mRNA_Ecto-sp13_S_contig72177.18344.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72177.18344.1
Unique NamemRNA_Ecto-sp13_S_contig72177.18344.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72177.18344.1 vs. uniprot
Match: A0A6H5KZ61_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ61_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 2.840e-52
Identity = 96/105 (91.43%), Postives = 97/105 (92.38%), Query Frame = 1 
Query:    1 RAMEGAMGIYYHGFAREHIVAHREEDDAKRVEHLLDKGAQNLRFVLRKYRMTEPRPPEPLGTPERTRTKKTRXXXXXXXXXXXDRQEAEGAAGWSNDSSTWTPGR 315
            RAMEGAMG YYHGFAREHIVAHREEDDA+RVEHLLDKG QNLRFVLRKYRMTEPRPPE LGTPERTRTKKT XXXXXXXXXXX   EAEGAAGW NDSSTWTPGR
Sbjct:   19 RAMEGAMGNYYHGFAREHIVAHREEDDAERVEHLLDKGEQNLRFVLRKYRMTEPRPPESLGTPERTRTKKTXXXXXXXXXXXXXXXEAEGAAGWGNDSSTWTPGR 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72177.18344.1 vs. uniprot
Match: C1MM80_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MM80_MICPC)

HSP 1 Score: 49.7 bits (117), Expect = 1.150e-5
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   28 YYHGFAREHIVAHREEDDAKRVEHLLDKGAQNLRFVLRKY 147
            YY   ARE  VAHR+EDDA RVE ++ K  ++LR+VLRKY
Sbjct:   26 YYAVVAREKFVAHRDEDDAARVELIVRKSREDLRWVLRKY 65
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72177.18344.1 vs. uniprot
Match: L8GED1_ACACA (Complex 1 protein (Lyr family) protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GED1_ACACA)

HSP 1 Score: 48.1 bits (113), Expect = 4.870e-5
Identity = 18/44 (40.91%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   16 AMGIYYHGFAREHIVAHREEDDAKRVEHLLDKGAQNLRFVLRKY 147
            A  IYY+ +AR H + H+EE+D +RV+ ++++G  +LR++  KY
Sbjct:   36 ATRIYYYNYARTHFMQHQEEEDEERVQEIIERGKNDLRWLKAKY 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72177.18344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZ61_9PHAE2.840e-5291.43Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
C1MM80_MICPC1.150e-560.00Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
L8GED1_ACACA4.870e-540.91Complex 1 protein (Lyr family) protein n=1 Tax=Aca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72177contigEcto-sp13_S_contig72177:31..648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size318
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-00_007730.1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463988.62423-CDS-Ecto-sp13_S_contig72177:30..2881681463988.62423-CDS-Ecto-sp13_S_contig72177:30..288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72177 31..288 -
1681463988.6432586-CDS-Ecto-sp13_S_contig72177:588..6421681463988.6432586-CDS-Ecto-sp13_S_contig72177:588..642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72177 589..642 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463988.658319-UTR-Ecto-sp13_S_contig72177:642..6481681463988.658319-UTR-Ecto-sp13_S_contig72177:642..648Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig72177 643..648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72177.18344.1prot_Ecto-sp13_S_contig72177.18344.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72177 31..642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72177.18344.1

>prot_Ecto-sp13_S_contig72177.18344.1 ID=prot_Ecto-sp13_S_contig72177.18344.1|Name=mRNA_Ecto-sp13_S_contig72177.18344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MEGAMGIYYHGFAREHIVAHREEDDAKRVEHLLDKGAQNLRFVLRKYRMT
EPRPPEPLGTPERTRTKKTRRQQAAAKQRAADRQEAEGAAGWSNDSSTWT
PGR*
back to top

mRNA from alignment at Ecto-sp13_S_contig72177:31..648-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72177.18344.1 ID=mRNA_Ecto-sp13_S_contig72177.18344.1|Name=mRNA_Ecto-sp13_S_contig72177.18344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72177:31..648- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCAATGGAGGGAGCTATGGGCATCTACTACCACGGCTTCGCCAGGGA
ACATATCGTGGTGAGTTTTTTTGTTTGATATGAGCTGACCGACGCTCGGG
ACAGGGTACTACGAAGTCCGCAGCCGCACATCAAACTACGATGGATTATC
GCAAGTAGCTTTACACCCGAGTACCATCGGCGCTGAAGGTCTAGTTTCTG
CTCCCGCACCAGGGCGGGTGAACGCATCAAGTATATTGGTTTCTGTTGCA
CAGGAGCGTTTCCGTGCTGCCGCACGCTTCTCTCCTAATGTTTGGCGCAA
CAAACGAGATATTGACCTGTTTCCTCCCCCTTGCATGTACCCTGAAACGC
GCTTAACAAGGCCCATCGAGAGGAGGACGACGCAAAGCGCGTCGAGCACT
TGCTAGATAAGGGCGCGCAGAACCTTAGGTTCGTCCTGCGAAAATACCGG
ATGACGGAACCAAGGCCGCCGGAACCTTTAGGAACACCCGAGAGAACAAG
GACCAAGAAGACGCGGCGGCAGCAAGCGGCAGCGAAGCAGAGAGCGGCAG
ATCGGCAAGAAGCCGAAGGGGCGGCGGGGTGGAGTAACGACAGCAGCACT
TGGACTCCTGGCCGATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72177:31..648-

>mRNA_Ecto-sp13_S_contig72177.18344.1 ID=mRNA_Ecto-sp13_S_contig72177.18344.1|Name=mRNA_Ecto-sp13_S_contig72177.18344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72177:31..648- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGAGCTATGGGCATCTACTACCACGGCTTCGCCAGGGAACATAT
CGTGGCCCATCGAGAGGAGGACGACGCAAAGCGCGTCGAGCACTTGCTAG
ATAAGGGCGCGCAGAACCTTAGGTTCGTCCTGCGAAAATACCGGATGACG
GAACCAAGGCCGCCGGAACCTTTAGGAACACCCGAGAGAACAAGGACCAA
GAAGACGCGGCGGCAGCAAGCGGCAGCGAAGCAGAGAGCGGCAGATCGGC
AAGAAGCCGAAGGGGCGGCGGGGTGGAGTAACGACAGCAGCACTTGGACT
CCTGGCCGATGA
back to top