mRNA_Ecto-sp13_S_contig6843.17803.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6843.17803.1
Unique NamemRNA_Ecto-sp13_S_contig6843.17803.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6843.17803.1 vs. uniprot
Match: D7FZG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG4_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 2.670e-48
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:   13 VLSRRASGSIFADRVGITRIPDRAWTIALDYLELGEGMRCRQLGRVFRDTVEASLSVLALSGVNTITWATPDNLAFLTRFKNVRTLHW 276
            V+SRRASG IFADRVGITRIPDRAWTIALDYLELGEGMRCRQLGR FRDTVEASLSVLALSGVNTITWATPDNLAFLTRFKNVRTLHW
Sbjct:  115 VMSRRASGLIFADRVGITRIPDRAWTIALDYLELGEGMRCRQLGRAFRDTVEASLSVLALSGVNTITWATPDNLAFLTRFKNVRTLHW 202
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BLAST of mRNA_Ecto-sp13_S_contig6843.17803.1 vs. uniprot
Match: A0A6H5L111_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L111_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.490e-14
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:   10 GVLSRRASGSIFADRVGITRIPDRAWTIALDYLELGE 120
            GVLSRRASGSIFADRVGITRIPDRAWTIALDYLELGE
Sbjct:  182 GVLSRRASGSIFADRVGITRIPDRAWTIALDYLELGE 218
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6843.17803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZG4_ECTSI2.670e-4896.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L111_9PHAE6.490e-14100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6843contigEcto-sp13_S_contig6843:4604..6451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size424
Hectar predicted targeting categoryother localisation
Exons3
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463940.6217349-CDS-Ecto-sp13_S_contig6843:4603..47231681463940.6217349-CDS-Ecto-sp13_S_contig6843:4603..4723Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6843 4604..4723 +
1681463940.631092-CDS-Ecto-sp13_S_contig6843:5478..56331681463940.631092-CDS-Ecto-sp13_S_contig6843:5478..5633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6843 5479..5633 +
1681463940.6399806-CDS-Ecto-sp13_S_contig6843:6302..64501681463940.6399806-CDS-Ecto-sp13_S_contig6843:6302..6450Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6843 6303..6450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6843.17803.1prot_Ecto-sp13_S_contig6843.17803.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6843 4604..6450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6843.17803.1

>prot_Ecto-sp13_S_contig6843.17803.1 ID=prot_Ecto-sp13_S_contig6843.17803.1|Name=mRNA_Ecto-sp13_S_contig6843.17803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
GGGGVLSRRASGSIFADRVGITRIPDRAWTIALDYLELGEGMRCRQLGRV
FRDTVEASLSVLALSGVNTITWATPDNLAFLTRFKNVRTLHWYVGVGMPS
KAESAARAAAAAGVEPAPAGGGVNVVAASEAAGAAAAAAAA
