+ +YA AD+T+ +        +   V + +  FID NPP++ +  E AN
Sbjct:   35 LEQEPD----EYVRLAERLQGASLYLVGMMGTGKSTAGKELAKRMGGYSFLDTDTVIEAYAGRDCATIFEEEGEEAFRDIETMVMDQACAYKRLCVATGGGMVLRTKNWSKMQTGIVVWLNMDPADIAERLSASSDEVTKRPLLAEADPAAKLTEILDERRDRYAIADITLDMTKXXXXXXVVRMVCSRVHSFIDKNPPRFTESSEYAN 239          
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: K0RFC3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RFC3_THAOC)

HSP 1 Score: 198 bits (503), Expect = 8.880e-60
Identity = 96/201 (47.76%), Postives = 141/201 (70.15%), Query Frame = 1
Query:   67 LGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
            L  RLRG N++ +GMMG+GKS V  ALA  MG Y FLDTD I+E  +G S+ E+F K+GE+AFR  E+QVLD VH++V+  + TGGG+V+ N+NW K+QTG+V++L  +P+ I++R+     E   RPLL  DDP   L++L E+R+ +Y QADVT++++    V+ +T   +  + +FID NPP W++ KEKA A G++W
Sbjct:   81 LSPRLRGCNLYLIGMMGSGKSAVGDALARRMGTYNFLDTDVILERAVGMSIPEIFEKEGEDAFRDAEAQVLDSVHAHVRCVIGTGGGLVTRNQNWAKLQTGLVLYLKTDPETIYKRI-----EGTDRPLLQTDDPLATLKDLTEERRGKYEQADVTIEVEDGMDVEAVTDMCIRMLHDFIDDNPPAWKQAKEKAQADGLDW 276          
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Match: K0SPY6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SPY6_THAOC)

HSP 1 Score: 198 bits (503), Expect = 9.990e-60
Identity = 96/201 (47.76%), Postives = 141/201 (70.15%), Query Frame = 1
Query:   67 LGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 669
            L  RLRG N++ +GMMG+GKS V  ALA  MG Y FLDTD I+E  +G S+ E+F K+GE+AFR  E+QVLD VH++V+  + TGGG+V+ N+NW K+QTG+V++L  +P+ I++R+     E   RPLL  DDP   L++L E+R+ +Y QADVT++++    V+ +T   +  + +FID NPP W++ KEKA A G++W
Sbjct:   85 LSPRLRGCNLYLIGMMGSGKSAVGDALARRMGTYNFLDTDVILERAVGMSIPEIFEKEGEDAFRDAEAQVLDSVHAHVRCVIGTGGGLVTRNQNWAKLQTGLVLYLKTDPETIYKRI-----EGTDRPLLQTDDPLATLKDLTEERRGKYEQADVTIEVEDGMDVEAVTDMCIRMLHDFIDDNPPAWKQAKEKAQADGLDW 280          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7385.18561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTH1_ECTSI2.420e-15498.65Shikimate Kinase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5JIK7_9PHAE1.740e-15298.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZK89_9STRA3.910e-8158.41Shikimate kinase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A7R9UH62_9STRA9.590e-6452.68Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U3Q8M5_9STRA1.710e-6348.86Shikimate kinase n=1 Tax=Ditylum brightwellii TaxI... [more]
A0A7S1Z366_TRICV6.800e-6147.25Shikimate kinase n=2 Tax=Trieres chinensis TaxID=1... [more]
A0A7R9ZGS2_9STRA2.580e-6046.79Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=... [more]
A0A7S1XQA2_9STRA8.010e-6048.33Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
K0RFC3_THAOC8.880e-6047.76Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
K0SPY6_THAOC9.990e-6047.76Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7385contigEcto-sp13_S_contig7385:6..3082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score439.1
Seed ortholog evalue1.2e-120
Seed eggNOG ortholog2880.D8LTH1
Preferred nameSK2
Model size669
KEGG rclassRC00002,RC00078
KEGG koko:K00891
KEGG ReactionR02412
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615
Exons5
EggNOG free text desc.shikimate metabolic process
