mRNA_Ecto-sp13_S_contig6704.17596.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6704.17596.1
Unique NamemRNA_Ecto-sp13_S_contig6704.17596.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6704.17596.1 vs. uniprot
Match: D8LN47_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN47_ECTSI)

HSP 1 Score: 716 bits (1849), Expect = 1.280e-249
Identity = 409/505 (80.99%), Postives = 426/505 (84.36%), Query Frame = 3 
Query:  225 MSSKIVPTTTVTT-GDSDDLTRERRSSRSLERLLSSVEGSTGLPSRPQSPLASWRASEVLSEPDSADGNASETGLEVGLPTTSGAG--VSLSCLASTATPLGRYQREADHSTRGGSIGDGHRVGSSLPNVVARGSGRDQLSLPPVGAAGYSALKPSATVSAPGPSSSXXXXXXXXXXXXGGKDKFVDTKADAVASAKLSQAALLQVSGAIGRGQAYEVADAKEEGEAGPEGRDKQTHLKLQTVGMLPGLTRPHVASYAEEHDQDISAEINSLSTIAAHEDVEEVTRFLLQHESTAKLAWDIVMMILIIFSSFVNPLKIGFDIPSRGALLVIEVLVDFAFIFYIGLTFRTTVMDPETKETITDVREISARQGQKMMGWFVLDVASSLPVALIAHTMDVTGQEIFFYMLKLLRTLKLHQLSVISTAVLQLFEDRDFNPSMFRIYIFVFTFVLVVHFIACGYWFVSRTMDPEFEGLWVPEQEYLDAALYEKYARALYFSLVITYGNDL 1730
            MSSK+VPTT  TT G+S DLT+ER SSRSLERLLSSVEGST LPS PQSPLASWRASEVLSEPD+ADGNASETGL             VSLS LASTATP  RYQREA HSTRG SIGDGHR+GSSLP VVARGSGR QLS PPV AAG SA+K S  VSAPGPSSS            GGK       ADAVASA LSQAALL+ SGAIGRG+  EVADAK       EGRDK+THL+LQTV MLP L RPHVASYAEEH+QDISAEINSLSTI+AHEDVEE TRFLLQHEST KL WDIVMMILIIFSSFVNPLKIGFDI SRGALLVIEVLVDF+FIF+IGLTFRTTVMD ETKETITDVREISAR+  K  GWFVLDVASSLPVALIAHT+DVTGQE FFYMLKLLRTLKLHQLSVISTAVLQ FEDRDFNPSMFRIYIFVFTFVLVVHFIACGYWFVSRT DPEFEGLWVPEQEYLDAALY+KY RALYFSLVITYGNDL
Sbjct:    1 MSSKVVPTTITTTPGESGDLTKERMSSRSLERLLSSVEGSTVLPSLPQSPLASWRASEVLSEPDAADGNASETGLXXXXXXXXXXXXXVSLSSLASTATPQERYQREAGHSTRGISIGDGHRMGSSLPKVVARGSGRHQLSSPPVSAAGNSAVKLSTLVSAPGPSSSEQAAATGVVTSSGGK-------ADAVASAMLSQAALLKASGAIGRGKECEVADAK------GEGRDKRTHLQLQTVAMLPILARPHVASYAEEHNQDISAEINSLSTISAHEDVEEGTRFLLQHESTGKLTWDIVMMILIIFSSFVNPLKIGFDITSRGALLVIEVLVDFSFIFHIGLTFRTTVMDTETKETITDVREISARRYLK--GWFVLDVASSLPVALIAHTVDVTGQENFFYMLKLLRTLKLHQLSVISTAVLQRFEDRDFNPSMFRIYIFVFTFVLVVHFIACGYWFVSRTTDPEFEGLWVPEQEYLDAALYKKYTRALYFSLVITYGNDL 490
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BLAST of mRNA_Ecto-sp13_S_contig6704.17596.1 vs. uniprot
Match: A0A6H5JQN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN9_9PHAE)

HSP 1 Score: 616 bits (1589), Expect = 2.830e-216
Identity = 342/423 (80.85%), Postives = 362/423 (85.58%), Query Frame = 3 
Query:  225 MSSKIVPTTTVTTGDSDDLTRERRSSRSLERLLSSVEGSTGLPSRPQSPLASWRASEVLSEPDSADGNASETGLEVGLPTTSGAGVSLSCLASTATPLGRYQREADHSTRGGSIGDGHRVGSSLPNVVARGSGRDQLSLPPVGAAGYSALKPSATVSAPGPSSSXXXXXXXXXXXXGGKDKFVDTKADAVASAKLSQAALLQVSGAIGRGQAYEVADAKEEGEAGPEGRDKQTHLKLQTVGMLPGLTRPHVASYAEEHDQDISAEINSLSTIAAHEDVEEVTRFLLQHESTAKLAWDIVMMILIIFSSFVNPLKIGFDIPSRGALLVIEVLVDFAFIFYIGLTFRTTVMDPETKETITDVREISARQGQK-----------------MMGWFVLDVASSLPVALIAHTMDVTGQEIFFYMLKL 1442
            MSSKIVPTT + TGDSDDLTRERRSSRSLERLLSS+EGSTGLPSRPQSPLASWRASE LSE D+ADGNASETGL +G+PT SGAGVSLS LASTATPL RYQREADHSTRGGSIGDGHR+GS LP VVARG GRDQ SLPPVGAAG SALKP+  VS+PGPSS             GGK+KFVD KADAVASA LS+   LQVSGAIGRG+AYE+ADA+ EG  GPEGRDKQ HLKLQTV MLPGLT+PHVASYAEEH QDISAEINSLSTI+AHEDV EVTRFLLQHESTAKLAWDIVMMILIIFSSFVNPLKIGFDI SRGALLVIEVLVDFAFIF+IG+TFRTTVMD ETKETITDVREISARQG+K                 + GWFVLDVASSLPVALIAHT+DVTGQE FFYMLKL
