mRNA_Ecto-sp13_S_contig731.18472.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig731.18472.1
Unique NamemRNA_Ecto-sp13_S_contig731.18472.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig731.18472.1 vs. uniprot
Match: A0A6H5KMS3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMS3_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.100e-71
Identity = 144/180 (80.00%), Postives = 145/180 (80.56%), Query Frame = 3 
Query:   69 MKCTTFLLSASIVTLSPSRDG-ALGFVLGPGLAMRRGNPTTTHDRRLMCHHHGLARPSSSGSIYD-RTSGGARRKTIPRALGG-SSPSDGADDDSIGGXXSSVGDGAGGLSGDGERATGE-EEAEQQSLASLVESTFVLAAAGNSYEMGLKAFISTIKEAYERGYTVPALTMEVSFVPTK 596
            MKC TFLLSASIVTLSPSRDG ALGFVLGPGLAMRRG PTTTHDRR MCHHHGLA PSSSGSI D RTSGGAR +TIPRALGG SSPSDGADD     XX                     EEAEQQSLASLVESTFVLAAAGNSYEMGLKAFISTIKEAYERGYTVPALTMEVSFVPTK
Sbjct:    1 MKCVTFLLSASIVTLSPSRDGGALGFVLGPGLAMRRGKPTTTHDRRRMCHHHGLASPSSSGSICDSRTSGGARWRTIPRALGGTSSPSDGADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAEQQSLASLVESTFVLAAAGNSYEMGLKAFISTIKEAYERGYTVPALTMEVSFVPTK 180
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BLAST of mRNA_Ecto-sp13_S_contig731.18472.1 vs. uniprot
Match: A0A836CF30_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF30_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 9.760e-5
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:  384 GLSGDGERATGEEEAEQQS----LASLVESTFVLAAAGNSYEMGLKAFISTIKEAYERGYTVPALTMEV 578
            GLSG+   ++G  E+  QS    LAS+VE +FV+A +   Y  GL+AFIS I +AYE G+ VP L+ME+
Sbjct:   52 GLSGELSDSSGGGESSPQSSAADLASIVERSFVVACSEGDYTRGLQAFISAIMKAYESGFAVPTLSMEI 120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig731.18472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMS3_9PHAE1.100e-7180.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CF30_9STRA9.760e-547.83Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig731contigEcto-sp13_S_contig731:4068..6148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1008
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_001680.1
Cds size909
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463999.0605698-UTR-Ecto-sp13_S_contig731:4067..40981681463999.0605698-UTR-Ecto-sp13_S_contig731:4067..4098Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig731 4068..4098 -
1681463999.1047332-UTR-Ecto-sp13_S_contig731:6080..61481681463999.1047332-UTR-Ecto-sp13_S_contig731:6080..6148Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig731 6081..6148 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463999.0729585-CDS-Ecto-sp13_S_contig731:4098..46731681463999.0729585-CDS-Ecto-sp13_S_contig731:4098..4673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig731 4099..4673 -