EggNOG OGs2QTKR@2759,COG0703@1
Ec32 ortholog descriptionShikimate Kinase
Ec32 orthologEc-02_005600.1
EC2.7.1.71
Cds size669
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464007.185275-CDS-Ecto-sp13_S_contig7385:5..1521681464007.185275-CDS-Ecto-sp13_S_contig7385:5..152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7385 6..152 -
1681464007.1994343-CDS-Ecto-sp13_S_contig7385:904..10331681464007.1994343-CDS-Ecto-sp13_S_contig7385:904..1033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7385 905..1033 -
1681464007.2107487-CDS-Ecto-sp13_S_contig7385:1602..17101681464007.2107487-CDS-Ecto-sp13_S_contig7385:1602..1710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7385 1603..1710 -
1681464007.2218602-CDS-Ecto-sp13_S_contig7385:2143..23441681464007.2218602-CDS-Ecto-sp13_S_contig7385:2143..2344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7385 2144..2344 -
1681464007.2328947-CDS-Ecto-sp13_S_contig7385:2998..30821681464007.2328947-CDS-Ecto-sp13_S_contig7385:2998..3082Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7385 2999..3082 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7385.18561.1prot_Ecto-sp13_S_contig7385.18561.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7385 6..3082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7385.18561.1

>prot_Ecto-sp13_S_contig7385.18561.1 ID=prot_Ecto-sp13_S_contig7385.18561.1|Name=mRNA_Ecto-sp13_S_contig7385.18561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=223bp
MRKSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALA
DVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYV
KMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRP
LLAGDDPQGKLEELLEKRKPQYAQADVTVQLKAEDGVDDITYNVVNTILE
FIDSNPPKWQKWKEKANAAGIEW
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mRNA from alignment at Ecto-sp13_S_contig7385:6..3082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7385.18561.1 ID=mRNA_Ecto-sp13_S_contig7385.18561.1|Name=mRNA_Ecto-sp13_S_contig7385.18561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3077bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7385:6..3082- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGAAAAGTGCTGGGCTGAGCATGGAAGTGGAGCCTCATGTGCTGAG GCTTCAGGCTGCGGAACTTGGGTCGAGGCTTCGGGTAAGACTTGAACATG ACAATAAAAATGTTTATGGAAACAGGCAGCGAGGAAGGTGCTCTTCACAC CAACGTCAGCGGAGCATAGCAGCAGTTCGGCTGTTGGAGGACAACCGAAG CTGCTGCCAACGTATTAAGTGTCGGTATTCGTCATGGCCATTTCATAACG ACGTTTGAGCGTTGTGCATCTTGTAGGGCGTTTCGACTTTGGCAACCAGA CAACTCACGCATGGACTCCTTATGTACACTGCTGCTGTACAGCAGACCGC AGTAGTTCCACGTTCGGGCACACGCTTCCTTCAAACAAGTTCACCAGTCT ACAAAGGCAATCTATTGCTGTTCTACCCTTTACTTGACGAAACCACAGCG CCGCGATACAGCAGTGTCTCTCTGTGGAGAAGAAGTTGGAGCACGCAGCA TGAAAGGGGTTTGTCCCCTGGTTTCGCTTCGGCGACATACGACCTATGCA TTAGCTACTATGCGTAGAGTCGCACTGTCTTGCAAAGGGATGGTGTTCAA GCTTCTGCAACATCTCTTCGACCACGCTAACTCTTGTAGTGTTTGTTCCG GCCGTGGATACTCTTTGATCCTCCTTATGCAGGAACCCCAACACCCCCTC GCGTCCCGCCTTCTTGCTCTTCAATCTTTTCTTGGCAGGGCACAAACGTG TTTTTCGTTGGAATGATGGGCACGGGGAAGTCCACGGTCGCGCGCGCCCT GGCAGACGTGATGGGCAGGTACATCTTCTTGGACACCGACACCATCATCG AGGAGCTTCTGGGGGCGAGCGTAGGCGAGGTGTTTGCCAAGGATGGGGAG GAGGCCTTCCGGAGCGTGGAGAGCCAGGTCTTAGACCAGGTGATACGGTG GTGGGGCGGGCGTGGGCTGAGGCGGGGCTGGTCGAACTTGGTTGTTGCGT