Sbjct:    1 MSSKIVPTTVIPTGDSDDLTRERRSSRSLERLLSSMEGSTGLPSRPQSPLASWRASEFLSELDTADGNASETGLGLGMPTASGAGVSLSSLASTATPLERYQREADHSTRGGSIGDGHRMGSPLPEVVARGWGRDQHSLPPVGAAGNSALKPTTIVSSPGPSS-LEQAAAAVVPSPGGKEKFVDAKADAVASAMLSKGVSLQVSGAIGRGKAYEMADARGEGRGGPEGRDKQAHLKLQTVAMLPGLTKPHVASYAEEHGQDISAEINSLSTISAHEDVGEVTRFLLQHESTAKLAWDIVMMILIIFSSFVNPLKIGFDIASRGALLVIEVLVDFAFIFHIGITFRTTVMDTETKETITDVREISARQGRKNDGLPCLVCVWARISAELRGWFVLDVASSLPVALIAHTVDVTGQETFFYMLKL 422
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BLAST of mRNA_Ecto-sp13_S_contig6704.17596.1 vs. uniprot
Match: A0A6H5JMZ2_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ2_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 7.730e-30
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 3 
Query: 1527 MFRIYIFVFTFVLVVHFIACGYWFVSRTMDPEFEGLWVPEQEYLDAALYEKYARALYFSLVITYGNDL 1730
            MFRIY+FVFTFVLVVHFIACGYWFVSRT DPEFEG+WVPEQEYLDA L+EKY RALYFSLVITYGNDL
Sbjct:    1 MFRIYMFVFTFVLVVHFIACGYWFVSRTTDPEFEGVWVPEQEYLDAGLFEKYTRALYFSLVITYGNDL 68
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BLAST of mRNA_Ecto-sp13_S_contig6704.17596.1 vs. uniprot
Match: A0A7S4DBZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBZ5_HETAK)

HSP 1 Score: 101 bits (252), Expect = 7.470e-19
Identity = 66/212 (31.13%), Postives = 112/212 (52.83%), Query Frame = 3 
Query: 1110 WDIVMMILIIFSSFVNPLKIGFDIPSRGALLVIEVLVDFAFIFYIGLTFRTTVMDPETKETITDVREISARQGQKMMGWFVLDVASSLPVALIAHTMDVTGQEIFFYMLKLLRTLKLHQLSVISTAVLQLFEDRDFNPSMFRIYIFVFTFVLVVHFIACGYWFVSRTM---DPEFEGLWVPEQEYLDAALYEKYARALYFSLVITYGNDLSE 1736
            W  +++   ++   V P+ I F+I S GAL  + +++D  FI  I + F TT  DP TKE + D++ IS      + G+F  D+  S+P   +      TG ++ F  +KLLRT+K+ +L + +   L   E +   P++FR+     +F +++HF+AC +WF+S       P FE +       L+ AL   YAR+ +FS+ +   N + E
Sbjct:   44 WSFLLIACTLYMLAVVPMDIAFEIGSIGALATLTLVMDMVFIADIIVNFLTTYRDPNTKEEVADLKRISRNY---LQGYFTADMLGSIPDIALTQIAVATGAKLTF--IKLLRTMKIFRL-LSANETLTAIEKKLRLPAIFRVVKISVSFFIIIHFMACTFWFISCDSYFDTPSFENVCTAAP--LEGAL-TPYARSFHFSMAVLTANPIGE 246
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BLAST of mRNA_Ecto-sp13_S_contig6704.17596.1 vs. uniprot
Match: UPI000B8CB237 (potassium channel KAT3 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CB237)

HSP 1 Score: 80.1 bits (196), Expect = 3.810e-12
Identity = 53/201 (26.37%), Postives = 107/201 (53.23%), Query Frame = 3 
Query: 1110 WDIVMMILIIFSSFVNPLKIGFDIPSRGALLVIEVLVDFAFIFYIGLTFRTTVMDPETKETITDVREISARQGQKMMGWFVLDVASSLPVALIAHTMDVTGQEIFFYMLKLLRTLKLHQLSVISTAVLQLFEDRDFNPSMFRIYIFVFTFVLVVHFIACGYWFVS-RTMDPEFEGLWVPEQEYLDAALYEKYARALYFSLV 1709
            W+  +++L+++S++  P ++ F+  + GAL+ I+++VDF F   I LTF    +D  T   + D ++I+ R  +++     +DVAS+LP   I     +TG+      L  L  L+L +L  +S    +L +D  F+  + R++  +   +  +H  AC Y++++     PE   + V   ++ D  ++  Y  ++Y+S+V
