mRNA_Ecto-sp13_S_contig73251.18492.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73251.18492.1
Unique NamemRNA_Ecto-sp13_S_contig73251.18492.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig73251.18492.1 vs. uniprot
Match: D8LP74_ECTSI (EsV-1-41 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP74_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 3.440e-79
Identity = 125/156 (80.13%), Postives = 130/156 (83.33%), Query Frame = 1 
Query:   16 IYESLCETSASFSDVSESNINMVRCPFYEKPVDEIQRVQRAKCGKRSQKHRSTAQSRLGDMTVGDIRYCFQQLRNAGKDLGPDMMLYNGQSAGEFALKYLRETSTATRKRRKILSMVTIRSVSDKKGGDGRRGTDNAFSVSGCTPSRDSGLNVLEF 483
            IY SLCET A  SDV E NINM RCPFYEKPVDEIQ  Q AK  KRSQ+HRSTAQSRLGDMTVGDIRYCFQQLRNAGKDL PDMMLYNGQSAGEFALKYLRETSTATRKRRK LS+V  RSV++KK   GRRG DNA S+ GCT  R  GLNVLEF
Sbjct:   10 IYTSLCETPAHSSDVGEPNINMARCPFYEKPVDEIQSTQSAKYAKRSQRHRSTAQSRLGDMTVGDIRYCFQQLRNAGKDLSPDMMLYNGQSAGEFALKYLRETSTATRKRRKSLSVVARRSVANKKDSGGRRGKDNALSMDGCTSRRAPGLNVLEF 165
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BLAST of mRNA_Ecto-sp13_S_contig73251.18492.1 vs. uniprot
Match: Q8QNM3_ESV1K (EsV-1-41 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM3_ESV1K)

HSP 1 Score: 231 bits (590), Expect = 1.190e-75
Identity = 126/165 (76.36%), Postives = 133/165 (80.61%), Query Frame = 1 
Query:    4 MNDD-----IYESLCETSASFSDVSESNINMVRCPFYEKPVDEIQRVQRAKCGKRSQKHRSTAQSRLGDMTVGDIRYCFQQLRNAGKDLGPDMMLYNGQSAGEFALKYLRETSTATRKRRKILSMVTIRSVSDKKGGDGRRGTDNAFSVSGCTPSRDSGLNVLEF 483
            MNDD     IY+SLCETS   SDVSE +INMVRCPFYEKPVDEIQ +Q AK  KRSQ+HRSTAQSRLGDMTVGDIRYCFQQLRNAGKDL PDMMLYNGQSAGEFALKYLRETSTATRKRRK  SMV  RSV+++K        D AFSV GCT    SGLNVLEF
Sbjct:    1 MNDDTLEKNIYKSLCETSTPSSDVSEPSINMVRCPFYEKPVDEIQSIQSAKYAKRSQRHRSTAQSRLGDMTVGDIRYCFQQLRNAGKDLSPDMMLYNGQSAGEFALKYLRETSTATRKRRKSSSMVASRSVANRK--------DTAFSVDGCTSIGASGLNVLEF 157
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BLAST of mRNA_Ecto-sp13_S_contig73251.18492.1 vs. uniprot
Match: Q6XM45_9PHYC (FirrV-1-A42 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM45_9PHYC)

HSP 1 Score: 100 bits (249), Expect = 3.040e-24
Identity = 58/110 (52.73%), Postives = 74/110 (67.27%), Query Frame = 1 
Query:   76 NMVRCPFYEKPVDEIQRVQRAKCGKRSQKHRSTAQSRLGDMTVGDIRYCFQQLRNAGKDLGPDMMLYNGQSAGEFALKYLRETSTATRKRRKILSMVTIRSVSDKKGGDG 405
            N VR PF E  +  +   +  K  KR+Q++RSTA+SR+  MTVGDIRYCFQQLRNA  DL PD +LYNGQ AGEFAL YL ETS + +K+R+ +        S ++ GDG
Sbjct:    4 NKVRYPFTETHLTHLTSTK--KKNKRTQRYRSTAKSRICGMTVGDIRYCFQQLRNANADLCPDFVLYNGQCAGEFALSYLIETSNSMKKKRQHVE------ESSQQSGDG 105
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BLAST of mRNA_Ecto-sp13_S_contig73251.18492.1 vs. uniprot
Match: B5LWK5_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK5_9PHYC)

