mRNA_Ecto-sp13_S_contig65990.17442.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65990.17442.1
Unique NamemRNA_Ecto-sp13_S_contig65990.17442.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65990.17442.1 vs. uniprot
Match: D7FGX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX0_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 5.140e-33
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    4 QADGFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHLAKTAMDAAGSL 201
            +ADGFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGH+AKTAMDAAGSL
Sbjct:  177 EADGFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHVAKTAMDAAGSL 242
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BLAST of mRNA_Ecto-sp13_S_contig65990.17442.1 vs. uniprot
Match: A0A6H5JEV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV9_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.430e-32
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    4 QADGFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHLAKTAMDAAGSL 201
            +A+GFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHLAKTAMDAAG+L
Sbjct:  182 EANGFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHLAKTAMDAAGAL 247
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BLAST of mRNA_Ecto-sp13_S_contig65990.17442.1 vs. uniprot
Match: A0A2R5G2X0_9STRA (Nucleolar protein 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2X0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.310e-13
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   10 DGFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHLAKT 177
            +  DV GS+LL ++ KPS  VDLA+RMP++C   +D LNHRYLDKR LY G LAK+
Sbjct:  192 EAVDVVGSYLLGTVTKPSRTVDLAIRMPADCFKRKDYLNHRYLDKRRLYLGVLAKS 247
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BLAST of mRNA_Ecto-sp13_S_contig65990.17442.1 vs. uniprot
Match: L1JNQ1_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JNQ1_GUITC)

HSP 1 Score: 64.7 bits (156), Expect = 1.460e-10
Identity = 27/52 (51.92%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   19 DVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHLAK 174
            ++ GSFLLR+L KP LNVD+A+ MP++C+ ++D LN R++ KR +Y  H+AK
Sbjct:  170 ELVGSFLLRTLVKPDLNVDMAVEMPADCLHAKDFLNGRFMYKRNMYLSHIAK 221
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BLAST of mRNA_Ecto-sp13_S_contig65990.17442.1 vs. uniprot
Match: A0A444CCS9_ENSVE (Nrap domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444CCS9_ENSVE)

HSP 1 Score: 61.2 bits (147), Expect = 1.700e-9
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   10 DGFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHLAKT 177
            +   V GS+ +RS+AKP +NVDL +RMP EC   +D LNHRY  KR LY   + K+
Sbjct:   72 ESIQVGGSYSIRSVAKPDINVDLLVRMPKECFHEKDYLNHRYHAKRLLYLRVIEKS 127
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BLAST of mRNA_Ecto-sp13_S_contig65990.17442.1 vs. uniprot
Match: A0A427APH3_ENSVE (Nrap domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427APH3_ENSVE)

HSP 1 Score: 60.8 bits (146), Expect = 3.250e-9
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   10 DGFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALY 156
            +   V GS+ +RS+AKP +NVDL +RMP EC   +D LNHRY  KR LY
Sbjct:  261 ESIQVGGSYSIRSVAKPDINVDLLVRMPKECFHEKDYLNHRYHAKRLLY 309
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BLAST of mRNA_Ecto-sp13_S_contig65990.17442.1 vs. uniprot
Match: A0A7S3ZGA4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZGA4_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 3.460e-9
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   22 VAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHLAK 174
            V GS++LR +AKP  NVDLAL +PS+ ++ +D LN++YL KRA YA  +A+
Sbjct:   22 VVGSYILRVVAKPVTNVDLALEIPSDSLMQKDYLNYKYLAKRARYAEAVAE 72
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BLAST of mRNA_Ecto-sp13_S_contig65990.17442.1 vs. uniprot
Match: A0A803Q1Y2_CANSA (Uncharacterized protein n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A803Q1Y2_CANSA)

HSP 1 Score: 60.5 bits (145), Expect = 4.550e-9
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   16 FDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALY 156
            F++ GS+ ++ +AKP +NVDL LR+P EC   +D LNHRY  KR LY
Sbjct:   71 FEIGGSYSIKCIAKPDINVDLFLRLPKECFHEKDYLNHRYHGKRCLY 117
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BLAST of mRNA_Ecto-sp13_S_contig65990.17442.1 vs. uniprot
Match: A0A0M0JU12_9EUKA (Nucleolar protein 6 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JU12_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 5.090e-9
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   19 DVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHLAKTAMDAAGSL 201
            D+ GS+LLR++  P LNVD+A+ +P+   + +D L+ RY DKR LY  HLA     AA S+
Sbjct:  112 DLVGSYLLRTVTAPELNVDVAVELPASMFLEKDYLDQRYADKRLLYLTHLAHLLSTAAASV 172
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BLAST of mRNA_Ecto-sp13_S_contig65990.17442.1 vs. uniprot
Match: B9ST37_RICCO (Nucleolar RNA-associated protein, putative n=2 Tax=Ricinus communis TaxID=3988 RepID=B9ST37_RICCO)