Sbjct:   62 WETFLVVLVVYSAWATPFELAFNRAATGALMYIDLVVDFFFAIDIVLTFFVGYLDKSTYVLVDDHKKIAIRYVKRLH--LPMDVASTLPFQFIYRI--ITGKNHQAQFLGFLNLLRLWRLRRVSALFKRLEKDTQFSYFITRLFKLLCVTIFTIHSAACIYFYLAAHYKTPEDTWIGVQVNDFKDRTIWLGYTYSMYWSIV 258
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6704.17596.1 vs. uniprot
Match: A0A251S905_HELAN (Potassium channel n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251S905_HELAN)

HSP 1 Score: 80.1 bits (196), Expect = 5.220e-12
Identity = 56/202 (27.72%), Postives = 102/202 (50.50%), Query Frame = 3 
Query: 1107 AWDIVMMILIIFSSFVNPLKIGFDIPSRGALLVIEVLVDFAFIFYIGLTFRTTVMDPETKETITDVREISARQGQKMMGWFVLDVASSLPVALIAHTMDVTGQEIFFYMLKLLRTLKLHQLSVISTAVLQLFEDRDFNPSMFRIYIFVFTFVLVVHFIAC-GYWFVSRTMDPEFEGLWVPEQEYLDAALYEKYARALYFSLV 1709
            AW++ +++L+I+S++++P  + F     GAL + + +V+  F   I LTF    +D +T   + D ++I+ R    +  WF+LDV+S++P   I         EI F   K+L  L+L +L  +S+   +L +D  FN    R    V+  +  VH   C  Y    R  DP    +      +   +++++Y  +LY+S+V
Sbjct:   59 AWEMFLVVLVIYSAWISPFDLAFLDKKEGALRIFDNIVNGFFAIDIVLTFFVAYLDSQTYALVDDHKKIAVRY---LSTWFILDVSSTVPFRSIILLCTHRKSEIGF---KILGMLRLWRLRRVSSLFARLEKDIRFNYFWIRCTKLVWVTLFAVHCAGCFNYLIADRYPDPNKTWIGAVYPNFKSESIWDRYVTSLYWSIV 254
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6704.17596.1 vs. uniprot
Match: A0A804IMN3_MUSAM (Potassium channel n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804IMN3_MUSAM)

HSP 1 Score: 77.4 bits (189), Expect = 2.950e-11
Identity = 61/227 (26.87%), Postives = 115/227 (50.66%), Query Frame = 3 
Query: 1062 EVTRFLLQHESTAKLAWDIVMMILIIFSSFVNPLKIGFDIPSRGALLVIEVLVDFAFIFYIGLTFRTTVMDPETKETITDVREISARQGQKMMGWFVLDVASSLPVALIAHTMD-VTGQEIFFYMLKLLRTLKLHQLSVISTAVLQLFEDRDFNPSMFRIYIFVFTFVLVVHFIACGYWFVS-RTMDPEFEGLWVPEQEYLDAALYEKYARALYFSLV----ITYGN 1724
            ++ RF++   +    AW+  +++L++++++ +P + GF   SRGAL +++ +VD  F   I LTF    +D  +   I   ++I+ R    +  WFVLD+AS++P+ ++   +    G   FF ML+L R      L  +S+   +L +DR FN    R        +  VH   C ++ V+ R  DP    +     ++   +L+ +Y  +LY+S+     + YG+
Sbjct:   53 KLRRFIVSPYARRYKAWETFLIVLVVYTAWASPFEFGFLERSRGALALVDNVVDALFAVDIVLTFFVAYVDKTSYLLIDSRKKIAWRY---LSTWFVLDLASTVPLEIVRRILPRKLGSYGFFTMLRLWR------LRRVSSLFARLEKDRKFNYFWVRCAKLTCVTLFAVHSAGCFFYLVAARYHDPSRTWIGASIPDFHVRSLWVRYVTSLYWSITTLSTVGYGD 270
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6704.17596.1 vs. uniprot
Match: A0A6I9RLW8_ELAGV (Potassium channel n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RLW8_ELAGV)

HSP 1 Score: 77.4 bits (189), Expect = 4.260e-11
Identity = 59/226 (26.11%), Postives = 114/226 (50.44%), Query Frame = 3 
Query: 1062 EVTRFLLQHESTAKLAWDIVMMILIIFSSFVNPLKIGFDIPSRGALLVIEVLVDFAFIFYIGLTFRTTVMDPETKETITDVREISARQGQKMMGWFVLDVASSLPVALIAHTMDVTGQEIFFYMLKLLRTLKLHQLSVISTAVLQLFEDRDFNPSMFRIYIFVFTFVLVVHFIACGYWFVS-RTMDPEFEGLWVPEQEYLDAALYEKYARALYFSLV----ITYGN 1724
            ++ RF++        +W+  ++IL+I+S++V+P + GF    +GAL V++ +V+  F   I LTF    +D  T   I D ++I+ +    +  WFVLDV S++P  L    +    +   F+       L+L +L  +S    +L +DR+FN    R    +   +  VH   C Y+ ++ R  +P    + V   ++ + +L+ +Y  ++Y+S+     + YG+
