mRNA_Ecto-sp13_S_contig6547.17363.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6547.17363.1
Unique NamemRNA_Ecto-sp13_S_contig6547.17363.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6547.17363.1 vs. uniprot
Match: D8LHJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ0_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.450e-24
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 YQEIMFEKFGVPAEFMSKDAVLACFSLGRTTASLVDVGGDSAVVTPVYDG 150
            Y ++MF+KFGVPAEFMSKDAVLACFS+GRTTASLVDVGGD AVVTPVYDG
Sbjct:    3 YTDMMFDKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDIAVVTPVYDG 52
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6547.17363.1 vs. uniprot
Match: D8LHI8_ECTSI (Protein binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI8_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.830e-23
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 YQEIMFEKFGVPAEFMSKDAVLACFSLGRTTASLVDVGGDSAVVTPVYDG 150
            Y EIMFEKFGVPAEFMSKDAVLACFS+GRTTASLVDVGGDSAVVTPVYDG
Sbjct:  173 YTEIMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDSAVVTPVYDG 222
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6547.17363.1 vs. uniprot
Match: A0A6H5KHN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN4_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.330e-19
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 YQEIMFEKFGVPAEFMSKDAVLACFSLGRTTASLVDVGGDSAVVTPVYDG 150
            Y E+MFE+FGVPAEF+SKD VL CFS+GRTTASLVDVGGDSAV TPV+DG
Sbjct:  229 YTEMMFEEFGVPAEFVSKDGVLPCFSIGRTTASLVDVGGDSAVATPVFDG 278
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6547.17363.1 vs. uniprot
Match: D8LHJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ1_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 5.790e-16
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 YQEIMFEKFGVPAEFMSKDAVLACFSLGRTTASLVDVGGDSA 126
            Y E++ E+FGVPAEFMSKDAVLACFS+GRTTASLVDVGG +A
Sbjct:    3 YTEMILEEFGVPAEFMSKDAVLACFSIGRTTASLVDVGGGTA 44
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6547.17363.1 vs. uniprot
Match: A0A835Z589_9STRA (Actin family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z589_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.640e-12
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    4 QEIMFEKFGVPAEFMSKDAVLACFSLGRTTASLVDVGGDSAVVTPVYDG 150
            QE+MFEKF VPA FM +DAVL+CFSLG+TT + VDVGG + V TPV DG
Sbjct:  109 QELMFEKFDVPALFMGRDAVLSCFSLGKTTGTAVDVGGHTTV-TPVTDG 156
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6547.17363.1 vs. uniprot
Match: A0A7S3UN21_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UN21_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 2.050e-11
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    7 EIMFEKFGVPAEFMSKDAVLACFSLGRTTASLVDVGGDSAVVTPVYDG 150
            EI FEK+ VPA F+SKDAVL+CF+ GRTT  + DVG + A VTPV DG
Sbjct:   99 EIWFEKYDVPALFISKDAVLSCFAAGRTTGLVADVGAELATVTPVSDG 146
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6547.17363.1 vs. uniprot
Match: A0A7S0VUY7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VUY7_9CRYP)

HSP 1 Score: 63.5 bits (153), Expect = 1.290e-10
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    7 EIMFEKFGVPAEFMSKDAVLACFSLGRTTASLVDVGGDSAVVTPVYDG 150
            EIMFEK+ VPA F+SK+AVL+ FS GR+TA ++D GG S  V+PV+DG
Sbjct:   36 EIMFEKYKVPAVFVSKNAVLSAFSCGRSTAVVLDSGGGSTCVSPVHDG 83
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6547.17363.1 vs. uniprot
Match: B8CAA7_THAPS (Actin related protein centractin-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAA7_THAPS)

HSP 1 Score: 63.5 bits (153), Expect = 1.690e-10
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    7 EIMFEKFGVPAEFMSKDAVLACFSLGRTTASLVDVGGDSAVVTPVYDG 150
            EI+FE   +PA F  +DAV AC+++GRTTA++VDVG  S +VTPVY+G
Sbjct:   73 EILFETHNLPATFFLRDAVAACYAVGRTTATVVDVGYSSTMVTPVYEG 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6547.17363.1 vs. uniprot
Match: A0A7S3HMC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMC5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.970e-10
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    7 EIMFEKFGVPAEFMSKDAVLACFSLGRTTASLVDVGGDSAVVTPVYDG 150
            E MFEK+ VPA F+SKDAVLA ++ G+T   ++DVG    VVTPV DG
Sbjct:   52 ETMFEKYSVPAFFLSKDAVLASYACGKTGGLVIDVGASGTVVTPVQDG 99
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6547.17363.1 vs. uniprot
Match: A0A2H2ICF7_CAEJA (Uncharacterized protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2ICF7_CAEJA)

