mRNA_Ecto-sp13_S_contig6585.17418.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6585.17418.1
Unique NamemRNA_Ecto-sp13_S_contig6585.17418.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6585.17418.1 vs. uniprot
Match: A0A6H5L6H2_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H2_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 3.570e-66
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 1 
Query:    1 ASIYPGVDGGCVSSDPPWLSSHRTIANRRRSSTDFDNNVGEDGGGDATIDADIRLVFAGKDLQRGRPLLGYGLHAESTVHILGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAK 354
            ASIYPG DGGCVSSDPPWLSSHRT ANRRRSSTD D NVGEDGGGDATIDADIRLVFAGKDLQ+GRPLLGYGL A+STVH+LGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAK
Sbjct:   36 ASIYPGADGGCVSSDPPWLSSHRTRANRRRSSTDCDKNVGEDGGGDATIDADIRLVFAGKDLQKGRPLLGYGLQADSTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAK 153
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BLAST of mRNA_Ecto-sp13_S_contig6585.17418.1 vs. uniprot
Match: D7FVY5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY5_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 7.350e-63
Identity = 107/118 (90.68%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:    1 ASIYPGVDGGCVSSDPPWLSSHRTIANRRRSSTDFDNNVGEDGGGDATIDADIRLVFAGKDLQRGRPLLGYGLHAESTVHILGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAK 354
            A+IYPG DGGCVSSDPPWLSS RTIAN+RRSSTDFD +VGEDGGGD  IDADIRLVFAGKDLQRGRPLLGYGL A+STVH+LGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAK
Sbjct:   48 ANIYPGADGGCVSSDPPWLSSQRTIANKRRSSTDFDKHVGEDGGGDTIIDADIRLVFAGKDLQRGRPLLGYGLQADSTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAK 165
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BLAST of mRNA_Ecto-sp13_S_contig6585.17418.1 vs. uniprot
Match: A0A835ZEY8_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.740e-14
Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:  139 ATIDADIRLVFAGKDLQRGRPLLGYGLHAESTVHILGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAK 354
            AT D D  LVFAGK +     L  YGL   ST+H+LGRLRGGAQLGKVVKGRSQVKKK   K K++ +LQAK
Sbjct:   23 ATADGDCCLVFAGKCMVPDVSLEEYGLQEGSTIHVLGRLRGGAQLGKVVKGRSQVKKKDG-KSKDFGDLQAK 93
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BLAST of mRNA_Ecto-sp13_S_contig6585.17418.1 vs. uniprot
Match: B0R193_DANRE (Ubiquitin B n=1 Tax=Danio rerio TaxID=7955 RepID=B0R193_DANRE)

HSP 1 Score: 48.5 bits (114), Expect = 4.650e-5
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:  160 RLVFAGKDLQRGRPLLGYGLHAESTVHILGRLRGGAQL 273
            RL+FAGK L+ GR L  Y +  EST+H++ RLRGGAQ+
Sbjct:   42 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAQI 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6585.17418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L6H2_9PHAE3.570e-6693.22Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D7FVY5_ECTSI7.350e-6390.68Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A835ZEY8_9STRA4.740e-1463.89Flagellar associated protein n=1 Tax=Tribonema min... [more]
B0R193_DANRE4.650e-557.89Ubiquitin B n=1 Tax=Danio rerio TaxID=7955 RepID=B... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6585contigEcto-sp13_S_contig6585:4497..5609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score216.1
Seed ortholog evalue8.9e-54
Seed eggNOG ortholog2880.D7FVY5
Preferred nameCCDC65
Model size356
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003352,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0032879,GO:0032886,GO:0034622,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0051270,GO:0060271,GO:0060632,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons2
EggNOG free text desc.regulation of cilium movement
EggNOG OGs2CMHW@1,2QQDD@2759
Cds size354
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463907.101381-CDS-Ecto-sp13_S_contig6585:4496..47961681463907.101381-CDS-Ecto-sp13_S_contig6585:4496..4796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6585 4497..4796 +
1681463907.1138813-CDS-Ecto-sp13_S_contig6585:5555..56091681463907.1138813-CDS-Ecto-sp13_S_contig6585:5555..5609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6585 5556..5609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6585.17418.1prot_Ecto-sp13_S_contig6585.17418.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6585 4497..5609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6585.17418.1