HSP 1 Score: 95.9 bits (237), Expect = 2.000e-22
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:   82 VRCPFYEKPVDEIQRVQRAKCGKRSQKHRSTAQSRLGDMTVGDIRYCFQQLRNAGKDLGPDMMLYNGQSAGEFALKYLRETSTATRKRR 348
            VR PF E P   +      K  KR+Q++RSTA+SR+  MTVGDIRYCFQQLRNAG  L P+ +LYNGQ AGEFAL YL ETS + ++++
Sbjct:   10 VRDPFAENPYRPL-----VKKTKRTQRYRSTAKSRICGMTVGDIRYCFQQLRNAGNQLCPEFVLYNGQCAGEFALSYLIETSNSMKRKK 93
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BLAST of mRNA_Ecto-sp13_S_contig73251.18492.1 vs. uniprot
Match: A0A835Z8A2_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A2_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 8.430e-7
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:  166 RSTAQSRLGDMTVGDIRYCFQQLRNAGKDLGPDMMLYNGQSAGEFALKYLRETS 327
            +S  +SR+G +TVGD+RY F QLR    D+ P+  L+ G+SAG F+L YL +++
Sbjct:   33 KSATRSRIGTLTVGDVRYIFTQLRGYS-DINPNRTLWTGESAGSFSLNYLLQSN 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73251.18492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LP74_ECTSI3.440e-7980.13EsV-1-41 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNM3_ESV1K1.190e-7576.36EsV-1-41 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
Q6XM45_9PHYC3.040e-2452.73FirrV-1-A42 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWK5_9PHYC2.000e-2257.30Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A835Z8A2_9STRA8.430e-746.30Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73251contigEcto-sp13_S_contig73251:13..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size486
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-41
Ec32 orthologEc-06_006380.1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464001.1430383-CDS-Ecto-sp13_S_contig73251:12..4951681464001.1430383-CDS-Ecto-sp13_S_contig73251:12..495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73251 13..495 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464001.1559646-UTR-Ecto-sp13_S_contig73251:495..4981681464001.1559646-UTR-Ecto-sp13_S_contig73251:495..498Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig73251 496..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73251.18492.1prot_Ecto-sp13_S_contig73251.18492.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73251 13..495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73251.18492.1

>prot_Ecto-sp13_S_contig73251.18492.1 ID=prot_Ecto-sp13_S_contig73251.18492.1|Name=mRNA_Ecto-sp13_S_contig73251.18492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MNDDIYESLCETSASFSDVSESNINMVRCPFYEKPVDEIQRVQRAKCGKR
SQKHRSTAQSRLGDMTVGDIRYCFQQLRNAGKDLGPDMMLYNGQSAGEFA
LKYLRETSTATRKRRKILSMVTIRSVSDKKGGDGRRGTDNAFSVSGCTPS
RDSGLNVLEF*
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mRNA from alignment at Ecto-sp13_S_contig73251:13..498-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73251.18492.1 ID=mRNA_Ecto-sp13_S_contig73251.18492.1|Name=mRNA_Ecto-sp13_S_contig73251.18492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73251:13..498- (Ectocarpus species13 EcNAP12_S_4_19m)
TCAATGAACGACGACATTTACGAATCTCTGTGCGAAACATCGGCGTCTTT
TTCCGACGTTAGCGAGTCAAACATAAACATGGTGAGGTGTCCCTTTTACG
AAAAGCCCGTCGATGAAATCCAGCGTGTTCAGAGAGCGAAGTGTGGCAAG
CGCTCACAGAAACACAGGTCGACGGCGCAGTCGCGTCTGGGAGACATGAC
GGTCGGGGACATTAGATACTGCTTTCAACAATTGCGTAATGCTGGCAAAG
ATCTAGGTCCAGATATGATGCTTTACAACGGCCAGTCCGCAGGCGAGTTT
GCCCTCAAGTATTTGAGAGAGACATCTACGGCAACAAGGAAACGAAGAAA
AATCTTGTCGATGGTTACTATTCGTTCTGTCTCCGATAAAAAGGGCGGAG
ATGGTCGGAGAGGAACGGACAACGCATTTAGTGTGAGTGGGTGCACGCCT
AGCAGAGATTCCGGCTTGAACGTCCTCGAGTTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73251:13..498-

>mRNA_Ecto-sp13_S_contig73251.18492.1 ID=mRNA_Ecto-sp13_S_contig73251.18492.1|Name=mRNA_Ecto-sp13_S_contig73251.18492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73251:13..498- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGACGACATTTACGAATCTCTGTGCGAAACATCGGCGTCTTTTTC
CGACGTTAGCGAGTCAAACATAAACATGGTGAGGTGTCCCTTTTACGAAA
AGCCCGTCGATGAAATCCAGCGTGTTCAGAGAGCGAAGTGTGGCAAGCGC
TCACAGAAACACAGGTCGACGGCGCAGTCGCGTCTGGGAGACATGACGGT
CGGGGACATTAGATACTGCTTTCAACAATTGCGTAATGCTGGCAAAGATC
TAGGTCCAGATATGATGCTTTACAACGGCCAGTCCGCAGGCGAGTTTGCC
CTCAAGTATTTGAGAGAGACATCTACGGCAACAAGGAAACGAAGAAAAAT
CTTGTCGATGGTTACTATTCGTTCTGTCTCCGATAAAAAGGGCGGAGATG
GTCGGAGAGGAACGGACAACGCATTTAGTGTGAGTGGGTGCACGCCTAGC
AGAGATTCCGGCTTGAACGTCCTCGAGTTTTAA
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