mRNA_Ecto-sp13_S_contig6956.17963.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6956.17963.1 vs. uniprot
Match: D8LJN1_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJN1_ECTSI) HSP 1 Score: 662 bits (1708), Expect = 1.370e-237 Identity = 359/409 (87.78%), Postives = 371/409 (90.71%), Query Frame = 1
Query: 1 GRLPRGGMRDYGGXXXXXXXXXRQ-PWALILALRLIHQISQLQHKPPLTLALMAGMSALHLKPDIFEDLFGSKGVFEWSWLTGGFDHIRNVCLLPASILGTYERTGELEIRRLLVSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACTVGFSGVLFALKYVLSRRSPGVTTVMGFSVHTRYAAWLELVLISVMVPNASFLGHLCGILAGVLYVEVPIVLRVLNLFTGISLYNNSRGPSYTYNSGTSGRASPEGARRETRQQSPNLPAAYDIDSDPEAEEAALQEALRRSLLDSTAGGGADHSLRRENAGSVTNNPGSRSRPIENGAVAATEFLGPXXXXXXXXXXXXXXXXXXXXVAPDELRRRRLRRLGAG 1224
GRLPRGGMRDYGGXXXXXXXX R+ PWALILALRL+HQISQLQHKPPLTLALMAGMSALHLKPDIF+DLFG KGVFEWSWLTGGFDHIRNVCLLPASIL TYERTGE+EIRRLL+SPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHAC VGFSGVLFALKYVLSRRSPGVT+VMGFSVHTRYA WLELVLISVMVPNASFLGHLCGILAGVLYVEVPIVLRV+NLFTGISLYNN RG SYTYNSGTSGRASPEGARRETRQQSPN PAAYDIDSDPEAEEAALQEALRRSLLDST GGGA +LRR+N S +NPGSRSRPI + AVAATEFLGP +APDELRRRRLRRLGAG
Sbjct: 9 GRLPRGGMRDYGGXXXXXXXXQRRRPWALILALRLVHQISQLQHKPPLTLALMAGMSALHLKPDIFKDLFGRKGVFEWSWLTGGFDHIRNVCLLPASILDTYERTGEVEIRRLLMSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACAVGFSGVLFALKYVLSRRSPGVTSVMGFSVHTRYATWLELVLISVMVPNASFLGHLCGILAGVLYVEVPIVLRVVNLFTGISLYNNRRGRSYTYNSGTSGRASPEGARRETRQQSPNPPAAYDIDSDPEAEEAALQEALRRSLLDSTRGGGAGDNLRRDNGNSAADNPGSRSRPIGDDAVAATEFLGPAPTAPPPEENAGGYGAGGGEIAPDELRRRRLRRLGAG 417
BLAST of mRNA_Ecto-sp13_S_contig6956.17963.1 vs. uniprot
Match: A0A836CHG7_9STRA (Rhomboid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG7_9STRA) HSP 1 Score: 173 bits (439), Expect = 5.360e-47 Identity = 139/339 (41.00%), Postives = 184/339 (54.28%), Query Frame = 1
Query: 73 PWALILALRLIHQISQLQHKPPLTLALMAGMSALHLKPDIFEDLFGSKGVFEWSWLTGGFDHIRNVCLLPASILGTYERTGELEIRRLLVSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACTVGFSGVLFALKYVLSRRSPGVTTVMG-FSVHTRYAAWLELVLISVMVPNASFLGHLCGILAGVLYVEVPIV-------LRVLNLFTG-ISLYNN--SRGPSYTYNSGTSGRASPE-----------------GARRETRQQSPNLPAAYDIDSDPEAEEAALQEALRRSLLDSTAGGGA 1005
P+A +AL L+++ QL +KPP T L+A + +HL P GV L G + VCL PA ++ GE++ RL S +HGDD+HL+YNM S L+KGVSLE TMGT AFA L+ F S TL+++ A + + P ++C VGFS VLFALKYV + R P T +G F + +R+A+W EL+LI V+VPNASFLGHLCGILAGVL+V V L L + G Y+ RG YTY GTSG A+ GA ++ AA+++ E +A LQEALRRSL + GG A