GCGCCGCTCGCGTGGTCTCAAGTTACAGGTCCTGCTTGAGGCGGAGCGCA GTCCTGTGGCGTGCGAAATTCGTTGCTTGCTTTCTGCGACGGATGATCGG TACGAAACACCATGTGGCGTCGCATGCCGAGCGGTTGCTATCCCTTCCGA GTTGCTCGTGCGAGGATAACGTAGGATAGGAACAACCCTTGGATATGCAC GAAGTATATACCAGCGGGATTTTTTTCTGAGCGACTCAAGTGGGTCTGCT AGTATGCATGAGAACTGCGACCCATGCCCACCCTCTTCGTATGTAGTTGT TCCATCCCCAAACATGAAGGCGTGAACTCTCTTGAATCTGTTTGGTACCG TCGTTGCTGGAATAATCGACAGGTGCACTCGTACGTCAAGATGTGCGTCG CCACGGGCGGGGGCATCGTGTCGGAGAACAAGAACTGGGGGAAGATGCAG ACCGGCATGGTGGTTTGGCTCGACATGGAGGTAAGAGCGAGAAAGAAGGG AAACGTACGTGCCTTTGTGCGTGTTGCTTGTTTCAAAGATTGTCGTAGTG CATCCACTCCTAGGTTTGGATCGAAGAAAACGTGCATCCGAAGGAGGGGC GAACGAAATCAACGTTGAGGGATGTGAAAACCGTATAGTCTTGATTTTTT TTGGTTGTGTGCGCTTGAAGACGCGAAAATTCTCCAGCGAGCGGAAATCC TGAGATTGTACGTGTGAATCCGACGGAAAGCCACAAAAAAGGCGGCACCA GAATTTGGGGGCCTCTCCGAACGATCACACTCCGGTGGTTTCCAGAGGCA TACTCCGAGTGCATTCTTTGCGCCGCCGTCGTTTCTGGCGCTCACTGTGG ACCATAGCAGTGCCACTGCGGCTGCCCTGCTTCGGTTGATGTCGTCTCTC ATGCTTTTATTGAACCATCTTCTTTTCGAACGGGGGGCAAATAAAAGAGT CGAAAGCCAAGGCTTCATTTCTATCAATGCTACATACCCTGTTGCAATTC GAAGACTCCCCTGTGATGCATTTGGATCGCTCTGCACACCTTGCCCCAGC CCAAGGATATATTCGAACGGTTGTCGAAAGATCCGGAGGAAGTGGCCAAG AGGCCGCTCCTGGCGGGAGACGACCCTCAGGGAAAGCTCGAGGAGCTGCT GGAGAAAAGGAAGCCCCAGTATGCGCAGGTACGGGTTAGGCTACACGGCG AGGCGTAGTTTACGTGCCACACGCCTCGTGAATGTTGTAAGGTTTTGATA AACAATTCAATGGCAGTGTCACGAGAGGTAGCGGTAGAGATGGCAGTGCC TCTGCTGGTTGGCGTGCATGAACGCTTGTGAGTGAACTGGCATACGATAG ATGACGTGTCCACCTGCATGATTAGAACTCTCGTTCTAGTCCCTGCACAC GTGAGCGAGTTTTGTTCGACCCGTGGTCTCAATACGAGTCCTTTATGTTA GGTTCATGGCATTGCTACCCGAGCAGAGCGGAAATGTACAGGTTGCAACC GTCTATAATTAATGCCGAGAGAAACATCACGCCCCCACCAAGCTGGTTTG CCGTGATATCAGCATATGAAGTTTTGTTTTTACAAGGTATCATGTAGACA TTTAAAAGCAATGGGCATACCCCTCTCCTGAAGCGGTCCGTCGACATCGC AGTGAAGCGTATGCATGGTGTGGTGCCCGAAGGGTATGCATGACGATTTC GTGGCTGCCCACTTCATCTGTTACATTAAACCGGCAAGATATTGGGGAAA AACCCAGGCTGCTGACCTCGTACAGCCATATCATCCAGCAAAGCACCTGC CGCAAACACAGACCACCTGTGATCCGCAAAGTCTCAATTGAACCAACCAT TCTATGTGATGTACACGCTCCTCGCCCCACCCCCACCGTATCCTGCTGTT TCACATGCTTGTCGCCCGTTTTGGCAACAGGCCGATGTGACCGTGCAGTT GAAAGCAGAAGACGGCGTCGACGATATCACTTACAACGTCGTCAACACCA TCCTCGAGTTCATTGACAGCAACCCTCCCAAGTGGCAGAAGTGGAAGGAA AAGGCGAACGCGGCAGGAATCGAATGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7385:6..3082-

>mRNA_Ecto-sp13_S_contig7385.18561.1 ID=mRNA_Ecto-sp13_S_contig7385.18561.1|Name=mRNA_Ecto-sp13_S_contig7385.18561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7385:6..3082- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGAAAAGTGCTGGGCTGAGCATGGAAGTGGAGCCTCATGTGCTGAG
GCTTCAGGCTGCGGAACTTGGGTCGAGGCTTCGGGGCACAAACGTGTTTT
TCGTTGGAATGATGGGCACGGGGAAGTCCACGGTCGCGCGCGCCCTGGCA
GACGTGATGGGCAGGTACATCTTCTTGGACACCGACACCATCATCGAGGA
GCTTCTGGGGGCGAGCGTAGGCGAGGTGTTTGCCAAGGATGGGGAGGAGG
CCTTCCGGAGCGTGGAGAGCCAGGTCTTAGACCAGGTGCACTCGTACGTC
AAGATGTGCGTCGCCACGGGCGGGGGCATCGTGTCGGAGAACAAGAACTG
GGGGAAGATGCAGACCGGCATGGTGGTTTGGCTCGACATGGAGCCCAAGG
ATATATTCGAACGGTTGTCGAAAGATCCGGAGGAAGTGGCCAAGAGGCCG
CTCCTGGCGGGAGACGACCCTCAGGGAAAGCTCGAGGAGCTGCTGGAGAA
AAGGAAGCCCCAGTATGCGCAGGCCGATGTGACCGTGCAGTTGAAAGCAG
AAGACGGCGTCGACGATATCACTTACAACGTCGTCAACACCATCCTCGAG
TTCATTGACAGCAACCCTCCCAAGTGGCAGAAGTGGAAGGAAAAGGCGAA
CGCGGCAGGAATCGAATGG
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