Sbjct:   51 KLRRFIVSPYERRYRSWETFLIILVIYSAWVSPFEFGFLEKEKGALPVMDNIVNGFFAVDIILTFFVAFIDRVTYLLIDDPKQIAWKY---ITSWFVLDVVSTIPTELARKILPPKLRSYGFF-----NMLRLWRLRRVSALFARLEKDRNFNYFWVRCVKLICVTLFAVHCAGCFYYLLAARNHNPSKTWIGVYMPDFHERSLWIRYVTSMYWSITTLTTVGYGD 268
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6704.17596.1 vs. uniprot
Match: A0A8J5FI41_ZINOF (Potassium channel n=5 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FI41_ZINOF)

HSP 1 Score: 77.0 bits (188), Expect = 4.290e-11
Identity = 57/216 (26.39%), Postives = 104/216 (48.15%), Query Frame = 3 
Query: 1062 EVTRFLLQHESTAKLAWDIVMMILIIFSSFVNPLKIGFDIPSRGALLVIEVLVDFAFIFYIGLTFRTTVMDPETKETITDVREISARQGQKMMGWFVLDVASSLPVALIAHTMDVTGQEIFFYMLKLLRTLKLHQLSVISTAVLQLFEDRDFNPSMFRIYIFVFTFVLVVHFIAC-GYWFVSRTMDPEFEGLWVPEQEYLDAALYEKYARALYFSL 1706
            ++ RF++        AW + +++L+I+S+++ P ++ F       LL IE +++  F   I LTF    +D ++   I D + I+ R  + +  WFV DV S+ P   I+      G ++ F   K+L  L+L +L  +S+   +L +D  FN  + R    V   +  VH   C  Y    R  DP    +      +  ++L+ +Y  A+Y+S+
Sbjct:   45 KLRRFMISPFDPRYRAWQMFLILLVIYSAWICPFELAFLRYLPAKLLWIENILNSFFAIDIVLTFFVACLDRKSYVLIDDPKRIAVRSYRYLSSWFVFDVLSTAPFEAISLLFRGNGNDLGF---KILNMLRLWRLRRVSSLFSRLEKDIRFNYFLTRCTKLVLVTLFAVHCAGCFNYLIADRYPDPRRTWIGATMPNFRSSSLWVRYVTAIYWSI 257
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6704.17596.1 vs. uniprot
Match: A0A178UXE7_ARATH (KC1 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178UXE7_ARATH)

HSP 1 Score: 75.9 bits (185), Expect = 6.630e-11
Identity = 59/224 (26.34%), Postives = 115/224 (51.34%), Query Frame = 3 
Query: 1074 FLLQHESTAKLAWDIVMMILIIFSSFVNPLKIGFDIPSRGALLVIEVLVDFAFIFYIGLTFRTTVMDPETKETITDVREISARQGQKMMGWFVLDVASSLPVALIAHTM--DVTGQEIFFYMLKLLRTLKLHQLSVISTAVLQLFEDRDFNPSMFRIYIFVFTFVLVVHFIACG-YWFVSRTMDPEFEGLWVPEQEYLDAALYEKYARALYFSLV----ITYGN 1724
            F++ H       W++ ++IL+ +S++ +  ++ F+  + GALL I+++VDF F   I LTF  + +D  T   +TD + I+ R  + +   FV+DVAS+LP+  I  T+  DV   + F +    L  L+L +L  ++    +L +D  FN  + R+   +   +  +H   C  YW       P    +    +++ + +++  Y  ++Y+S+V    + YG+
Sbjct:   77 FIVLHFDRRYRLWELFLVILVGYSAWASLFELAFEKAAEGALLTIDLVVDFFFAVDIILTFFVSYLDNTTYLNVTDHKLIAKRYLKSVA--FVMDVASTLPIQFIYKTITGDVGRGQAFGF----LNLLRLWRLRRVAELFKRLEKDAHFNYFVIRVIKLLCVTIFWIHLAGCILYWIAYHYPRPTDTWIGSQVEDFKERSVWLGYTYSMYWSIVTLTTVGYGD 294
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6704.17596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN47_ECTSI1.280e-24980.99Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5JQN9_9PHAE2.830e-21680.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMZ2_9PHAE7.730e-3091.18Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S4DBZ5_HETAK7.470e-1931.13Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI000B8CB2373.810e-1226.37potassium channel KAT3 n=1 Tax=Carica papaya TaxID... [more]
A0A251S905_HELAN5.220e-1227.72Potassium channel n=2 Tax=Helianthus annuus TaxID=... [more]
A0A804IMN3_MUSAM2.950e-1126.87Potassium channel n=1 Tax=Musa acuminata subsp. ma... [more]