Sbjct: 13 PYATGVALDLLNRFLQLPYKPPFTCFLIALNACIHLYPAAL------AGVLPARLLFGDYT---KVCLKPAKVVKEL-LNGEVDAVRLFGSALIHGDDLHLWYNMGSLLMKGVSLETTMGTPAFALLVVFLWALSHTLVVVVALASVYLGFDPG-FNSCMVGFSAVLFALKYVAAFREPARPTPVGYFLIDSRWASWAELILIQVVVPNASFLGHLCGILAGVLWVHGGAVVAYTAKTLAPLGVGRGGPGAYDTYGGRGSRYTYARGTSGTAAAXXXXXXXXXXXRPPAFAPGAASDS--------AAFEV----EDADAQLQEALRRSLEEVRLGGAA 328
BLAST of mRNA_Ecto-sp13_S_contig6956.17963.1 vs. uniprot
Match: A0A7S2TY11_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TY11_9EUKA) HSP 1 Score: 167 bits (423), Expect = 2.620e-45 Identity = 121/306 (39.54%), Postives = 167/306 (54.58%), Query Frame = 1
Query: 73 PWALILALRLIHQISQLQHKPPLTLALMAGMSALHLKPDIFEDLFGSKGVFEWSWLTGGFDHIRNVCLLPASIL--GTYERTGELEIRRLLVSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACTVGFSGVLFALKYVLSRRSPGVTTVMGFSVHTRYAAWLELVLISVMVPNASFLGHLCGILAGVLYVEVPIVLRVLNLFTGISLYNNSRGPSYTYNSGTSGRASPEGARRETRQQSPNLPAAYDIDSDPEAEEAALQEALRRSLLD 984
P ++L ++L QI+ L++KPP TLALMA SA++L +E+S + +VC+ PA IL G + +RL++S F H DD HLYYNM+S L KGV LE GT+ F G+ L S + + +AW++ + S M C VGFS VLFA K VL+ SP +T V G SV +YA WLELV+IS++ PNASFLGHLCGILAG++YV + + ++F+ S S P+ + T R R+ RQ E E+A L EA+RRS +D
Sbjct: 15 PRMMMLLMQLGRQIANLEYKPPATLALMALNSAVYL--------------YEFSLPF----RVPDVCMHPAKILFGGDW--------KRLVLSAFYHADDYHLYYNMSSLLWKGVQLEQQFGTEEFIGMTLVLLGLSHSFYVAAAWIMYTLGISSSSMQTCAVGFSAVLFAYKVVLNFNSPRMTNVYGISVPLKYACWLELVMISIITPNASFLGHLCGILAGLVYVTGGRAIMLGSIFSAAS----SSAPASAPSRHTIQRGILRPNRQRRRQ---------------EEEDADLAEAMRRSRMD 275
BLAST of mRNA_Ecto-sp13_S_contig6956.17963.1 vs. uniprot
Match: A0A225X2V2_9STRA (Serine protease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X2V2_9STRA) HSP 1 Score: 168 bits (426), Expect = 2.870e-45 Identity = 97/230 (42.17%), Postives = 134/230 (58.26%), Query Frame = 1
Query: 67 RQPWALILALRLIHQISQLQHKPPLTLALMAGMSALHLKPDIFEDLFGSKGVFEWSWLTGGFDHIRNVCLLPASILGTYERTGELEIRRLLVSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACTVGFSGVLFALKYVLSRRSPGVTTVMGFSVHTRYAAWLELVLISVMVPNASFLGHLCGILAGVLYVEVP 756
R + L L L+ QI QL+ KPP+TL LMA M +H + +LF L P +L ++ T R++ S +HGDD HLY+NM SFL KG +LE +G+ F + + LL L+++ A VL F +P P+H C+VGFSGVLFALK +L+ SP ++V GF V T+YAAWLELV+I +VP +SF+GH+CGILAG ++V P
