mRNA_Ecto-sp13_S_contig7277.18428.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7277.18428.1
Unique NamemRNA_Ecto-sp13_S_contig7277.18428.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7277.18428.1 vs. uniprot
Match: D7FWJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWJ1_ECTSI)

HSP 1 Score: 351 bits (900), Expect = 1.210e-114
Identity = 260/277 (93.86%), Postives = 261/277 (94.22%), Query Frame = 1 
Query:  241 NRLARNKKGRKPGDVFSPTVEDDKKERIKIMLGMGAADASAQPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYKGNGDV---SGSTAGVPPPAYKPPMSARPDPAPSAASLADSSYQYPDPSPANSPSSAMLNSTATVMSEAVLSTAVGEGGRGGGTSGATSMGNGGGLTSXXXXXXXEPKQVSXXXXXXXXXSATSRSAAGVQTTPRVDVNGSAEMNRIKAELSAKNQQLQQMQLKVEEYKDNLHQAQTTSTRELDDADV 1062
            NRLARNKKGRKPGDVFSPTVEDDKKERIKIMLGMG ADASAQP A    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SYKGNGDV   +GSTAGVPPPAYKPPMSARPDPAPSAASLADSSYQYPDPSPANSPSSAMLNSTATVMSEAVLSTAVGEGGRGGGTSGATSMGNGGGLT XXXXXXX PKQV XXXXXXXXX ATSRSAAGVQTTPRVD  GSAEMNRIKAELSAKNQQLQQMQLKVEEYKDNLHQAQTTSTRELDDADV
Sbjct:  181 NRLARNKKGRKPGDVFSPTVEDDKKERIKIMLGMGTADASAQPAAASTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYKGNGDVPGSTGSTAGVPPPAYKPPMSARPDPAPSAASLADSSYQYPDPSPANSPSSAMLNSTATVMSEAVLSTAVGEGGRGGGTSGATSMGNGGGLTXXXXXXXXXPKQVXXXXXXXXXXXATSRSAAGVQTTPRVDAKGSAEMNRIKAELSAKNQQLQQMQLKVEEYKDNLHQAQTTSTRELDDADV 457
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7277.18428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWJ1_ECTSI1.210e-11493.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7277contigEcto-sp13_S_contig7277:531..4911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score353.2
Seed ortholog evalue1.4e-94
Seed eggNOG ortholog2880.D7FWJ1
Model size1064
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-26_006420.1
Cds size1062
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7277.18428.1prot_Ecto-sp13_S_contig7277.18428.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7277 531..4911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.631453-CDS-Ecto-sp13_S_contig7277:530..5931681463995.631453-CDS-Ecto-sp13_S_contig7277:530..593Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7277 531..593 +
1681463995.6443748-CDS-Ecto-sp13_S_contig7277:1194..13501681463995.6443748-CDS-Ecto-sp13_S_contig7277:1194..1350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7277 1195..1350 +
1681463995.6534843-CDS-Ecto-sp13_S_contig7277:1592..19371681463995.6534843-CDS-Ecto-sp13_S_contig7277:1592..1937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7277 1593..1937 +