1681463999.0838244-CDS-Ecto-sp13_S_contig731:4995..51351681463999.0838244-CDS-Ecto-sp13_S_contig731:4995..5135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig731 4996..5135 -
1681463999.0943081-CDS-Ecto-sp13_S_contig731:5886..60801681463999.0943081-CDS-Ecto-sp13_S_contig731:5886..6080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig731 5887..6080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig731.18472.1prot_Ecto-sp13_S_contig731.18472.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig731 4099..6080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig731.18472.1

>prot_Ecto-sp13_S_contig731.18472.1 ID=prot_Ecto-sp13_S_contig731.18472.1|Name=mRNA_Ecto-sp13_S_contig731.18472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=303bp
MKCTTFLLSASIVTLSPSRDGALGFVLGPGLAMRRGNPTTTHDRRLMCHH
HGLARPSSSGSIYDRTSGGARRKTIPRALGGSSPSDGADDDSIGGSSSSV
GDGAGGLSGDGERATGEEEAEQQSLASLVESTFVLAAAGNSYEMGLKAFI
STIKEAYERGYTVPALTMEVSFVPTKVVLAYNCCPVSSPSHPCSSVSFVF
LLSTRSSYLSMVSPTSIDLSRLREIRCWLAMLHGTLFPCLLISIQGSGVL
TSSPWSLICAPEYIAFFSLVSLFEALDFCGVAQGCRRDEELTAAPTRNSV
VV*
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mRNA from alignment at Ecto-sp13_S_contig731:4068..6148-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig731.18472.1 ID=mRNA_Ecto-sp13_S_contig731.18472.1|Name=mRNA_Ecto-sp13_S_contig731.18472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2081bp|location=Sequence derived from alignment at Ecto-sp13_S_contig731:4068..6148- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGCAATCCGCCAACCTGCTGCAATCCTGCTCTGTACTAGCTAATACT
GCTGAGAGAAGAAATCTAATGAAGTGCACCACGTTCCTCTTGTCCGCCTC
CATCGTGACTCTCTCCCCATCGCGAGATGGTGCGTTGGGGTTTGTTTTAG
GACCTGGACTAGCGATGAGGCGGGGTAACCCGACGACGACACACGATCGG
CGGCTCATGTGTCATCATCATGGACTTGCACGTCCCTCCAGCAGCGGCAG
CATCTACGATAGGTGAGGGCGTCTCGCTACTTCTGCTCCTCGGCTCGTTG
TATTGATCGTGTGTCGTACATTCACCATTGGTTCCTCAATACTGCAAGGA
CGATGGAGGCTGTGGACACCTGATTGGAATCATGTCTCCTCGAAGGTTTC
TGAATGAATACGCGGCAAAGCACAACACCACGCTACTTCGATGCAGCTGT
AGGCAGTCATCAAGCTCTTGCATGTGGGCCTACATACCTCCATCCCCACG
AGCCTGTCAGTGTACGCAACAGTGTCCTTACGACCATCTCCGAGCAATCG
GCAGCATTGTACTGCTCTAAATGTCAATGTGTTTCGACGAGAGTGTTTCG
ACGAGAGCACACAAAATCGCAGGCCAAACGATGTACTAGACTACTGCTGT
ACGGCTGTACCATGCACTACTCATAGGGGAGATCGCTGTATGTTGCTTTG
GGACCCGTTGAAATGTAAGCTGGTCACAACACTAACTCATTACCTATCTG
TCACGGACTCCTAGTCTGGCAGAGATTCGACTGGTTGTGTGTTCGTGTAA
GAAAAAAGTACCAAATGTAGGCGTTGTTGCTGCGAACCCAAGCATCAGTA
