mRNA_Ecto-sp13_S_contig6573.17401.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6573.17401.1
Unique NamemRNA_Ecto-sp13_S_contig6573.17401.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6573.17401.1 vs. uniprot
Match: D8LJW2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW2_ECTSI)

HSP 1 Score: 387 bits (993), Expect = 8.360e-135
Identity = 193/197 (97.97%), Postives = 195/197 (98.98%), Query Frame = 1 
Query:    1 VFGVEAVVFPVSNPYAPGVPVRTFHDPSARRATARGVLVNPAEGDVDQRGSSGISAAGLPSYTSSLLPIRFTNEEVQLNEGCLFRVHIDADWVETDVIAIEFRLLTTPLPENDAAPTEDVIAPAGATVAPDKKPITLKEVGKVTLHTKCASSKGGLHRYHPLVFKQPHLCVVDITLHMALTSVNHPGGPAGLAAAIA 591
            VFGVEAVVFPVSNPYAPGVPVRTFHDPSARR+TARGVLVNPAEGDVDQRGSSGISAAGLPSYTSSLLPIRFTNEEVQLNEGCLFRVHIDADWVETDVIAIEFRLLTTPLPENDAAPTEDVIA AGATV P+KKPITLKEVGKVTLHTKCASSKGGLHRYHPLVFKQPHLCVVDITLHMALTSVNHPGGPAGLAAAIA
Sbjct:   13 VFGVEAVVFPVSNPYAPGVPVRTFHDPSARRSTARGVLVNPAEGDVDQRGSSGISAAGLPSYTSSLLPIRFTNEEVQLNEGCLFRVHIDADWVETDVIAIEFRLLTTPLPENDAAPTEDVIAAAGATVTPEKKPITLKEVGKVTLHTKCASSKGGLHRYHPLVFKQPHLCVVDITLHMALTSVNHPGGPAGLAAAIA 209
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BLAST of mRNA_Ecto-sp13_S_contig6573.17401.1 vs. uniprot
Match: A0A6H5K5V1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5V1_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.260e-28
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:  532 MALTSVNHPGGPAGLAAAIAANAFPSEEVGAPPAPRGGESPARRASSASLSTPPRSEGRRRSVSGREL 735
            MALTSV HPGGPAGLAAAIAANAFPSEEVGAPPAPRGGESPARRASSASLSTPPRSEGRRRSVSGREL
Sbjct:    1 MALTSVTHPGGPAGLAAAIAANAFPSEEVGAPPAPRGGESPARRASSASLSTPPRSEGRRRSVSGREL 68
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BLAST of mRNA_Ecto-sp13_S_contig6573.17401.1 vs. uniprot
Match: A0A7R9YF49_9STRA (Hypothetical protein n=4 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF49_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.800e-6
Identity = 34/124 (27.42%), Postives = 62/124 (50.00%), Query Frame = 1 
Query:  181 SYTSSLLPIRFTNEEVQLNEGCLFRVHIDADWVETDVIAIEFRLLTTPLPEN-DAAPTEDVIAPAGATVAPDKKPITLKEVGKVTLHTKCASSKGGLHRYHPLVFKQPHLCVVDITLHMALTSV 549
            SY + ++PIR+ +E V+LNEG  F++   AD  +TD   +   L   P  +  ++    D+I P         + + +++V +            GLH ++P+ F   HLC V++T H  +T++
Sbjct:   81 SYVTRVIPIRYRDETVELNEGAHFQLTFPADQADTDA-ELHVALFFCPFVKGVESRSLADLIPPQPQFECVATQRLLIRQVAR------------GLHAFYPVTFDDMHLCEVEMTFHTLVTNL 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6573.17401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJW2_ECTSI8.360e-13597.97Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K5V1_9PHAE3.260e-2898.53Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7R9YF49_9STRA7.800e-627.42Hypothetical protein n=4 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6573contigEcto-sp13_S_contig6573:1393..3899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size739
