mRNA_Ecto-sp13_S_contig72249.18352.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72249.18352.1
Unique NamemRNA_Ecto-sp13_S_contig72249.18352.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72249.18352.1 vs. uniprot
Match: D8LCJ6_ECTSI (YHYH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ6_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.830e-32
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:   91 MMINGVAVYSSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQ 264
            MMINGVAVYSSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQ
Sbjct:    1 MMINGVAVYSSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQ 58
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BLAST of mRNA_Ecto-sp13_S_contig72249.18352.1 vs. uniprot
Match: D7FUL4_ECTSI (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUL4_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 9.430e-11
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   58 TNLSDVSGPVGMMINGVAVYSSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQ 264
            T+LS  +G +G+M NGV++YS++A D A   Y   A  L  DT D CGG  T  G YHYH+  GCLQEQ
Sbjct:  135 TDLSSAAGTIGLMRNGVSMYSAWALD-AVEEYEDTAFYLEADTLDPCGGHATPTGSYHYHSTAGCLQEQ 202
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BLAST of mRNA_Ecto-sp13_S_contig72249.18352.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.740e-10
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   58 TNLSDVSGPVGMMINGVAVYSSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQ 264
            T+LS  +G +G+M NGV+++S++A D A   Y   A  L  DT D CGG  T  G YHYH   GCLQEQ
Sbjct:  120 TDLSSAAGTIGLMRNGVSMFSAWAVD-AVVEYEDTAFYLEADTFDPCGGHATPTGAYHYHGTAGCLQEQ 187
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72249.18352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCJ6_ECTSI3.830e-32100.00YHYH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FUL4_ECTSI9.430e-1150.72YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KP42_9PHAE1.740e-1049.28YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72249contigEcto-sp13_S_contig72249:210..681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score66.6
Seed ortholog evalue6.5e-09
Seed eggNOG ortholog2880.D7FUL4
Model size264
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.YHYH protein
EggNOG OGs2CZR0@1,2SBB2@2759
Ec32 ortholog descriptionYHYH domain
Ec32 orthologEc-03_002670.1
Cds size264
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463989.6403947-CDS-Ecto-sp13_S_contig72249:209..3541681463989.6403947-CDS-Ecto-sp13_S_contig72249:209..354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72249 210..354 -
1681463989.65187-CDS-Ecto-sp13_S_contig72249:562..6811681463989.65187-CDS-Ecto-sp13_S_contig72249:562..681Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72249 563..681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72249.18352.1prot_Ecto-sp13_S_contig72249.18352.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72249 210..681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72249.18352.1

>prot_Ecto-sp13_S_contig72249.18352.1 ID=prot_Ecto-sp13_S_contig72249.18352.1|Name=mRNA_Ecto-sp13_S_contig72249.18352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
AVSVDVNGSPWFRGGIDRATNLSDVSGPVGMMINGVAVYSSYADDRAATT
YGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQ
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mRNA from alignment at Ecto-sp13_S_contig72249:210..681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72249.18352.1 ID=mRNA_Ecto-sp13_S_contig72249.18352.1|Name=mRNA_Ecto-sp13_S_contig72249.18352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=472bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72249:210..681- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGAGCGTTGACGTAAACGGTTCCCCGTGGTTCCGTGGCGGCATCGA
CCGCGCGACCAACCTCAGCGATGTTTCAGGGCCCGTCGGCATGATGATTA
ACGGGGTCGCCGTCTACAGGTGAAATGTTGTCGTACCTGCGTTGCTGTTC
ACGACGGCGAAGAGGTGTCGTAGCACACTACGATCCTAGTTTCACCCCAA
GGAATACGACGTGGGTAGTGCTGTGATCCACCACCGTTGCCGACACCACG
ACCGCACACGGCCCCCCACCACGCTCTTTTAGCCCATCTTCCGACCTCAC
CTCTACCCTCCACCCCGCTGTTTCAAGTTCTTACGCCGATGATCGGGCAG
CCACAACGTACGGGGCCGCTGCGGCCAAGCTGCATGGCGACACCACTGAC
CTGTGCGGGGGCAGCACGACCGCAGACGGGGTGTACCACTACCACAATGC
CCCAGGGTGTCTCCAGGAACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72249:210..681-

>mRNA_Ecto-sp13_S_contig72249.18352.1 ID=mRNA_Ecto-sp13_S_contig72249.18352.1|Name=mRNA_Ecto-sp13_S_contig72249.18352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72249:210..681- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGAGCGTTGACGTAAACGGTTCCCCGTGGTTCCGTGGCGGCATCGA
CCGCGCGACCAACCTCAGCGATGTTTCAGGGCCCGTCGGCATGATGATTA
ACGGGGTCGCCGTCTACAGTTCTTACGCCGATGATCGGGCAGCCACAACG
TACGGGGCCGCTGCGGCCAAGCTGCATGGCGACACCACTGACCTGTGCGG
GGGCAGCACGACCGCAGACGGGGTGTACCACTACCACAATGCCCCAGGGT
GTCTCCAGGAACAG
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