1681463995.6641605-CDS-Ecto-sp13_S_contig7277:3045..34221681463995.6641605-CDS-Ecto-sp13_S_contig7277:3045..3422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7277 3046..3422 +
1681463995.674241-CDS-Ecto-sp13_S_contig7277:4102..41811681463995.674241-CDS-Ecto-sp13_S_contig7277:4102..4181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7277 4103..4181 +
1681463995.6860585-CDS-Ecto-sp13_S_contig7277:4869..49111681463995.6860585-CDS-Ecto-sp13_S_contig7277:4869..4911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7277 4870..4911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7277.18428.1

>prot_Ecto-sp13_S_contig7277.18428.1 ID=prot_Ecto-sp13_S_contig7277.18428.1|Name=mRNA_Ecto-sp13_S_contig7277.18428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=354bp
GNLDIVTGLINFNANLEARNKDNLSPLHVAAGMGHIDVTKRLLDNGADME
AEDNALYTPLWRAAYYGHPEVVEVLLDKGANRLARNKKGRKPGDVFSPTV
EDDKKERIKIMLGMGAADASAQPTAASTPAAASAASTAPTSAVENGVQAA
RGTGGTVGGKGGSAGGSSYKGNGDVSGSTAGVPPPAYKPPMSARPDPAPS
AASLADSSYQYPDPSPANSPSSAMLNSTATVMSEAVLSTAVGEGGRGGGT
SGATSMGNGGGLTSAGGGSGGEPKQVSVGVGGSGEGSATSRSAAGVQTTP
RVDVNGSAEMNRIKAELSAKNQQLQQMQLKVEEYKDNLHQAQTTSTRELD
DADV
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mRNA from alignment at Ecto-sp13_S_contig7277:531..4911+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7277.18428.1 ID=mRNA_Ecto-sp13_S_contig7277.18428.1|Name=mRNA_Ecto-sp13_S_contig7277.18428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7277:531..4911+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAACTTGGACATCGTGACCGGACTCATCAACTTCAACGCCAACCTAGA
GGCCCGAAACAAGGTAACTATCGCACAAGAATAGAATATAGCCCGAACCT
CTCTCCCTCTCGGTCTTCGTTATACGGCGTTCTTCTCCAGTTGGATGAAG
TTGCAAGGGCTAATATCTGTGTAGGTGGACTGTTGGAATTTTGCCACCCT
TTTATAAAATCCCTGGGCCTCATCGCTTTGGGTACCAAGTACATCCAATG
CATGAATAACACACGTTTAGTGACACGTTCCCCCGGAGACAACAGTAACA
AAAGCATTTGTTGATGTGCTTTGGACGAAAAAATGCATGCACTGAAAAAC
CTCCGGTGCTTAAGTTCCTCGTGCATACCACCGGCTGATGCGTAGAGCAC
AAAAACTGCAGGTGTATACTAGAGCCCAAGGTAAATTGGACGAAAGCACA
CATAGACGAGATGAGACTGGACGAGACCAGAACGAGACGATACTGCTGTA
GTCCGAACGCCCCTGCCGTGTTGCTGGGATCGTCCAATGCATACCGCTGT
ATCGTACCACCTTCGTTGGTGATGTATCGCCGTCTTCAATGAGGCGCCGT
GCCCCTGTATCCCGTGACCTTTCCACCACCAATCGATGAACACTCGACAC
ACCGATCACTGCAGGACAACCTGTCCCCGCTGCACGTGGCCGCCGGCATG
GGCCACATCGATGTAACGAAGCGTCTGCTCGACAACGGGGCTGACATGGA
GGCCGAAGATAACGCTCTCTACACCCCACTCTGGAGAGCCGCTTACTACG
GACACCCGGAGGTGGTGGAGGTAGGCAGTATTACGTTGGATTGAATTGAT
TGTGTTGACTTGTGGCTGGTGGGGATTGTTGTTGCTTCATGTCACTTCGG
TTCTGTGCGTGTGTCAGCATACATGCCCACGCCCGTGGTGTGAAGTGTTA