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_009890.1
Cds size735
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463905.63107-CDS-Ecto-sp13_S_contig6573:1394..15951681463905.63107-CDS-Ecto-sp13_S_contig6573:1394..1595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6573 1395..1595 -
1681463905.6417434-CDS-Ecto-sp13_S_contig6573:1901..20181681463905.6417434-CDS-Ecto-sp13_S_contig6573:1901..2018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6573 1902..2018 -
1681463905.6515772-CDS-Ecto-sp13_S_contig6573:2842..30401681463905.6515772-CDS-Ecto-sp13_S_contig6573:2842..3040Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6573 2843..3040 -
1681463905.6607144-CDS-Ecto-sp13_S_contig6573:3680..38991681463905.6607144-CDS-Ecto-sp13_S_contig6573:3680..3899Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6573 3681..3899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6573.17401.1prot_Ecto-sp13_S_contig6573.17401.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6573 1395..3899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6573.17401.1

>prot_Ecto-sp13_S_contig6573.17401.1 ID=prot_Ecto-sp13_S_contig6573.17401.1|Name=mRNA_Ecto-sp13_S_contig6573.17401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
VFGVEAVVFPVSNPYAPGVPVRTFHDPSARRATARGVLVNPAEGDVDQRG
SSGISAAGLPSYTSSLLPIRFTNEEVQLNEGCLFRVHIDADWVETDVIAI
EFRLLTTPLPENDAAPTEDVIAPAGATVAPDKKPITLKEVGKVTLHTKCA
SSKGGLHRYHPLVFKQPHLCVVDITLHMALTSVNHPGGPAGLAAAIAANA
FPSEEVGAPPAPRGGESPARRASSASLSTPPRSEGRRRSVSGREL
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mRNA from alignment at Ecto-sp13_S_contig6573:1393..3899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6573.17401.1 ID=mRNA_Ecto-sp13_S_contig6573.17401.1|Name=mRNA_Ecto-sp13_S_contig6573.17401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6573:1393..3899- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTTCGGCGTAGAAGCGGTGGTGTTCCCGGTGTCGAACCCGTACGCGCC
CGGAGTGCCGGTTCGGACGTTCCATGACCCTTCGGCGAGGCGTGCCACCG
CGCGAGGCGTTTTGGTCAACCCGGCGGAGGGGGATGTCGACCAGCGGGGG
TCGTCCGGGATAAGCGCGGCGGGGCTGCCGTCGTACACGTCGAGCCTTTT
GCCGATACGGTTCACGAATGTAAGAGCGAGAGAGAGGGGGGGGGGAGGGG
GGCGGCAGGGGGGGAGGAAAAGAGAATGAGACAGAGGGGGGAGGAGGGGG
GGCACGAGGGGGCGTACTCTTGTGTTTTGCATGACTTAGCGGTTAGACCA
TTGGCTACTCGAGAGGACGGAGAAATATTCCGACAGGAAAGATCGCCGAT
GGCCAATCGTTCCCTCTTACTTGCTAAAGGTGGTGGTGGGGGCGGGAGGG
TTCAAGAATTGCTCCTAACCGAAAACACCCGCCAGGCATGCCGTCCTTTG
GCACGGCTGTTTTGTGGTGAGATTTTTTTCTGGTAAATAGCAATCTTCTC
TAGCGAGTCGAATACGCCGCTGTGGGTTTGATGTAGTGAATGGAACCACT
TGCAGTAGGCGGCCTCTCCCCGATACGAGTGAATCCGTGCTGACGTTTCA
GGCGGATAGATTTAATCGTGGAAAAAGGAAGAGCAGTCGTTTTGACTTGA
GTCCGTCATCGGCCCGCATCCACGACACGCAAGCTTTCACGAACGAGTAT
GCCCGTAACCCCCCTTCCCCCCCCCCCGAAGGCAAGCAACAATCCACGTT
TCCCCCCCGACTGACAATCGCCTCCTCATCCATACAATACCACCACCAAA