Sbjct: 16 RDGQGVALMLMLVRQIQQLERKPPVTLGLMALMYGIHFQKTQTPELFAPYS------------------LCPDRVLSHWDWT------RIVASALIHGDDWHLYHNMVSFLWKGYNLEYKLGSVRFLLTVGYLLLLCHVLVVVVALVLATRFQMPGPLHQCSVGFSGVLFALKVLLNHNSPAYSSVYGFQVPTKYAAWLELVVIHFLVPRSSFMGHMCGILAGYIFVFSP 221
BLAST of mRNA_Ecto-sp13_S_contig6956.17963.1 vs. uniprot
Match: A0A6A4D013_9STRA (Rhomboid domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4D013_9STRA) HSP 1 Score: 166 bits (420), Expect = 2.010e-44 Identity = 95/225 (42.22%), Postives = 134/225 (59.56%), Query Frame = 1
Query: 82 LILALRLIHQISQLQHKPPLTLALMAGMSALHLKPDIFEDLFGSKGVFEWSWLTGGFDHIRNVCLLPASILGTYERTGELEIRRLLVSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACTVGFSGVLFALKYVLSRRSPGVTTVMGFSVHTRYAAWLELVLISVMVPNASFLGHLCGILAGVLYVEVP 756
L L L L+ QI QL+ KPP+TL LMA M LH + + +LF L P +L ++ +RL+ S +H DD HLY+NM SFL KG +LE +G+ F + + L+ L+++ A +L F +P+P+H C+VGFSGVLFALK +L+ SP ++V GF V T+YAAWLELV+I +VP +SF+GH+CGILAG ++V P
Sbjct: 24 LALMLMLVRQIQQLERKPPVTLGLMALMYGLHFQKNQTPELFAPFS------------------LCPDRVLSNWDW------KRLVASGLIHVDDWHLYHNMISFLWKGCNLEYKLGSVRFLLTVGYLLVLCHVLVVMVALILATGFQMPAPLHQCSVGFSGVLFALKVLLNHNSPAFSSVYGFQVPTKYAAWLELVVIHFLVPRSSFMGHMCGILAGYIFVYSP 224
BLAST of mRNA_Ecto-sp13_S_contig6956.17963.1 vs. uniprot
Match: A0A482UPC4_9ARCH (Rhomboid family intramembrane serine protease (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UPC4_9ARCH) HSP 1 Score: 162 bits (411), Expect = 3.870e-44 Identity = 93/237 (39.24%), Postives = 143/237 (60.34%), Query Frame = 1
Query: 73 PWALILALRLIHQISQLQHKPPLTLALMAGMSALHLKPDIFEDLFGSKGVFEWSWLTGGFDHIRNVCLLPASILGTYERTGELEIRRLLVSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMH-----ACTVGFSGVLFALKYVLSRRSPGVTTVMGFSVHTRYAAWLELVLISVMVPNASFLGHLCGILAGVLYVEVPIVLR 768
P + L ++++ Q+ +L +KPP+TL L+A H+ PD + +L ++R C+ P+ I+ + + R++++ F+H DDMHLYYNM S L KGV LE G+ F L+ +SLLAS L+++ ++V V+ V +H +C +GFS VLF+LKYVL++ SP T+++GF V +++AAW ELVL S++ P SF+GHL GILAG LYV + V R
Sbjct: 16 PVVVSLLIQILSQLEKLPYKPPVTLGLLAMNIIAHIHPDPY-------------FLDYSLTNVRQNCIWPSLIVSSLTNNHSILWNRIVLAGFMHADDMHLYYNMLSLLWKGVQLEQQFGSFQFGILVVYSLLASHILLVVMSYV---VYAVTQNIHISSYDSCAIGFSAVLFSLKYVLNQNSPAYTSILGFQVPSKWAAWAELVLASLLSPQVSFIGHLAGILAGYLYVHMDSVAR 236
BLAST of mRNA_Ecto-sp13_S_contig6956.17963.1 vs. uniprot
