mRNA_Ecto-sp13_S_contig7306.18468.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7306.18468.1
Unique NamemRNA_Ecto-sp13_S_contig7306.18468.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7306.18468.1 vs. uniprot
Match: A0A6H5KW93_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW93_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 3.180e-46
Identity = 133/248 (53.63%), Postives = 135/248 (54.44%), Query Frame = 1 
Query:    1 QAPANHAKLSGGTHKKYVKVGGPTTVASRSFMHNNA--------------------------------------------------------AIGG------------------------------------------------AAGAGDNSVFDRLPYSYTESERKRRQPEAAPAPPAIPASSNPGTGRQPFSTRRSSQDKEAVAVSXXXXXXXXXXXGGPQNPLLPSRRSVELENGGGRSDERGGR 432
            QAPANHAKLSGGTHKKYVKVGGPTTVASR FM  +A                                                         +GG                                                AAGAGDNSVFDRLPYSYTESERKRRQPEAAPAPPAIPASSNP TGRQPFS RRSSQDKEAVAVS XXXXXXXXX GGPQNPLLPSRRSVELE GGGRSDERGGR
Sbjct: 1823 QAPANHAKLSGGTHKKYVKVGGPTTVASRLFMQQHAEXXXXXXXXXXXXXSSNSGSPPRAMSATSGSQAGSDEKDRSVNSDDALGVVDEEGLGLGGRRDREKKQFGTSIHRDSGAAAHATGQRGSYTGASGSGXXXXXXXXXXXAAGAGDNSVFDRLPYSYTESERKRRQPEAAPAPPAIPASSNPSTGRQPFSIRRSSQDKEAVAVSAXXXXXXXXX-GGPQNPLLPSRRSVELEPGGGRSDERGGR 2069
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BLAST of mRNA_Ecto-sp13_S_contig7306.18468.1 vs. uniprot
Match: D8LNZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ6_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 9.700e-23
Identity = 93/244 (38.11%), Postives = 97/244 (39.75%), Query Frame = 1 
Query:    1 QAPANHAKLSGGTHKKYVKVGGPTTVASRSFMHNNA------------------------------------------------------AIG-------------------------------GAAGA---------------GDNSVFDRLPYSYTESERKRRQPEAAPAPPAIPASSNPGTGRQPFSTRRSSQDKEAVAVSXXXXXXXXXXXGGPQNPLLPSRRSVELENGGGRSDERGGR 432
            QAPANHAKLSGGTHKKYVKVGGPTTVASRSFM  +A                                                      A+G                               GA+G                GDNSVF+RLPYSYTESERKRRQPEAAPAPPAIPASSNP T                                           SVELENGGGRSDERGGR
Sbjct:  728 QAPANHAKLSGGTHKKYVKVGGPTTVASRSFMQQHAEAXXXXXXXXXXXASSNSGSPPRAMSATSGSQAGSDEKDRSVNSDEALGVVDEEALGLGGRRDREKKQLGTRDSGATAHAAGQRGSYTGASGXXXXXXXXXXXXXXXXGDNSVFNRLPYSYTESERKRRQPEAAPAPPAIPASSNPSTS------------------------------------------SVELENGGGRSDERGGR 929
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7306.18468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW93_9PHAE3.180e-4653.63Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D8LNZ6_ECTSI9.700e-2338.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7306contigEcto-sp13_S_contig7306:2144..5212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1912
Hectar predicted targeting categoryother localisation
Exons2