ACGGAGTAGGAAGAAGTGCAGCTGAACGAGGGCTGCCTGTTTCGGGTGCA
TATCGACGCGGACTGGGTGGAGACCGACGTCATCGCCATCGAGTTCCGCC
TGCTGACCACCCCGCTGCCGGAGAACGACGCTGCACCTACGGAGGATGTT
ATCGCCCCTGCAGGGGCCACCGTTGCTCCTGACAAGAAACCGATCACACT
CAAAGAGGTAGGGGGGAGGGGGGGGGCATACTCATGGTTTTGCTTGCCTT
TCTTGTTCGACCGAGAGGACGGAGCATTGTTCCCACGGGACCGATGGTTG
GTAGGGGGGGGTGGGGGGCATTGGAGTGCCCCCCGTGTATATACAGATGC
AAGACGGCGATTATTTCGAGGAAAAGTGTTGTGCATTTGGACAAATTCCA
TTATCTTCGCTTCTCCTCTGTAGTACAGGTATTTGGGGATGTTCCAGCAG
TGCGGCGTCATTCTTCTTTTTTTTTGGTCCAGCGGCGCCCTGTTGGTGTG
GTATGTGCATGACAGGGGGATGTTTTAGTAGTGTGTCGTGCTTTCTTGTG
TTGTTCATGTTTCTGTTTTCATCACTCAGCGGTGCCTTTGGTGGTGCGGA
TTAGCGAAAACAAGGGGGAACCGCACGGATTGCTGACCGGATGTGCGATG
TGCGTGGTGATGTGGCGGTGAAGTTATGTACCGGTGTGCACCACCGTTGT
GAATTCGCCATCGCATGGCTTGGTTGGTTCCGTCTGACTTCGCCCCGACT
GCAACGATAATGTTCGTTGCGATCTCTAGACGAGAATCTCTCGCCGAGTC
TCAACCGGGAGATCCACCTCCTCGGATTTCATCCGCAAACACATGAACAG
TCACGTTCGTTTCCAACGAACGCACTCTCTCTGCTTCTCAATCGTTTTAG
CCTTGTTTTCATCGAGTTTCGCGCTTGCTTGTCTCATGTGTCAGACAGTG
TAGAAACCGGAGGAGCCACCCACCGCGGCTTTCACATGAACAATTCACGT
CCGTTCGTTTCCGACGAAACGAAACTAACAGGTGGGAAAGGTTACGCTAC
ACACAAAGTGCGCATCCTCGAAAGGTGGCCTTCACCGCTACCACCCCCTC
GTCTTCAAGCAGCCGCACCTGTGCGTGGTTGACATCACGCTGCACATGGT
GAGATTCTCGCTCTCGTTGTGGGTTTTGGCACGAGATCGAGCTACGCACG
AAGAGCAGTAGATGCTCCCCAGGCTACTTGCTCGTAGGCTCGAGTACACC
GGTGATGTGGAGTACATGGGTATCCTGCTTTGGCTACCTTTTCAGTGTCT
CTTGTCTTGAAGCATGCTGTGAAACAACCTCTTCATGTCAAATGCGTTGC
GACTTACTGGTACTTGACCGCCGGGGGCAGCAAGTAGCTTGGTCACCAGC
CCGAACCTCTCCCCCCCACCCCCACCCGTGCCATTTTCCATACGTCGAGG
GCAGGCGCTCACCTCCGTCAACCACCCGGGGGGGCCCGCGGGTCTCGCCG
CAGCCATCGCCGCCAACGCGTTCCCTTCGGAAGAGGTCGGCGCACCCCCG
GCGCCGCGCGGCGGGGAGTCTCCCGCTCGGCGCGCCAGCTCGGCGTCGCT
GTCCACCCCTCCCCGAAGCGAAGGCCGCAGGAGATCGGTGTCCGGCAGGG
AGCTGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6573:1393..3899-

>mRNA_Ecto-sp13_S_contig6573.17401.1 ID=mRNA_Ecto-sp13_S_contig6573.17401.1|Name=mRNA_Ecto-sp13_S_contig6573.17401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6573:1393..3899- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTTCGGCGTAGAAGCGGTGGTGTTCCCGGTGTCGAACCCGTACGCGCC
CGGAGTGCCGGTTCGGACGTTCCATGACCCTTCGGCGAGGCGTGCCACCG
CGCGAGGCGTTTTGGTCAACCCGGCGGAGGGGGATGTCGACCAGCGGGGG
TCGTCCGGGATAAGCGCGGCGGGGCTGCCGTCGTACACGTCGAGCCTTTT
GCCGATACGGTTCACGAATGAAGAAGTGCAGCTGAACGAGGGCTGCCTGT
TTCGGGTGCATATCGACGCGGACTGGGTGGAGACCGACGTCATCGCCATC
GAGTTCCGCCTGCTGACCACCCCGCTGCCGGAGAACGACGCTGCACCTAC
GGAGGATGTTATCGCCCCTGCAGGGGCCACCGTTGCTCCTGACAAGAAAC
CGATCACACTCAAAGAGGTGGGAAAGGTTACGCTACACACAAAGTGCGCA
TCCTCGAAAGGTGGCCTTCACCGCTACCACCCCCTCGTCTTCAAGCAGCC
GCACCTGTGCGTGGTTGACATCACGCTGCACATGGCGCTCACCTCCGTCA
ACCACCCGGGGGGGCCCGCGGGTCTCGCCGCAGCCATCGCCGCCAACGCG
TTCCCTTCGGAAGAGGTCGGCGCACCCCCGGCGCCGCGCGGCGGGGAGTC
TCCCGCTCGGCGCGCCAGCTCGGCGTCGCTGTCCACCCCTCCCCGAAGCG
AAGGCCGCAGGAGATCGGTGTCCGGCAGGGAGCTG
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