A0A6I9RLW8_ELAGV4.260e-1126.11Potassium channel n=3 Tax=Arecaceae TaxID=4710 Rep... [more]
A0A8J5FI41_ZINOF4.290e-1126.39Potassium channel n=5 Tax=Zingiber officinale TaxI... [more]
A0A178UXE7_ARATH6.630e-1126.34KC1 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6704contigEcto-sp13_S_contig6704:1462..7505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score719.2
Seed ortholog evalue1.4e-204
Seed eggNOG ortholog2880.D8LN47
Model size1757
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
Ec32 ortholog descriptionCyclic nucleotide-binding-like
Ec32 orthologEc-05_003460.1
Cds size1533
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6704.17596.1prot_Ecto-sp13_S_contig6704.17596.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6704 2193..7505 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463922.1086602-UTR-Ecto-sp13_S_contig6704:1461..16241681463922.1086602-UTR-Ecto-sp13_S_contig6704:1461..1624Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6704 1462..1624 +
1681463922.1195047-UTR-Ecto-sp13_S_contig6704:2131..21921681463922.1195047-UTR-Ecto-sp13_S_contig6704:2131..2192Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6704 2132..2192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463922.1286104-CDS-Ecto-sp13_S_contig6704:2192..30051681463922.1286104-CDS-Ecto-sp13_S_contig6704:2192..3005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6704 2193..3005 +
1681463922.137753-CDS-Ecto-sp13_S_contig6704:3429..35621681463922.137753-CDS-Ecto-sp13_S_contig6704:3429..3562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6704 3430..3562 +
1681463922.1496372-CDS-Ecto-sp13_S_contig6704:4454..46241681463922.1496372-CDS-Ecto-sp13_S_contig6704:4454..4624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6704 4455..4624 +
1681463922.1635005-CDS-Ecto-sp13_S_contig6704:5352..54541681463922.1635005-CDS-Ecto-sp13_S_contig6704:5352..5454Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6704 5353..5454 +
1681463922.1766338-CDS-Ecto-sp13_S_contig6704:6044..61281681463922.1766338-CDS-Ecto-sp13_S_contig6704:6044..6128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6704 6045..6128 +
1681463922.1865027-CDS-Ecto-sp13_S_contig6704:6764..68441681463922.1865027-CDS-Ecto-sp13_S_contig6704:6764..6844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6704 6765..6844 +
1681463922.1962683-CDS-Ecto-sp13_S_contig6704:7354..75051681463922.1962683-CDS-Ecto-sp13_S_contig6704:7354..7505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6704 7355..7505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6704.17596.1

>prot_Ecto-sp13_S_contig6704.17596.1 ID=prot_Ecto-sp13_S_contig6704.17596.1|Name=mRNA_Ecto-sp13_S_contig6704.17596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=511bp
MSSKIVPTTTVTTGDSDDLTRERRSSRSLERLLSSVEGSTGLPSRPQSPL
ASWRASEVLSEPDSADGNASETGLEVGLPTTSGAGVSLSCLASTATPLGR
YQREADHSTRGGSIGDGHRVGSSLPNVVARGSGRDQLSLPPVGAAGYSAL
KPSATVSAPGPSSSEQAAAAVEEPPPGGKDKFVDTKADAVASAKLSQAAL