Match: A0A329RKV0_9STRA (Rhomboid domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RKV0_9STRA) HSP 1 Score: 164 bits (416), Expect = 7.520e-44 Identity = 97/232 (41.81%), Postives = 133/232 (57.33%), Query Frame = 1
Query: 67 RQPWALILALRLIHQISQLQHKPPLTLALMAGMSALHLKPDIFEDLFGSKGVFEWSWLTGGFDHIRNVCLLPASILGTYERTGELEIRRLLVSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACTVGFSGVLFALKYVLSRRSPGVTTVMGFSVHTRYAAWLELVLISVMVPNASFLGHLCGILAGVLYVEVPIV 762
R + L L L+ QI QL+ KPP+TL LMA M LH + +LF L P ++ ++ T R++VS +H DD HLY+NM SFL KG +LE G+ F + + LL L+++ A VL F +P P+H C+VGFSGVLFALK +L+ SP ++V GF V T+YAAWLELV+I +VP +SF GH+CGILAG ++V P +
Sbjct: 18 RNGQGIALMLMLLRQIQQLERKPPVTLGLMALMYGLHFQKQQTPELFAPYS------------------LCPDRVISHWDLT------RIVVSGLIHVDDWHLYHNMISFLWKGYNLEYKAGSVRFLLTVGYLLLLCHVLVVVVALVLATGFQMPGPLHQCSVGFSGVLFALKVLLNHNSPAFSSVYGFRVPTKYAAWLELVVIHFLVPRSSFTGHMCGILAGYIFVYSPAI 225
BLAST of mRNA_Ecto-sp13_S_contig6956.17963.1 vs. uniprot
Match: M4B4F7_HYAAE (Rhomboid domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B4F7_HYAAE) HSP 1 Score: 164 bits (416), Expect = 7.520e-44 Identity = 96/228 (42.11%), Postives = 135/228 (59.21%), Query Frame = 1
Query: 67 RQPWALILALRLIHQISQLQHKPPLTLALMAGMSALHLKPDIFEDLFGSKGVFEWSWLTGGFDHIRNVCLLPASILGTYERTGELEIRRLLVSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACTVGFSGVLFALKYVLSRRSPGVTTVMGFSVHTRYAAWLELVLISVMVPNASFLGHLCGILAGVLYVE 750
R A+ L L L+ Q+ QL+ KPP+TL LMA M L+ + +I +LF H +C P +L +E + R++ S +H D+ HLY+NM SFL KG +LE +G+ F + F L S TL++ A +L F +P P+H C+VGFS VLFALK +L+ SP +T+ GF V T+YAAWLELV I ++VP +SF+GH+CGILAG + V
Sbjct: 18 RNNHAIALMLVLLRQVQQLERKPPVTLGLMALMCGLYYQQNITPELF----------------HPYLLC--PDRVLNQFE------LMRIVASGLIHADEWHLYHNMISFLWKGYNLEYKLGSVQFLLTVGFLLALSHTLVIAVALILATCFQMPGPLHQCSVGFSSVLFALKVILNHDSPAFSTIYGFCVPTKYAAWLELVAIYLLVPQSSFMGHMCGILAGYICVR 221
BLAST of mRNA_Ecto-sp13_S_contig6956.17963.1 vs. uniprot
Match: A0A2P4XD54_9STRA (Serine protease family S54 n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XD54_9STRA) HSP 1 Score: 163 bits (413), Expect = 2.170e-43 Identity = 95/238 (39.92%), Postives = 136/238 (57.14%), Query Frame = 1
Query: 67 RQPWALILALRLIHQISQLQHKPPLTLALMAGMSALHLK----PDIFE--DLFGSKGVFEWSWLTGGFDHIRNVCLLPASILGTYERTGELEIRRLLVSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACTVGFSGVLFALKYVLSRRSPGVTTVMGFSVHTRYAAWLELVLISVMVPNASFLGHLCGILAGVLYVEVPIV 762