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463998.6396785-UTR-Ecto-sp13_S_contig7306:2143..22361681463998.6396785-UTR-Ecto-sp13_S_contig7306:2143..2236Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7306 2144..2236 +
1681463998.6765249-UTR-Ecto-sp13_S_contig7306:3735..52121681463998.6765249-UTR-Ecto-sp13_S_contig7306:3735..5212Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7306 3736..5212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463998.651506-CDS-Ecto-sp13_S_contig7306:2236..22411681463998.651506-CDS-Ecto-sp13_S_contig7306:2236..2241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7306 2237..2241 +
1681463998.6642053-CDS-Ecto-sp13_S_contig7306:3398..37351681463998.6642053-CDS-Ecto-sp13_S_contig7306:3398..3735Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7306 3399..3735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7306.18468.1prot_Ecto-sp13_S_contig7306.18468.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7306 2237..3735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7306.18468.1

>prot_Ecto-sp13_S_contig7306.18468.1 ID=prot_Ecto-sp13_S_contig7306.18468.1|Name=mRNA_Ecto-sp13_S_contig7306.18468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MHNNAAIGGAAGAGDNSVFDRLPYSYTESERKRRQPEAAPAPPAIPASSN
PGTGRQPFSTRRSSQDKEAVAVSAAAAAAAATAAGGPQNPLLPSRRSVEL
ENGGGRSDERGGR*
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mRNA from alignment at Ecto-sp13_S_contig7306:2144..5212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7306.18468.1 ID=mRNA_Ecto-sp13_S_contig7306.18468.1|Name=mRNA_Ecto-sp13_S_contig7306.18468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3069bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7306:2144..5212+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCTCCGGCTAACCACGCTAAGCTCAGTGGTGGCACGCACAAGAAGTA
CGTGAAAGTGGGTGGGCCAACGACGGTTGCGTCGAGGTCGTTCATGCAGC
AGCACGCCGAGGTATGCTGTGCTGTGGCGTCGTCGTTGTTGTCTAGGTCG
TCATCGTTGTTGTCTTAGTCGTCGTTGTTGCTGTCTTAGTCGTCGTCGTT
GTTGTCTTAGTCGTCGTCGTTGTTGTCTTAATCGTTTTTGTTGTCTTAGT
CGTCGTTGTTGCTGGCGTCGTCTTTTTCAAGTTGTCATTGTTGCTGCTTT
TTTGTGTTGCTGCGATTATTTTTGGTACACGTATAGGTGTTGTTTTCAAA
GTTGATCACTTTGCTCGGTGTCGCCTGCTGTTCCAACCGATAACGAACGA
AGGAGCTTCCTTCGGGTCATGATGTGATGGCGTTTCTCTCTGTTCATGGT
TCGTTTTATCTGGCACCATCGAATTACCACATCGTCACGCCCTCCCACCA
AGCTCTATACCCCTACAACAGAGCCCGACGTTACTTCATCTCAAGCCTCG
AGATGCGGGCCATTATTCGCAGAAACCGCACTGCTGCTGTCCGTGGATGA
TAAGAATTCAGTATCCTGTGGGTGTGGTGTGCATCTCTCCATCTAAAAAA
GCAAAACCCCCCTTCGTGATCGGTCCTGCCACCGAAGCAGGCTGCTGCTG
CCGCCGCCGCTGTCGAGACGTCGCGTGCATCCAGCAATAGTGGGTCCCCT
CCCCGGGCGATGTCAGCTACTTCCGGTAGCCAGGCCGGATCGGACGAGAA
GGATCGATCGGTCAACAGCGACGAAGCCCTGGGAGTTGTGGACGAGGAGG
GGCTGGGGTTGGGGGGGAGGAGAGACAGAGAAAAGAAGCAGTTCGGTACT
AGGTAAGAGAATGATTGCTGTTGTTCGGTACAACAGTAGTTCTGGGGCCC
AGCCGTAGGAACCACACTCGCAAGAAACCCCGGGGTCGATTTTTTGAAAA
TATGGAACAGTTACTTGCTGAGATCGCCTTTTTTGTTTATGATAAATATG