HSP 1 Score: 61.2 bits (147), Expect = 1.140e-9
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    7 EIMFEKFGVPAEFMSKDAVLACFSLGRTTASLVDVGGDSAVVTPVYDG 150
            E+MFEKF VPA ++SK+AVL+CF+ GRT   +VD G     V PVYDG
Sbjct:  144 ELMFEKFQVPAYYLSKNAVLSCFAQGRTHGLMVDSGATQTSVVPVYDG 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6547.17363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHJ0_ECTSI1.450e-2488.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHI8_ECTSI1.830e-2396.00Protein binding protein, putative n=2 Tax=Ectocarp... [more]
A0A6H5KHN4_9PHAE1.330e-1982.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHJ1_ECTSI5.790e-1680.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z589_9STRA1.640e-1269.39Actin family n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S3UN21_HETAK2.050e-1164.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0VUY7_9CRYP1.290e-1062.50Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
B8CAA7_THAPS1.690e-1058.33Actin related protein centractin-like protein n=1 ... [more]
A0A7S3HMC5_9STRA6.970e-1058.33Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A2H2ICF7_CAEJA1.140e-958.33Uncharacterized protein n=1 Tax=Caenorhabditis jap... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6547contigEcto-sp13_S_contig6547:2207..2359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score95.1
Seed ortholog evalue9.1e-18
Seed eggNOG ortholog2880.D8LHI8
Preferred nameACTL6A
Model size153
KEGG koko:K05692,ko:K11340,ko:K11400,ko:K11652,ko:K11767
KEGG Pathwayko04015,ko04145,ko04210,ko04390,ko04391,ko04510,ko04520,ko04530,ko04611,ko04670,ko04714,ko04745,ko04810,ko04919,ko04921,ko05100,ko05110,ko05130,ko05131,ko05132,ko05164,ko05205,ko05225,ko05410,ko05412,ko05414,ko05416,ko05418,map04015,map04145,map04210,map04390,map04391,map04510,map04520,map04530,map04611,map04670,map04714,map04745,map04810,map04919,map04921,map05100,map05110,map05130,map05131,map05132,map05164,map05205,map05225,map05410,map05412,map05414,map05416,map05418
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000123,GO:0000228,GO:0000278,GO:0000281,GO:0000785,GO:0000790,GO:0000812,GO:0000902,GO:0000904,GO:0000910,GO:0001654,GO:0003407,GO:0003674,GO:0003682,GO:0003712,GO:0003713,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006464,GO:0006473,GO:0006475,GO:0006508,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007423,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016358,GO:0016514,GO:0016569,GO:0016570,GO:0016573,GO:0016579,GO:0016586,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0021510,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031011,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031493,GO:0031498,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032984,GO:0032986,GO:0032989,GO:0032990,GO:0032991,GO:0033202,GO:0033554,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035060,GO:0035267,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042393,GO:0042766,GO:0043010,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0043981,GO:0043982,GO:0043983,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051382,GO:0051383,GO:0051716,GO:0060041,GO:0060147,GO:0060148,GO:0060255,GO:0060303,GO:0060964,GO:0060966,GO:0060968,GO:0061640,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0070646,GO:0070647,GO:0070925,GO:0070983,GO:0071564,GO:0071565,GO:0071704,GO:0071824,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097346,GO:0097458,GO:0097485,GO:0097659,GO:0120036,GO:0120039,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:1904949,GO:1990234,GO:2000112,GO:2000637,GO:2001141
Exons1
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0679@2759
Cds size141
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03029,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463902.5840364-CDS-Ecto-sp13_S_contig6547:2206..23471681463902.5840364-CDS-Ecto-sp13_S_contig6547:2206..2347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6547 2207..2347 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463902.6101203-UTR-Ecto-sp13_S_contig6547:2347..23591681463902.6101203-UTR-Ecto-sp13_S_contig6547:2347..2359Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6547 2348..2359 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6547.17363.1prot_Ecto-sp13_S_contig6547.17363.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6547 2207..2347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6547.17363.1

>prot_Ecto-sp13_S_contig6547.17363.1 ID=prot_Ecto-sp13_S_contig6547.17363.1|Name=mRNA_Ecto-sp13_S_contig6547.17363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
MFEKFGVPAEFMSKDAVLACFSLGRTTASLVDVGGDSAVVTPVYDG*
back to top

mRNA from alignment at Ecto-sp13_S_contig6547:2207..2359-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6547.17363.1 ID=mRNA_Ecto-sp13_S_contig6547.17363.1|Name=mRNA_Ecto-sp13_S_contig6547.17363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6547:2207..2359- (Ectocarpus species13 EcNAP12_S_4_19m)
TATCAGGAAATTATGTTCGAGAAGTTCGGCGTTCCGGCGGAGTTCATGTC
GAAAGACGCGGTGCTTGCGTGCTTCTCCCTTGGTCGGACGACGGCGTCGC
TGGTAGACGTGGGGGGGGACAGCGCCGTAGTGACCCCGGTCTACGACGGG
TGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6547:2207..2359-

>mRNA_Ecto-sp13_S_contig6547.17363.1 ID=mRNA_Ecto-sp13_S_contig6547.17363.1|Name=mRNA_Ecto-sp13_S_contig6547.17363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6547:2207..2359- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGAGAAGTTCGGCGTTCCGGCGGAGTTCATGTCGAAAGACGCGGT
GCTTGCGTGCTTCTCCCTTGGTCGGACGACGGCGTCGCTGGTAGACGTGG
GGGGGGACAGCGCCGTAGTGACCCCGGTCTACGACGGGTGA
back to top