CTCAACACCGACGGCAGCGTGCTCTACAGCAGCGGTACCACGGGCTCGTC
TCCTCCGTGTAGACAACACCATCCCACGAGCGACGAGGGGCACTTACGAC
ACACCTTCTTTGACATACCATGTGTTTGATTCGGCCACCATCACAACCAC
CAACCCGTAGCAGAACTTCGGGTGGAGCACGTCGGAAAACAATTCCCCGA
GCGCTCGGGGGGAGTTCACCTAGCGATGGCGCTGACGATGACAGTATCGG
CGGAAGCAGCAGCAGCGTTGGGGACGGCGCGGGTGGTCTATCGGGCGACG
GAGGTATGTGTTCTGTGTTGTTGTTGTTGTTGTTTTGGCTGTTGCTGCCT
TGGCTTAGAGAATCGCCTTGGACTATCTGACTCCTTGTGTTTGTTGCACG
TGGTTTGTTGAGGGGTGCTCTTCAAAGGCGAGCAATACAGCATCCAACAA
TGGTGTATTTTGAGGTTCTTGTGCCGGCTTTTCGGAGCCGAATGCTTTCG
TCGGGTGGCAGTAGCGAAAACATTGTGATCCCGCCCCGTGTTGATGTCAA
CATGCCACCGTCGATTGCCATCTGGTCATACCGGTTTGTTGCGTTTACCT
GCCATGGCCGTTCGATGACAAGCAGAAAGAGCGACAGGAGAAGAGGAAGC
AGAGCAGCAATCCTTAGCTAGTCTGGTGGAGTCCACCTTCGTGCTGGCGG
CAGCGGGGAACAGCTACGAGATGGGCCTCAAAGCCTTCATTTCGACGATC
AAGGAGGCGTACGAGAGGGGGTACACGGTCCCGGCCTTGACAATGGAGGT
CTCCTTCGTTCCTACAAAGGTCGTCCTGGCTTACAATTGCTGCCCGGTCT
CGTCCCCGTCTCACCCTTGCTCGAGTGTTTCGTTTGTGTTTTTGTTGTCC
ACCCGGTCCTCCTACTTGTCGATGGTATCACCAACTTCAATTGACTTATC
GCGACTACGCGAAATTCGCTGCTGGTTGGCCATGCTCCATGGTACGCTCT
TTCCATGTCTACTTATTTCGATTCAAGGCTCTGGGGTTTTGACCTCGTCT
CCGTGGAGTTTAATCTGTGCTCCTGAGTATATCGCTTTCTTTTCGTTGGT
GTCCTTGTTCGAGGCCTTGGACTTTTGTGGCGTAGCCCAAGGTTGCCGGA
GAGATGAAGAGTTGACAGCAGCACCGACAAGGAATTCGGTTGTTGTATAG
ACCTCATGTTGGTTTTTCAGAACTCAAGCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig731:4068..6148-

>mRNA_Ecto-sp13_S_contig731.18472.1 ID=mRNA_Ecto-sp13_S_contig731.18472.1|Name=mRNA_Ecto-sp13_S_contig731.18472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig731:4068..6148- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTGCACCACGTTCCTCTTGTCCGCCTCCATCGTGACTCTCTCCCC
ATCGCGAGATGGTGCGTTGGGGTTTGTTTTAGGACCTGGACTAGCGATGA
GGCGGGGTAACCCGACGACGACACACGATCGGCGGCTCATGTGTCATCAT
CATGGACTTGCACGTCCCTCCAGCAGCGGCAGCATCTACGATAGAACTTC
GGGTGGAGCACGTCGGAAAACAATTCCCCGAGCGCTCGGGGGGAGTTCAC
CTAGCGATGGCGCTGACGATGACAGTATCGGCGGAAGCAGCAGCAGCGTT
GGGGACGGCGCGGGTGGTCTATCGGGCGACGGAGAAAGAGCGACAGGAGA
AGAGGAAGCAGAGCAGCAATCCTTAGCTAGTCTGGTGGAGTCCACCTTCG
TGCTGGCGGCAGCGGGGAACAGCTACGAGATGGGCCTCAAAGCCTTCATT
TCGACGATCAAGGAGGCGTACGAGAGGGGGTACACGGTCCCGGCCTTGAC
AATGGAGGTCTCCTTCGTTCCTACAAAGGTCGTCCTGGCTTACAATTGCT
GCCCGGTCTCGTCCCCGTCTCACCCTTGCTCGAGTGTTTCGTTTGTGTTT
TTGTTGTCCACCCGGTCCTCCTACTTGTCGATGGTATCACCAACTTCAAT
TGACTTATCGCGACTACGCGAAATTCGCTGCTGGTTGGCCATGCTCCATG
GTACGCTCTTTCCATGTCTACTTATTTCGATTCAAGGCTCTGGGGTTTTG
ACCTCGTCTCCGTGGAGTTTAATCTGTGCTCCTGAGTATATCGCTTTCTT
TTCGTTGGTGTCCTTGTTCGAGGCCTTGGACTTTTGTGGCGTAGCCCAAG
GTTGCCGGAGAGATGAAGAGTTGACAGCAGCACCGACAAGGAATTCGGTT
GTTGTATAG
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