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mRNA from alignment at Ecto-sp13_S_contig6843:4604..6451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6843.17803.1 ID=mRNA_Ecto-sp13_S_contig6843.17803.1|Name=mRNA_Ecto-sp13_S_contig6843.17803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1848bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6843:4604..6451+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGAGGAGGCGTGTTGTCGAGGAGGGCGTCGGGGTCGATATTCGCCGA
CAGGGTCGGCATCACCAGGATTCCGGACCGGGCTTGGACTATCGCGCTTG
ACTACCTAGAGTTGGGCGAGGTGTGTGGTATGGCAGGCGTCGAGAGCTGG
AGACGCCATTCTGCATCCGCGCCGTGCGTGTATGTTAGGATTGTGTCTTT
AGTTGGGGCGTTAGGAACACCGGCCATTGACTGGCTGAAGAGGCGCCGAT
CTGAACGAAACGCCGAGGCTGCCGGGGGGGCCGCACGAGAACAGAGGTGG
CGGGGGGGGATAGGCAAGAAGGGGGCCCCGACATGTCGGGTCTAGACAAG
CGTTGTTTTGTTTAGAAGTAGAGACAAGAGCGGGGGGCTCGTGGGCAGGC
CATTTTTGGTGCGTCTCGTGCGTGCTTGAAGTTTTAATGTGCGTGAGTTA
TTTGTCGTGCCTCGAAACAACAACCACGACGAGCCCATGTTTTGTTGTTG
TATCGTCGCGTGGTGTTGATTGACCCACCGCCTCTCTTTCGTTGGGCCTG
TAGAAGCTGAGATCGAGCCATTCGACTGTTCAGCGCTGAGTAGTCGAAAG
AAGTTTGATTTCGGCTTCTAACCACCGCCGGCGAAGACAGAGCCTCGATG
ACGTATGTTCGGGACCGCCTTCGCGAGACGTGAAGTTGATGAAGAAATAA
TACAGGAGGGCGTAAGCAGACCCTTTCCCTCACCCTAAATCTAACCCAGC
TTCCCCGATTGTTTTTGTGATGCGTCGTGTTTACCCCAAATAGAAAACAC
CGTGCGAAGGCGTACGATAAATACTGTAGTGACGGTCATCTTCTTGTCTC
TTGTTGCGCATGCCTTTCCGCCCAGGGCATGAGGTGCCGGCAGCTTGGGC
GGGTCTTCCGCGACACCGTTGAGGCCTCCCTGTCCGTGCTAGCCTTGTCC
GGCGTGAATACCATCACCTGGGCCACTCCAGACAACCTGGCCTTCCTCAC
ACGGTTCAAGAACGTGCGGACGTTGCACTGGTGAGGAATTGACCTTTTCG
AGGGGGGTGGGGGGGGTGTGAGTGGGGGTGGGGGGGTACTCAAAGGGTTA
TCGTTAAACCATAAACCACTGACGCCGAAGGGGGGAAATGCCACTCGTTC
GCTGGTTGCTTTGGCCGTTGGCAAATGGAAGGAGCGTAGCTGGTTACGCC
TGCTGCTAAATAGCAGGGGCGCCGACAGGTGCGACAGAGATTAAACCTCC
CAAAGAACTCCTTTCAGCGGCACGTGTATCAGACATGTGGCGCGTAGCAG
CCATAGAGGTAGCGCCGGAAATTCGCGGCGCCCCTGTTTTTTGTGTGTGA
TTGCGTGCCCCAACCGAGGCGCAAAGAGTTTGTATGGTACCTAGTGAACG
AAGCCTTTCAAGTATCAATGTACATCGAGGCGTCCACTCCCCTCTCAACG
TACGTAGTCAGCACTTTTCGTCATGCGGTCTGCGGACTTCCCCCCTCGGG
CGCGTGTTCCTTCGTGCCAACACGTGAAACAGTTCGAACGCCATAAAAGC
TGTGATTTATCGATCACCGTGCGTAGGAACCAATAGCGTGAAGCGAAGCG
ATCTTCCCTGTTGTCCCCCCCTCCCCGTGGTCGTCCACTGTCCAACCGCC
AAGGCATGCAAATTATGAGTGTCCCCTCCCCCCCCGTTACGCCGAACAGG
TACGTCGGCGTGGGCATGCCCTCGAAAGCCGAAAGCGCCGCTCGTGCGGC
TGCTGCAGCGGGGGTGGAACCGGCACCGGCAGGCGGCGGCGTGAACGTTG
TCGCGGCCAGCGAGGCGGCCGGGGCGGCGGCGGCGGCGGCGGCAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6843:4604..6451+

>mRNA_Ecto-sp13_S_contig6843.17803.1 ID=mRNA_Ecto-sp13_S_contig6843.17803.1|Name=mRNA_Ecto-sp13_S_contig6843.17803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6843:4604..6451+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGAGGAGGCGTGTTGTCGAGGAGGGCGTCGGGGTCGATATTCGCCGA
CAGGGTCGGCATCACCAGGATTCCGGACCGGGCTTGGACTATCGCGCTTG
ACTACCTAGAGTTGGGCGAGGGCATGAGGTGCCGGCAGCTTGGGCGGGTC
TTCCGCGACACCGTTGAGGCCTCCCTGTCCGTGCTAGCCTTGTCCGGCGT
GAATACCATCACCTGGGCCACTCCAGACAACCTGGCCTTCCTCACACGGT
TCAAGAACGTGCGGACGTTGCACTGGTACGTCGGCGTGGGCATGCCCTCG
AAAGCCGAAAGCGCCGCTCGTGCGGCTGCTGCAGCGGGGGTGGAACCGGC
ACCGGCAGGCGGCGGCGTGAACGTTGTCGCGGCCAGCGAGGCGGCCGGGG
CGGCGGCGGCGGCGGCGGCAGCA
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