LQVSGAIGRGQAYEVADAKEEGEAGPEGRDKQTHLKLQTVGMLPGLTRPH
VASYAEEHDQDISAEINSLSTIAAHEDVEEVTRFLLQHESTAKLAWDIVM
MILIIFSSFVNPLKIGFDIPSRGALLVIEVLVDFAFIFYIGLTFRTTVMD
PETKETITDVREISARQGQKMMGWFVLDVASSLPVALIAHTMDVTGQEIF
FYMLKLLRTLKLHQLSVISTAVLQLFEDRDFNPSMFRIYIFVFTFVLVVH
FIACGYWFVSRTMDPEFEGLWVPEQEYLDAALYEKYARALYFSLVITYGN
DLSEGQILAR*
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mRNA from alignment at Ecto-sp13_S_contig6704:1462..7505+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6704.17596.1 ID=mRNA_Ecto-sp13_S_contig6704.17596.1|Name=mRNA_Ecto-sp13_S_contig6704.17596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6044bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6704:1462..7505+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTTGGCCCAGGGAAGGAGCACAGCGGTCGCACGTCGGCGAAAAATCG
GACCGAATAAAGGAAAGTGCTCTGTGGTGGTGAGGGCCTGGTGTTGGACG
CACTCCCGCTCTTGGTCTTGGCTGCGTTGTTTGGATGCACCGACAAACGC
CGTTGTCGACTCGGTAAGTCACTCCCAAATAAAATGTGGCGGGTACAATC
TCTGCCCCCATCCCTCTCTCGTTTACGGTTTATAGAGTGAAGATTCGGCC
ATGGACAATGCGGACATTGCGGGAGTTGGCCGAAATCGTCCAGTAGAGTG
CGAAATGCGAAGTTCCTTTTTGACTTCTTCAAAGCATTGAATATGCGGAA
CTCAAGCCTACATATCTCTGTATCTAGTCCATGTACAGCAGTATATACAT
TTGTTCACAGTACGTACAACAGTGTACAACGCCTTACTTATGATTTCGTA
GACTACATTTCGAAATGGCTGGCTGCCTTGCTGTTTAGCGTGCCATTGCT
TGCAACTGAACTGTGAATCGAAGGCACATACTGTGGAGGGTGAGCTCTGC
TACTGCTGCATTATGGTCTAATACTGCTGTAGCTAGAGTTGAGGTGCACA
ATCTAGCCTGACCGTCGCCTCAATTCTCCGATAGCATGGTATCGTGCACC
CCTCTCTACTGCCGTGCCAGTCCTTGAAGAAGGCTCGTGCGATCTCCGTC
CAGACGTCCGCGGCCGCACGCCTTGTACGCCATGTCTTCAAAGATAGTCC
CCACGACAACTGTTACCACTGGAGATAGCGATGATCTCACAAGAGAGAGA
AGGAGTTCGCGATCGCTCGAAAGACTTTTAAGCTCTGTGGAGGGCAGCAC
CGGGTTGCCATCCCGTCCTCAATCCCCCCTGGCTTCTTGGAGAGCCAGCG
AGGTCCTTTCAGAACCGGACTCAGCCGATGGGAATGCATCGGAGACAGGG
CTTGAGGTGGGGTTGCCAACAACGAGTGGGGCTGGGGTATCGCTATCTTG
CTTGGCATCTACGGCCACGCCACTGGGACGGTATCAACGGGAGGCTGACC
ATTCCACACGGGGGGGCTCGATCGGTGATGGACACCGTGTGGGCTCTTCC
CTACCAAATGTGGTTGCACGTGGTTCGGGGAGGGACCAACTCAGTTTGCC
ACCGGTTGGCGCTGCGGGGTACTCGGCGCTGAAGCCCAGCGCAACAGTCT
CGGCACCAGGACCGTCTTCATCGGAGCAAGCGGCAGCAGCAGTGGAAGAA
CCACCCCCCGGCGGGAAGGATAAATTTGTTGACACAAAGGCGGACGCTGT
TGCTTCAGCAAAATTGTCGCAAGCAGCGTTATTGCAGGTGTCGGGCGCAA
TCGGCCGTGGCCAAGCATATGAAGTGGCAGATGCCAAGGAAGAAGGTGAG
GCAGGGCCAGAGGGACGAGACAAGCAGACTCATCTCAAGCTGCAGACCGT
GGGCATGCTTCCTGGGTTAACGAGGCCGCACGTGGCGTCCTACGCCGAGG
AGCACGACCAAGACATTTCCGCAGAAATCAACTCTCTGTCAACGGTGCGG
TGAAGCGCTGAAGTCGCACGTCAACGGCACCTGTACGAATCAACCTACGC
TCCTTTTCCTACAACGCCTTCTGAAGAAAGGAGAGGTGTTTACGTGTCCA
TCACACGTTGTTTGCAGCTTTTTCTCAACATAGGTGTAGCTCAACTAGCC
AACTGTTTGTTTCAGCAGAAGCAAAACAGAGATGAAGCCGGAGCGATGGA
CGCTAGACGTTGCGCTTGTTGAGTCATTCGATTCGTTCACACCGCTCACA
GCCCCCACCTTGGCATGCCAACCAAGCCCAGATGTATCTATCCGTAATCA
TCGAGAACCAGATTGATCCACCAAGGTCTGCTCTATGTTGAGAATATCTT
TCATCCTCGACAGCGAACTCACCTGTTGGCGTGTTCACTGCGAACCTGAA
ATGGCTGCCGCAATACAGATAGCCGCTCACGAAGACGTCGAAGAGGTGAC
CCGCTTTCTTCTGCAGCACGAATCTACGGCAAAGCTGGCGTGGGACATTG
TCATGATGATCTTGATCATATTCTCGTCCTTCGTCAATCCCTTGAAGATT
GGTGAGGCAAAGAAGACCCGAATGTGTCCTGTTCTAATTTTTGTTGTTGT