R + L L L+ Q+ QL+ KPP+TL LMA M LH + P++F L + + W W+ R++ S +H DD HLY+NM SFL KG +LE MG+ F + + L+ L+++ A VL + F +P P+H C+VGFSGVLFALK +L+ SP ++V GF V T+YAAWLELV+I +VP +SF+GH+CGILAG ++V P++
Sbjct: 16 RDGQGIALMLMLVRQVQQLERKPPVTLGLMALMYGLHFQKMQTPELFAPYSLCPDRVLSHWDWM------------------------------RIVASGLIHVDDWHLYHNMISFLWKGYNLEDKMGSVRFLLTVGYLLVLCHVLVVVVALVLAMGFQMPEPLHQCSVGFSGVLFALKVLLNHNSPTFSSVYGFQVPTKYAAWLELVVIHFLVPRSSFMGHMCGILAGYIFVYFPVM 223
BLAST of mRNA_Ecto-sp13_S_contig6956.17963.1 vs. uniprot
Match: W2QA40_PHYPN (Rhomboid domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=W2QA40_PHYPN) HSP 1 Score: 163 bits (412), Expect = 2.420e-43 Identity = 98/241 (40.66%), Postives = 138/241 (57.26%), Query Frame = 1
Query: 67 RQPWALILALRLIHQISQLQHKPPLTLALMAGMSALHLKPDIFEDLFGSKGVFEWSWLTGGFDHIRNVCLLPASILGTYERTGELEIRRLLVSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACTVGFSGVLFALKYVLSRRSPGVTTVMGFSVHTRYAAWLELVLISVMVPNASFLGHLCGILAGVLYVEVPIVLRVLNLFTG 789
R + L L L+ QI QL+ KPP+TL LMA M LH + ++F L P ++G ++ T R++VS +H DD HLY+NM SFL KG +LE MG+ F + L+ L+++ A VL F +P P++ C+VGFSGVLFALK +L+ SP ++V GF V T+YAAWLELV+I +VP +SF+GH+CGILAG +YV + +L+ G
Sbjct: 18 RNGQGIALMLMLMQQIQQLERKPPVTLGLMALMYGLHFQKQQTPEIFAPYS------------------LCPDRVIGHWDLT------RIVVSGLIHVDDWHLYHNMISFLWKGYNLEYKMGSVRFLLTVGCLLVLCHVLVVIVAVVLATGFQMPGPLYQCSVGFSGVLFALKVLLNHNSPTFSSVYGFRVPTKYAAWLELVVIHFLVPRSSFMGHMCGILAGYIYVYSSAMQSILSSGAG 234 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6956.17963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6956.17963.1 >prot_Ecto-sp13_S_contig6956.17963.1 ID=prot_Ecto-sp13_S_contig6956.17963.1|Name=mRNA_Ecto-sp13_S_contig6956.17963.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=403bp MRDYGGGGGGGRGRRRQPWALILALRLIHQISQLQHKPPLTLALMAGMSAback to top mRNA from alignment at Ecto-sp13_S_contig6956:3..2401+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6956.17963.1 ID=mRNA_Ecto-sp13_S_contig6956.17963.1|Name=mRNA_Ecto-sp13_S_contig6956.17963.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6956:3..2401+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6956:3..2401+ >mRNA_Ecto-sp13_S_contig6956.17963.1 ID=mRNA_Ecto-sp13_S_contig6956.17963.1|Name=mRNA_Ecto-sp13_S_contig6956.17963.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6956:3..2401+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |