mRNA_Ecto-sp13_S_contig7339.18502.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7339.18502.1
Unique NamemRNA_Ecto-sp13_S_contig7339.18502.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7339.18502.1 vs. uniprot
Match: A0A835YQE8_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQE8_9STRA)

HSP 1 Score: 135 bits (339), Expect = 6.760e-34
Identity = 67/135 (49.63%), Postives = 94/135 (69.63%), Query Frame = 1 
Query:   28 VQNQFAVVLSWDEVRALQKLYGDPDSESIDFMKFAVALGKSPGHGPDKSRRAYNFLPKHTTEYDLKAIEKKIMHKLEDRCEVAGNYQYQWARRMLCDSTSTLAGGMDKEQLKLRLSGLLGVELSDGEMDVLFRKY 432
            V++QFA+ L+ +E+ ALQ  Y      ++DF++FA AL K+P +G D++R  +NFLP      DL+ +E+ +  K+ DR  +AGNYQYQ A RMLCD+   LAGGM +E LKLR+S LLGVE++D E+D LF KY
Sbjct:    2 VESQFALALTVEEMVALQTRYPGNQPGTVDFLQFAEALSKTPQYGLDRTRGCFNFLPASKGNRDLQGLERDMRQKITDRLHLAGNYQYQSAYRMLCDANYQLAGGMGREDLKLRVSELLGVEINDREVDALFSKY 136
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7339.18502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQE8_9STRA6.760e-3449.63EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7339contigEcto-sp13_S_contig7339:33..1663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size444
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_004420.1
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464002.0699422-CDS-Ecto-sp13_S_contig7339:32..1321681464002.0699422-CDS-Ecto-sp13_S_contig7339:32..132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7339 33..132 +
1681464002.082366-CDS-Ecto-sp13_S_contig7339:977..11471681464002.082366-CDS-Ecto-sp13_S_contig7339:977..1147Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7339 978..1147 +
1681464002.093565-CDS-Ecto-sp13_S_contig7339:1489..16631681464002.093565-CDS-Ecto-sp13_S_contig7339:1489..1663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7339 1490..1663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7339.18502.1prot_Ecto-sp13_S_contig7339.18502.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7339 33..1663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7339.18502.1

>prot_Ecto-sp13_S_contig7339.18502.1 ID=prot_Ecto-sp13_S_contig7339.18502.1|Name=mRNA_Ecto-sp13_S_contig7339.18502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MSMDEFKRQVQNQFAVVLSWDEVRALQKLYGDPDSESIDFMKFAVALGKS
PGHGPDKSRRAYNFLPKHTTEYDLKAIEKKIMHKLEDRCEVAGNYQYQWA
RRMLCDSTSTLAGGMDKEQLKLRLSGLLGVELSDGEMDVLFRKYADP*
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mRNA from alignment at Ecto-sp13_S_contig7339:33..1663+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7339.18502.1 ID=mRNA_Ecto-sp13_S_contig7339.18502.1|Name=mRNA_Ecto-sp13_S_contig7339.18502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1631bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7339:33..1663+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAATGGACGAGTTCAAACGGCAGGTCCAAAACCAGTTCGCTGTAGT
GCTTAGCTGGGATGAAGTGCGCGCGCTGCAGAAGCTCTACGGGGACCCAG
GTAAGATCATTATTTTGGATATGGGCCTACGGTCAACGTGTCAGCCGTGG
GTGTTCCTCCTGGCGGCATGATGGAAAGCGTTTCGAGGGCATGCCTTTGT
AACCTCTTGGACTTTTCCCGATCAGACTCCACGTCGCGAGCAATGGATAA
AACGTATGGGTTATTGCACTTCTTTCTATGGTGACAACCTGTAGGATTTG
CACAGACACAGCTCAGCGGTGGCCAACTTCCTTTCCAGAGCGATTCACCA
TAAACGTGCTTCAAACACCTCTTTCCAGAAGGGGCCTAGACTAACCGATG
CCAATCTTGCACACCCGGTGAAAACTCGAAAGGTGCACAAGTACGTGTGT
GAAACAAGAAAGGGGGAGAGAATCCCTGCGGCGTTTTGGTTCGACATGAA
CCCGAACATGATACCACGTAAATAGACAAGCACTATTCTCGCCGAACGAG
GAACCAACAATAAAACTGCGTTCACAGGTACAAAATCTTCACTCCGTGGT
CACTATGTTTGTTGCTCGACTGCAGCCAGTCCCCCACCTCAGCAGAACCC
CCAGACCCTCACACTTGCGTTGACAACTTATGCTACGCGCCAATAATATT
TTCAACAAACCCATCACCCTGGGGGCACGACTCAAGAGATCGTGGGCACA
TAACAGAAGAAGAGACGGGGGTATACCAGGGGTTGCTCAAAGTACTGGGA
ACACAATCGGCCCAAAGTTGTCTTCGGTGGTAACTCCACCACAGCAGTAC
ACTCTCGGCAATCCGCCGTGATACGAAGTCAATCCTCGAAGTAATCCACA
TGCACGGATTGGTTGAACCGTTCTTGGCCATCTTCCCGAGGGCAGATTCT
GAAAGTATCGACTTCATGAAGTTCGCCGTCGCACTGGGGAAGTCGCCGGG
ACACGGGCCGGACAAGTCCAGGCGCGCCTACAACTTTCTCCCTAAGCACA
CCACTGAGTACGACCTGAAAGCCATCGAGAAGAAGATCATGCATAAGCTC
GAGGATCGCTGCGAGGTACGTAACGTTGATGCGTGTCTGTCTCTGTTTGC
CTGTCTCTGTCTGTCTGCCTCTTTCTTCTGTCTCTGTCTCCTTTTTGTCT
CTCCCTCTGTACGTCTGGCTTGCCTGTCTGTCTGTCTGCCTAATTGTCTG
TTTCTCTCTCGTTCTCTTTGTCCGTCCGTCGTCGTACTCTCCTCCATCGG
TTACAGAGCAACGGATACATCATGACCCATATCCCTAAGAATACCGGTCG
AACGGCGAGAGCCCGTGGGACTGCATTGACTCGCTGAGTACTGAATGGGT
CTATGATTGTGACCCACGTAATCGCGGTTTCCGCATCCCCATTGGAAACG
ACTGCAGGTTGCGGGAAACTATCAGTATCAATGGGCCAGGCGCATGCTTT
GCGACTCGACCTCTACGCTGGCTGGTGGTATGGACAAGGAGCAACTCAAG
CTGCGGCTTAGTGGGTTGCTGGGGGTTGAGCTTAGCGACGGGGAAATGGA
CGTGCTTTTTCGCAAATACGCCGACCCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7339:33..1663+

>mRNA_Ecto-sp13_S_contig7339.18502.1 ID=mRNA_Ecto-sp13_S_contig7339.18502.1|Name=mRNA_Ecto-sp13_S_contig7339.18502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7339:33..1663+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAATGGACGAGTTCAAACGGCAGGTCCAAAACCAGTTCGCTGTAGT
GCTTAGCTGGGATGAAGTGCGCGCGCTGCAGAAGCTCTACGGGGACCCAG
ATTCTGAAAGTATCGACTTCATGAAGTTCGCCGTCGCACTGGGGAAGTCG
CCGGGACACGGGCCGGACAAGTCCAGGCGCGCCTACAACTTTCTCCCTAA
GCACACCACTGAGTACGACCTGAAAGCCATCGAGAAGAAGATCATGCATA
AGCTCGAGGATCGCTGCGAGGTTGCGGGAAACTATCAGTATCAATGGGCC
AGGCGCATGCTTTGCGACTCGACCTCTACGCTGGCTGGTGGTATGGACAA
GGAGCAACTCAAGCTGCGGCTTAGTGGGTTGCTGGGGGTTGAGCTTAGCG
ACGGGGAAATGGACGTGCTTTTTCGCAAATACGCCGACCCGTAA
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