TCCTGTCGTGGCTTTTCTTTCCTTCTTCGTGGTCTTGTTGGTCTGGACGC
TCTTGTTCTCGCCCTCGTCCTTGTCCTTGTACTTGCTCTTGCCCTTGCTC
TTGCGGTTCCTCTCTATTCCCTTCTTCGGCACCCGATGCAATCCATCAGA
TGGTTATGTTTGCTCAACACTTTCCCGTTTCGATGAACTAGAGCACTCGA
CACAGATACACCGAGAATTGACCCAAGGATGATTGCTTCATGTCCTGAAG
ACTTGGTTTGCACAGGTTGCCGGCCGAGATGGGTATATGAAAAGACACAA
CTTGAAATAGCACACCTTCGTGTAATGTTCAACAAGTGTCTCCAACGTCG
TACCTTTGCACAAGGTTGGATCCATAGGACTGTCAGCATGGAATGCCAGG
GGTGACCTGGAAGAAAGATAAGACCTCGGTCTTCGAAATAGGACGAGGAA
TGGATTTTCGGTCTTGTGCAACACGGACAAGAGTAGGCAGGCGCATGACC
AACCGACTTTGGGCGGCACCTCGCGTGACGTTCGTTCGTCAGGAGGTTCT
AGATGCACGTGCGGTTTTCTCGAGATGTCGTAGTGTCTCGTCGCACCCGT
GTCGAATTAGGTCCAGGGTTGCACTGCGTGAAAGCGTTTGACAATCAGCG
GAGTGTGGTGCTCCCGAGGTTCTCAAGACGTTTTCCTTCAGAGCCTGGGC
ACGGGTCTTCTTACCAGATAGTGCGTGCCATTGTCCGTACTTATCCCACA
TTCCACGATTGCCTGTCGAGAGTGACGTCTCGAAGCCGCGCTGCAAGTGA
TCGACACCTACTTTCGCTTCTCCGTGGCCGTCCCGATGGCCAGGATTTGA
CATTCCCTCTCGAGGAGCTCTTCTGGTTATCGAGGTGCTGGTCGATTTTG
CTTTCATCTTCTACATTGGACTCACCTTCCGGACTACGGTGATGGATCCT
GAAACCAAGGAAACCATCACAGATGTCCGAGAGATATCGGCAAGGCAAGG
GCAAAAAATGATGGTTTTTCCTATTTGGTGTCCCTTTGGGCTAAAGTTGG
TGCTGAGATCCGTGTGCGTGTGTTGAGAGAGAGAGAGAGAGGGAAAGAGG
GCGAGCGAGGAAAGATTTCATGGGGACGTTTGAGCGTTTCTGCTTCATTC
TCTTCACTTTTCGTTAGTTGTTTGCGTTGATGATGTTTTATCTTTTTCGT
GAGTTTCAAATTTGTACTTGTTTGCGATGTCATCTATCATTCCGCAACGC
CACCCAACACACCACTAAAGTCACTGCGGACTACAATCGACGCAAAACCC
TAGCGATCGTCTTCACCGACGGTAATGGGCACTGATACAATATTTTCAAT
TTTGTTCACGCTGAGATGACTGCGCCACGGCCGGTCTCATCCCGCTATCT
ATCCTCTTCCCACAACGTTCAGTACACGAGTGATAGCAACGGTCAGCAAA
GAAACGCAACCCTTGTTGCGAGCGGAGTAGCTAAATGTCTCGCCCGCATC
GAGGTGTTGTGATCGGTAAATATCTCCATCGCCCGAGCCCGTACGTGTCA
TCCCAGGCAAAGACTTGGACCTCGAGATACCTCGGACCATCCATCAAAGG
AGCACTACTTTCGCGCCCACCCCATGCTCCATGCTCTACAATATATTGAC
CCGCGTGCACAAGCGCATACGTCACTGCACCGTCCGTTTCTGCCACGTGT
TCGCTTTGCGCGACACCCCCCCGAAAAAAAGATATTTGAAGGGTTGGTTC
GTCCTAGATGTGGCGAGCTCGCTGCCGGTAGCGTTGATTGCCCATACTAT
GGACGTCACCGGCCAAGAGATCTTCTTCTACATGCTCAAGCTGGTGAGTC
TGCGGCTGGGCCCTGCCTCCCCCACCGCCCTTTCCCTGGTCATCTGACAT
TGGCGTTCACACAACCGAGTTGTGTGCAGCCAGGCTCCACGAAGTTTCCT
CGTTCAAGTGTGGCTCACGCCGATGATGCTCTTCTGCTGAGCTACGGAAC
GTAACTCCGAGGATGTCGCGCGACACAACCAATCGCTGTAGTAGTTGAGG
ATACTTCCCTTTGCTGGGGCATGCCCGCCCAAGGAACTCTTCTGGGCGAT
GACCAGTCAAAACTCGTACGTGGGAGTCAGAACGCAAACATCGATGTATT
ACTTGGAACATAGGGAAAGCTACGGATGGGCACCCCGCTGTACTACATCC
ATCGACGCTTTCTCGGTCCCAACCCCGACGTTCGCTGGGCAAACCCTCGA
TTTAATTCGAAGGTCAAGGCGTTCCGAGGATATTTTCTGAAACGTTGATT
CATGAACGGCAGTGCCTATGATGCTTGGTTGACTCACCCCACCGACCTTC
TCGTCCAACGTTTGCGAGATGTTTGAACGTGTCAAGCCGCTGTTCGGCGG
TGCGTCGTTTGTTTTCTAACCAATATGACCCAGTTGCGAACGCTCAAGCT
CCACCAGCTCTCGGTGATATCCACTGCGGTTCTGCAGCTGTTCGAGGACA
GGGATTTCAATCCTTCGGTGAGATATCGTATTACACTCGTGCAAGTTGCG
AACTTCTGTCTTTGTTGCTAAAGTTGATTTTGCAGTGTTTTGGGGCGGAT
TGGTTTTATCGCTGGATCTCGTCCATCACACGGGGGGAGGGAGGAGAAGA
GATAAATACAACATGAGAGGGGCGTGACCAGACGACGAGATCAGGTATCG
GATCCTTTCATAGACTTGTTGAGCGCGGAACTTCATGTTGGACGACTCAA
ACCGTGCTCGACCTTGCTCGGCGTACCGACGAAGTCTAGGACATATGGTA
GTGGGAGGACCACAGCGTGCTTGGAAGGCGTTGGACAAGTTGTTGCGCAC
GAACCGAACGTAGCAGCACTACTTCATAACACTAGTGATATCAACGAATG
ATATCAACGACGACGGGTGCAAGTGCTTTCATTCTCATCGAGGGATGGAG