AGGCAGGAGCGCGCTTGGGCGATCTGCGTGTGGGTGGGCCGCGTAACGCG
TGTTTGCGCTGATCGAAAGTATGAGCGGCACACCACAACACCACAACGGC
GGGTTGGTGCAGGTGCTGCTGGACAAGGGCGCCAACAGACTAGCACGCAA
TAAGAAGGGCCGCAAGCCCGGAGACGTCTTCAGCCCCACGGTGGAAGATG
ACAAGAAGGAGCGCATCAAGATCATGCTGGGGATGGGTGCAGCAGATGCC
TCCGCCCAGCCCACTGCCGCTTCCACGCCGGCTGCAGCCTCAGCTGCTTC
GACGGCCCCGACATCCGCTGTGGAGAATGGCGTTCAGGCGGCCCGCGGAA
CAGGGGGCACCGTGGGTGGCAAAGGCGGTTCGGCGGGTGGGTCGAGCTAC
AAGGGGAATGGGGATGTGTCAGGGTCCACAGCAGGGGTGCCCCCGCCAGC
GTACAAGGTGGGTCTTGACATGTTGAGGCTGTGAAGGACTCTTGAGTGTG
TCGTGGTGTTGTGTGTTTTACATGAGGGGGTTGCCAACACCGAAAGAAGT
CTTACCATCCAGCTACAGTACAGCAGTGTTTTGTGGCATAGGGTTGGTCG
TCATGTAGGACGTGCGTGACGAGCGGGTACTTGAAGTATGAAGTTGGACG
TTTGATGGTGTTGTAGGCTTTGTGGTTTGTTGGAGGGTGGCGGGGGATGC
AGCCGAGGTGACTTTGCTCTTCTCTCAAGGCTCAAGGAAGATCTGCACAA
GAGAACGCAATACTCGGTTCTTCGAAGCACATATGTACGTCTGTAGCGTT
TGCAGTCTTTTTTTGCTAAGTAGTGATTGCTTGCCAAGACTTGACCTAGC
TAATGCTTTGGTACAGTATGAAAAGGCTATTGGCGAACTTTTCGCGGGTT
ATTTCTCTATCCCTTAACGAACACAAACACTACGCTTCCTCTCGCGAACG
GCCTTGCTTAGGAGATCTTGCATTCGTGCATTCTTGCACTGTTTCTCCCC
CGCCAGAGCACGTGACAACAGCAAAAGTTTAGGGGTGTACGTGTAGTGTT
GTGTCGTGATGGGCTCTTTATGCATAGGTGCTGTTCATAGGAATTTTGGC
CTGTTCATGAGGCCTGCCGGCCGGTAGCCCATAAACCAATTTTGAAGGCA
ATCCAAGGCTTGAGCAGAAAGGCGCGCTTCCTGAAGACTCAAGACCCCGG
TGTCGGTGTCGTAAGGCCCCGCTTAGCCGGCACCTACAGCGACACCTACA
GCGCGGGCTGTAAACCCCTCCACCCCCACCACCACAATATTGTACTCGCG
GCATTAGCATTGCTGAAACGCCGAGGAGAAGACCCGATTCGATGCTTGGC
ACCCTCTCGATCCGTACCTCAATATCTCATAATAGCATGCTACAGTGGCA
TGGAAAGGACGATAGCACAGGACCGACTGGTGGTGTTGTACTGCAGTGCA
TGTGCAGTATATGGTGTCGGATCGGCTCCATGGTCAACGCTCACATGAGA
CAATCCCCCCCTCCCCCCCTCCCCTGCTTGAAACCGTCGATGGATCGAAT
GGATCGGATCAACAGCCACCGATGTCAGCGCGCCCGGACCCAGCACCATC
CGCGGCCAGCCTGGCGGACTCCTCCTACCAATACCCGGACCCCTCTCCGG
CCAACTCGCCCTCCTCGGCGATGCTCAACTCGACAGCTACGGTTATGTCG
GAGGCGGTACTCAGCACGGCGGTGGGGGAGGGCGGCAGGGGCGGCGGAAC
CTCAGGGGCGACTTCGATGGGAAATGGAGGGGGGCTGACCAGTGCGGGCG
GTGGGTCGGGCGGCGAGCCCAAGCAGGTGTCGGTGGGCGTTGGGGGTTCG
GGCGAGGGGTCGGCGACTAGTCGATCGGCGGCCGGGGTGCAGACGACTCC
GAGGGTTGACGTGAACGGCTCAGCCGAGATGAACCGTATAAAGTGAGTCA
GTCCCTTGTTGCGACAGGCAGGGGCGACGCCTGATGTTGGAGTGTGGTAG
TGTGGTGGACAGCAGTCCCTTGTAATGAGCAGGCATGATACCTGTTGGGG
GTATGGTAGAATAGAAGAGTAGCGCTGGCCACCCCGCGGTGTGTTTGTGG
ATCGTCGCAAAGCCAGCCTGCAGAAGATGGATTGTATGATACGTGTGGAC
CAGCCGCCGGAGTGATAAGTAAAAGCCGTTAAATGTTCGCTGCGGCAAGA
TATTGCGTCGCTGATGCACAAGAACGACGTGGTTTTGTGTTCGTTCAATT
TGCTTTGTACGCCTGGAGAATCCTTCGTGTTTTCGAGTCCGTAACTGAGC
CCACCCCTTGTTCTTGCGGCTTGCATGGTACATAATAGCAGAAGCATCAC
CGAGCCATTGCCTGTTGTCAGCAATTTGTCGACAAAGCATGTGACAGCAC
TACACCTCCAGGCTGGCGGTCGACTCAGAGCTTGCCTCCAGTTGTGTGCT