TAGCACGTTGCAGCAGACCCCTCTTGCGAAATGAAGGATGCTTGAAAAAT
GCCGACGCCCCAGTGCGCCTCGCTAGAGAGCAGTCACAACCCTAACCCCC
TGTCCCTCTCAACATCACCAACACATACAGAGACAGCGGTGCCACTGGGC
ACGCCACCGGGCAGCGCGGAAGCTACACCGGAGCGAGCGGCAGCGGCGGC
GGCAGCAACAACGCCGCTATCGGCGGTGCGGCGGGGGCCGGAGACAACTC
GGTGTTCGACCGCCTCCCTTACAGCTACACCGAGTCGGAGCGGAAGCGGA
GACAGCCGGAGGCGGCGCCGGCGCCACCGGCGATCCCGGCCTCCTCGAAC
CCTGGCACCGGCAGGCAGCCGTTTTCGACCCGACGATCTTCCCAGGACAA
GGAGGCGGTAGCTGTATCGGCTGCTGCTGCTGCTGCTGCTGCTACTGCTG
CCGGGGGACCGCAGAATCCTCTGCTTCCTTCTCGACGTAGCGTCGAGTTG
GAGAACGGCGGCGGGCGTTCGGACGAGAGGGGGGGGAGGTGACCGCCACC
GCCAGGTTAAGGCTTGGGCCCGTCTCCTTGTTGATGTGGCAAGGACGGGG
GGCTCGGGACACAGCCTGAGGGAGGGGGTCTGTTTCGAATGGAACACGAA
GGTCCAGCTGTCACCGGGGTTTGCTTGTCTGTGCGGGGAAAGGGGGTGGG
TTTGTTACCATGGTTGGGAGCACACAGCGAGCGAACTCATACACCCCGCC
CTGCGGATGGACGATGGGGTTGGAGCCGCGAGGGGCGACGGTGACGCTTG
ACTAGGCACGTCGTCGGTGCTTTTTTGCGGTAGGATACCTCGGGGAGGGG
GGGGTCGTCCAAAGAGGATGGGGTTTTTGGCTTCAATCGTGTCGAGGGTT
CGGGTTGTTGCTCATCTTCATGCTCGTTTTGGCGCTCAGTGACGGCCGGG
TTGGTTGTACATTAAATATTTTGCGACGCGCGTGACCCATTTCTTGCTGT
GTGTATGTAAATCTTCCCGGCTTGTCGGCCTTTTGTAGCGTTATTGTAAT
GGTGGTCGTTGCTCCCGCATACGATCATGAGATGAGAGAACATCTGCAGT
TGGTGCTTTTCGCGGCCTGCTGAATTTGAGACAGGAGTGAGGTGAAGTGC
TTGGTTTTTGAGATTGTGCTTGTTTGTGTGCGGGTTTCCTTCGGGTATTG
ATGTGTGTTTTTTGTCTGGGGGGGGGTGATGTGCGTGCTACGGTGGAGTG
CTTGGAGCACGTCCGAGAGTAGTTTGTTTGGCTGTTGACGGTAGGCGATG
TCGCCGAGTAGTATCACGTGGAGGGAACATCTTGGGCGGACCAAAACATG
ATCGGTACATGTAGGGCCAACGGCACGCGAGGTGGCAAATTTGTGTCTTT
GTTCCTCTCTCAAAAGTGAGAGTCTCGCTGTGCCCCAATCTGATTGATTG
GGCGGGGTCGCTACAGCACGGCGTTCCCGCGGCTCTTGAGTCGCTCCTTG
ATGCTGCGTTTGTATTTTTGGCGATTTTTTCTCCGGGGGGTGGGTGAGGG
GGGGTCATTTCACCGTTTGTTTAAGGTCTCTGTTGACGTGTATCGACGTT
AGCGCCGGGTGCGCGTGTCGGTGACATGGTAGACGTCGCTTCTACACGCA
AAGGGCAGCAGCATTCTTACATGCTTACGAACCGGCCGATCTTTCCCCCT
CCGTCGTCGCTCTCCCCCCCCCCCCCCCACCATTCCGCCAGTGCTAGCGA
AGTATTTGTTGTCAACGAGCAAGGAGGTGCAGGTTTCATCAAATCATTTT
TGCCGGGCAGCACCAGCAGTCGACCAGTCCACAACAACAACGTTGTTGGT
AGTAAATAGATTATTGTTCGGTGTGCATGTTGTGTTATTCTTTCGTGTTG
TTTGTTTTTGTGGTCCACCGTCGGCACTTGTTACCCAAGAAACCTCGTTG
TTCCGCTTGTTTTACGTCATCATGCCGTGTACGGGGGTTGTTTCGGTTCA
TCAGAGGACAAGATGAAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7306:2144..5212+

>mRNA_Ecto-sp13_S_contig7306.18468.1 ID=mRNA_Ecto-sp13_S_contig7306.18468.1|Name=mRNA_Ecto-sp13_S_contig7306.18468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7306:2144..5212+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACAACAACGCCGCTATCGGCGGTGCGGCGGGGGCCGGAGACAACTC
GGTGTTCGACCGCCTCCCTTACAGCTACACCGAGTCGGAGCGGAAGCGGA
GACAGCCGGAGGCGGCGCCGGCGCCACCGGCGATCCCGGCCTCCTCGAAC
CCTGGCACCGGCAGGCAGCCGTTTTCGACCCGACGATCTTCCCAGGACAA
GGAGGCGGTAGCTGTATCGGCTGCTGCTGCTGCTGCTGCTGCTACTGCTG
CCGGGGGACCGCAGAATCCTCTGCTTCCTTCTCGACGTAGCGTCGAGTTG
GAGAACGGCGGCGGGCGTTCGGACGAGAGGGGGGGGAGGTGA
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