>prot_Ecto-sp13_S_contig6585.17418.1 ID=prot_Ecto-sp13_S_contig6585.17418.1|Name=mRNA_Ecto-sp13_S_contig6585.17418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
ASIYPGVDGGCVSSDPPWLSSHRTIANRRRSSTDFDNNVGEDGGGDATID
ADIRLVFAGKDLQRGRPLLGYGLHAESTVHILGRLRGGAQLGKVVKGRSQ
VKKKGAEKPKEYAELQAK
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mRNA from alignment at Ecto-sp13_S_contig6585:4497..5609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6585.17418.1 ID=mRNA_Ecto-sp13_S_contig6585.17418.1|Name=mRNA_Ecto-sp13_S_contig6585.17418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1113bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6585:4497..5609+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCAGCATCTACCCAGGAGTGGACGGCGGTTGCGTCTCCTCCGACCCACC
ATGGCTTTCATCGCACAGGACCATCGCGAATAGGAGACGCTCATCCACAG
ATTTTGACAACAATGTAGGGGAGGACGGTGGAGGTGATGCTACTATCGAC
GCCGATATTCGCCTGGTCTTTGCGGGCAAGGATCTACAGAGGGGACGGCC
TCTACTGGGATACGGTCTCCACGCTGAAAGCACCGTACACATTCTCGGTA
GACTCAGGGGAGGGGCTCAACTCGGAAAGGTGGTCAAGGGCCGAAGCCAG
GTGGGAATATTAATATTTATTGTTTCCGAGCATCAGTGCAACATACCGTA
GATTGCATAAGATACCATCCGCTGGACCGGTTTCGAAAGCTCACAATTGC
TCCTAAAAAACAGCGACGGTGACGAAAATGGCGGCGTTGGAATCGTCTTT
TCGAGTGCGTTCTAGCATTTTGTTACGTGGTTTTGGAATTCTCTTGGTCG
TGGAGAAATAGAGCCTCGAAATCAGGATGTGTGGTAACTTATGAAACCTA
CGTTAGTCCTTGTATTCAATGCATATTCGGAGCATTTTTTCGCCAATAAT
ACGGCTGTTCTCTCCATACCCCGTCAACGAGTAAGCTGCGGTTCTGTACG
TCGTTTAGCTGCTATGTACTCCGAAGTCGTTGGTCCAGTCCATTGACACC
ACCATAAAAGTCTTTTCTGCGAGACGAAGGCAATTTTGATCGGCAAGCCT
GACTTTCGGGGATAAGCACATGCTAATTGACCGGCCTCTGTCGAGGGAGA
CAGGCGTTTTTCGGAACGCGTTACTATTCTCTCTTGGTTCACTATTTCAG
CCACCTTGTCCAAGAAAGCCTCAAGCTGTTCTCTCCCATGCGAATTCTGA
ACTGTCTTCACGACCCACCCAAACGACTTACCTTCACCAAGCGACATGTC
AGTCCCAATTGTTGAGCATGTTGTCCGGGGTTTGTTACCTCGAGTGGTCA
CGCTCAGCGAACGCCATTTAGATCCTCATAATCGTTTGTCCAACCAAATT
TCGGTACAGGTGAAAAAAAAAGGCGCCGAGAAACCTAAGGAATACGCAGA
GCTGCAGGCCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6585:4497..5609+

>mRNA_Ecto-sp13_S_contig6585.17418.1 ID=mRNA_Ecto-sp13_S_contig6585.17418.1|Name=mRNA_Ecto-sp13_S_contig6585.17418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6585:4497..5609+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCAGCATCTACCCAGGAGTGGACGGCGGTTGCGTCTCCTCCGACCCACC
ATGGCTTTCATCGCACAGGACCATCGCGAATAGGAGACGCTCATCCACAG
ATTTTGACAACAATGTAGGGGAGGACGGTGGAGGTGATGCTACTATCGAC
GCCGATATTCGCCTGGTCTTTGCGGGCAAGGATCTACAGAGGGGACGGCC
TCTACTGGGATACGGTCTCCACGCTGAAAGCACCGTACACATTCTCGGTA
GACTCAGGGGAGGGGCTCAACTCGGAAAGGTGGTCAAGGGCCGAAGCCAG
GTGAAAAAAAAAGGCGCCGAGAAACCTAAGGAATACGCAGAGCTGCAGGC
CAAG
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