GGTCTAAGTGCCCAACAAGGAGCTGGCGACCTCGTCTTTTTCCAATGCCC
GCTGCAATTTTTCTACATTGTTCTTGTTCGTCTTTCGCTTTGCTCTCATG
GCTCAAATGTCGCGAGGATGATATTGTATCACTGTACCGAAGTCGTGCGA
TTTCCACCGCTTCTCGGCTCAGGGCGGAGCTGTCTGCGAAGAACCAACAG
TTGCAACAGATGCAACTCAAGGTCGAAGAATACAAGGATAACCTACATCA
GGTGCGTGTGTGTACTCATGACCCGGACACTTTGCCCCTCTTTTTTGCAA
GTTCTGTTTTTCTTGTCTGGTCTTGGATGGGGCGGTCTCTGTATGTGCCG
TTACTTGCCCCTTTCGCCCCTTTCGCGCGGTATGTTTTTACAGTTTTGTT
GCGTGATCACTGAAGGAAATTGCAGGACGCGCCTCCCGGCAGCGGTTGTT
TGAGTGGCTAGCTTTGTCGGTGCTGATCGTAGTACCCCTTTGTTGTATGC
GTTGTTTCGCGAACTCACCGTATTTGTTTGAGCGCGCCGGCTTTCCTTGG
CGTGTCGTCGGATCTACATATGTGTCATGTCTTCTTGAGTGAATACTTAG
TAGACATGTTTGGGATTTTTTTCACTATAACGAAGAGAGCATTAGTATTG
TACCATCCTGGGCATGTCGGGATATCGGGATGCCTGTAAGCACACCGTCG
AGTAGGCGCTGCCATCTTGGTACCGAATAACAACTCAAGCTACGGAGAGA
AGAGATACTTCATTCCCGACCCTGCTGTGGTAGTGCAGACCTTCCGCACC
AGTTATGAGGTGTGAATAGCTGTCGTTGTCATCGAGAGAGAGAGGGGAGA
GGGAGAGATGGAGATGCAAACATGACGGCTTCGTTCGTCAGTCTCAGTTT
GATTATGATGTGCGTGCGCACTTCGGCGTGGCTGAGCAGGCGCAAACAAC
CAGCACTCGAGAGCTGGACGATGCCGATGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7277:531..4911+

>mRNA_Ecto-sp13_S_contig7277.18428.1 ID=mRNA_Ecto-sp13_S_contig7277.18428.1|Name=mRNA_Ecto-sp13_S_contig7277.18428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1062bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7277:531..4911+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAACTTGGACATCGTGACCGGACTCATCAACTTCAACGCCAACCTAGA
GGCCCGAAACAAGGACAACCTGTCCCCGCTGCACGTGGCCGCCGGCATGG
GCCACATCGATGTAACGAAGCGTCTGCTCGACAACGGGGCTGACATGGAG
GCCGAAGATAACGCTCTCTACACCCCACTCTGGAGAGCCGCTTACTACGG
ACACCCGGAGGTGGTGGAGGTGCTGCTGGACAAGGGCGCCAACAGACTAG
CACGCAATAAGAAGGGCCGCAAGCCCGGAGACGTCTTCAGCCCCACGGTG
GAAGATGACAAGAAGGAGCGCATCAAGATCATGCTGGGGATGGGTGCAGC
AGATGCCTCCGCCCAGCCCACTGCCGCTTCCACGCCGGCTGCAGCCTCAG
CTGCTTCGACGGCCCCGACATCCGCTGTGGAGAATGGCGTTCAGGCGGCC
CGCGGAACAGGGGGCACCGTGGGTGGCAAAGGCGGTTCGGCGGGTGGGTC
GAGCTACAAGGGGAATGGGGATGTGTCAGGGTCCACAGCAGGGGTGCCCC
CGCCAGCGTACAAGCCACCGATGTCAGCGCGCCCGGACCCAGCACCATCC
GCGGCCAGCCTGGCGGACTCCTCCTACCAATACCCGGACCCCTCTCCGGC
CAACTCGCCCTCCTCGGCGATGCTCAACTCGACAGCTACGGTTATGTCGG
AGGCGGTACTCAGCACGGCGGTGGGGGAGGGCGGCAGGGGCGGCGGAACC
TCAGGGGCGACTTCGATGGGAAATGGAGGGGGGCTGACCAGTGCGGGCGG
TGGGTCGGGCGGCGAGCCCAAGCAGGTGTCGGTGGGCGTTGGGGGTTCGG
GCGAGGGGTCGGCGACTAGTCGATCGGCGGCCGGGGTGCAGACGACTCCG
AGGGTTGACGTGAACGGCTCAGCCGAGATGAACCGTATAAAGGCGGAGCT
GTCTGCGAAGAACCAACAGTTGCAACAGATGCAACTCAAGGTCGAAGAAT
ACAAGGATAACCTACATCAGGCGCAAACAACCAGCACTCGAGAGCTGGAC
GATGCCGATGTG
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