HSP 1 Score: 60.1 bits (144), Expect = 6.230e-9
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   16 FDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHLAKTAMDAAGS 198
            F++ GS+ ++ +AKPS+NVDL L +P EC   +D LNHRY  KR LY   + K  M ++ S
Sbjct:   77 FEIRGSYSIKCIAKPSINVDLFLHLPKECFHEKDYLNHRYHAKRFLYLCMVKKYLMKSSSS 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65990.17442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGX0_ECTSI5.140e-3396.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEV9_9PHAE2.430e-3295.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5G2X0_9STRA5.310e-1358.93Nucleolar protein 6 n=1 Tax=Hondaea fermentalgiana... [more]
L1JNQ1_GUITC1.460e-1051.92Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A444CCS9_ENSVE1.700e-950.00Nrap domain-containing protein n=1 Tax=Ensete vent... [more]
A0A427APH3_ENSVE3.250e-955.10Nrap domain-containing protein n=1 Tax=Ensete vent... [more]
A0A7S3ZGA4_9EUKA3.460e-952.94Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A803Q1Y2_CANSA4.550e-953.19Uncharacterized protein n=4 Tax=Cannabis sativa Ta... [more]
A0A0M0JU12_9EUKA5.090e-945.90Nucleolar protein 6 n=1 Tax=Chrysochromulina tobin... [more]
B9ST37_RICCO6.230e-945.90Nucleolar RNA-associated protein, putative n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65990contigEcto-sp13_S_contig65990:545..745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score129.4
Seed ortholog evalue6.2e-28
Seed eggNOG ortholog2880.D7FGX0
Preferred nameNOL6
Model size201
KEGG koko:K08018,ko:K14544
KEGG Pathwayko03008,ko04010,ko04015,ko04530,map03008,map04010,map04015,map04530
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030628,GO:0030684,GO:0030686,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0089701,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons1
EggNOG free text desc.tRNA export from nucleus
EggNOG OGsKOG2054@1,KOG2054@2759
Cds size201
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463909.101833-CDS-Ecto-sp13_S_contig65990:544..7451681463909.101833-CDS-Ecto-sp13_S_contig65990:544..745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65990 545..745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65990.17442.1prot_Ecto-sp13_S_contig65990.17442.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65990 545..745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65990.17442.1

>prot_Ecto-sp13_S_contig65990.17442.1 ID=prot_Ecto-sp13_S_contig65990.17442.1|Name=mRNA_Ecto-sp13_S_contig65990.17442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
VQADGFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRA
LYAGHLAKTAMDAAGSL
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mRNA from alignment at Ecto-sp13_S_contig65990:545..745+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65990.17442.1 ID=mRNA_Ecto-sp13_S_contig65990.17442.1|Name=mRNA_Ecto-sp13_S_contig65990.17442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65990:545..745+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTACAGGCGGATGGCTTCGACGTCGCCGGGAGTTTCTTGCTCCGTTCTCT
GGCCAAGCCGAGCTTAAACGTCGACCTAGCTCTCCGCATGCCCTCGGAGT
GCATCGTGTCGAGAGACTCGTTGAACCACCGGTACTTGGACAAGAGGGCT
CTTTACGCAGGACACCTTGCGAAGACGGCAATGGACGCTGCGGGGTCGTT
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65990:545..745+

>mRNA_Ecto-sp13_S_contig65990.17442.1 ID=mRNA_Ecto-sp13_S_contig65990.17442.1|Name=mRNA_Ecto-sp13_S_contig65990.17442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65990:545..745+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTACAGGCGGATGGCTTCGACGTCGCCGGGAGTTTCTTGCTCCGTTCTCT
GGCCAAGCCGAGCTTAAACGTCGACCTAGCTCTCCGCATGCCCTCGGAGT
GCATCGTGTCGAGAGACTCGTTGAACCACCGGTACTTGGACAAGAGGGCT
CTTTACGCAGGACACCTTGCGAAGACGGCAATGGACGCTGCGGGGTCGTT
G
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