ATTCTACCGCTGTGAAACTTTGGGTTGTGTTTTGTGCGGTGGGAAAATGA
CGGTAGTTTCACGACGCAGCAGCTTAGAATTTGGCATCGATTTCACGCGA
ATACGCCCCGTCCGGCTCTCCGTGAGTCTGTTGGCCTCTGTTTGCCGACG
TTCTCTCTCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCGCTGCGCATCG
AAGATGTTCCGCATCTACATTTTCGTCTTCACGTTTGTGCTAGTGGTGCA
CTTTATTGCCTGCGGCTATTGGTTTGTGTCCAGGTGAGGAAAATTTCGAA
AAAACACCAGCCAAGTCCTCCCGCACCCTCTTGAAAATCCCGAACAGTAG
CTCTCATGGCAAGTGAATGGCGTTGACTATATCAGAGCGTGGCACTAGTC
CGCCCCGAAGGACTGCGAATGACAACAGGGTAAATGGGGTGTCCACAGAG
GTAGACACAGTATATGCAGCTTATGGTTCGTTTCGGTTTGTCATGTGAGG
TGACACGAGCGCAGAAAAACCAGGACGGGTCGGCAGGCACGCCACATTCT
GTACCGACGGGGAAATGCTGTTTCGTTTTCTTTACTGGACAAACCCCGAG
GCACGTGACAGCTTCACTTCACAAAGGCGAACTGTTGCACAACAAACAAT
ATTCGGGACCGTGACGGGATAGTACAGCAAGAGGCAGTAGACTGTTTAGG
TAGCGTCATATTGTCAAACTTCCTGGCGCTTCAAAAGGGAAAAAAAAGTG
GTAATGACAAGCACCGTGAAACTCCATTCACCCACGTTCGCAGAACAATG
GACCCAGAGTTTGAGGGGCTCTGGGTCCCGGAGCAGGAGTACCTGGACGC
CGCCTTATACGAAAAGTATGCCCGGGCTCTGTACTTCTCCCTCGTCATCA
CCTACGGAAACGACTTAAGTGAGGGACAAATATTGGCGCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6704:1462..7505+

>mRNA_Ecto-sp13_S_contig6704.17596.1 ID=mRNA_Ecto-sp13_S_contig6704.17596.1|Name=mRNA_Ecto-sp13_S_contig6704.17596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1533bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6704:1462..7505+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTCAAAGATAGTCCCCACGACAACTGTTACCACTGGAGATAGCGA
TGATCTCACAAGAGAGAGAAGGAGTTCGCGATCGCTCGAAAGACTTTTAA
GCTCTGTGGAGGGCAGCACCGGGTTGCCATCCCGTCCTCAATCCCCCCTG
GCTTCTTGGAGAGCCAGCGAGGTCCTTTCAGAACCGGACTCAGCCGATGG
GAATGCATCGGAGACAGGGCTTGAGGTGGGGTTGCCAACAACGAGTGGGG
CTGGGGTATCGCTATCTTGCTTGGCATCTACGGCCACGCCACTGGGACGG
TATCAACGGGAGGCTGACCATTCCACACGGGGGGGCTCGATCGGTGATGG
ACACCGTGTGGGCTCTTCCCTACCAAATGTGGTTGCACGTGGTTCGGGGA
GGGACCAACTCAGTTTGCCACCGGTTGGCGCTGCGGGGTACTCGGCGCTG
AAGCCCAGCGCAACAGTCTCGGCACCAGGACCGTCTTCATCGGAGCAAGC
GGCAGCAGCAGTGGAAGAACCACCCCCCGGCGGGAAGGATAAATTTGTTG
ACACAAAGGCGGACGCTGTTGCTTCAGCAAAATTGTCGCAAGCAGCGTTA
TTGCAGGTGTCGGGCGCAATCGGCCGTGGCCAAGCATATGAAGTGGCAGA
TGCCAAGGAAGAAGGTGAGGCAGGGCCAGAGGGACGAGACAAGCAGACTC
ATCTCAAGCTGCAGACCGTGGGCATGCTTCCTGGGTTAACGAGGCCGCAC
GTGGCGTCCTACGCCGAGGAGCACGACCAAGACATTTCCGCAGAAATCAA
CTCTCTGTCAACGATAGCCGCTCACGAAGACGTCGAAGAGGTGACCCGCT
TTCTTCTGCAGCACGAATCTACGGCAAAGCTGGCGTGGGACATTGTCATG
ATGATCTTGATCATATTCTCGTCCTTCGTCAATCCCTTGAAGATTGGATT
TGACATTCCCTCTCGAGGAGCTCTTCTGGTTATCGAGGTGCTGGTCGATT
TTGCTTTCATCTTCTACATTGGACTCACCTTCCGGACTACGGTGATGGAT
CCTGAAACCAAGGAAACCATCACAGATGTCCGAGAGATATCGGCAAGGCA
AGGGCAAAAAATGATGGGTTGGTTCGTCCTAGATGTGGCGAGCTCGCTGC
CGGTAGCGTTGATTGCCCATACTATGGACGTCACCGGCCAAGAGATCTTC
TTCTACATGCTCAAGCTGTTGCGAACGCTCAAGCTCCACCAGCTCTCGGT
GATATCCACTGCGGTTCTGCAGCTGTTCGAGGACAGGGATTTCAATCCTT
CGATGTTCCGCATCTACATTTTCGTCTTCACGTTTGTGCTAGTGGTGCAC
TTTATTGCCTGCGGCTATTGGTTTGTGTCCAGAACAATGGACCCAGAGTT
TGAGGGGCTCTGGGTCCCGGAGCAGGAGTACCTGGACGCCGCCTTATACG
AAAAGTATGCCCGGGCTCTGTACTTCTCCCTCGTCATCACCTACGGAAAC
GACTTAAGTGAGGGACAAATATTGGCGCGGTGA
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