mRNA_Ecto-sp13_S_contig652.17327.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig652.17327.1
Unique NamemRNA_Ecto-sp13_S_contig652.17327.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig652.17327.1 vs. uniprot
Match: D8LLC4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC4_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 3.600e-81
Identity = 134/161 (83.23%), Postives = 136/161 (84.47%), Query Frame = 1 
Query:    7 EVYRACLDVVPHKSFTFAKIWLMLAKFEVRHKDLQAARKVLGQAIGMCPKEKLFKGYVQLERDLGEIDRCRKVYRRCLEAFPSDCGVWAQFAALEGSVGETERSRAVFELAIRQPVLDMPETLWKAYIDFEVGMGVGPDGEHTGQLFERLLERTQHVKVCV 489
            EVYRACLDVVPHKSFTFAKIWLMLAKFEVRHKDLQAARKVLGQAIGMCPKEKLFKGYVQLERDLGEIDRCRKVY +CLEAFPSDCGVWAQFAALEGSVGETERSRAVFELAIRQPVLDMPETLWK                       RLLERTQHVKV +
Sbjct:  385 EVYRACLDVVPHKSFTFAKIWLMLAKFEVRHKDLQAARKVLGQAIGMCPKEKLFKGYVQLERDLGEIDRCRKVYSKCLEAFPSDCGVWAQFAALEGSVGETERSRAVFELAIRQPVLDMPETLWKXXXXXXXXXXXXXXXXXXXX---RLLERTQHVKVWI 542
[Close]
BLAST of mRNA_Ecto-sp13_S_contig652.17327.1 vs. uniprot
Match: A0A1B0FNJ0_GLOMM (Uncharacterized protein n=1 Tax=Glossina morsitans morsitans TaxID=37546 RepID=A0A1B0FNJ0_GLOMM)

HSP 1 Score: 211 bits (538), Expect = 4.780e-65
Identity = 98/161 (60.87%), Postives = 124/161 (77.02%), Query Frame = 1 
Query:    7 EVYRACLDVVPHKSFTFAKIWLMLAKFEVRHKDLQAARKVLGQAIGMCPKEKLFKGYVQLERDLGEIDRCRKVYRRCLEAFPSDCGVWAQFAALEGSVGETERSRAVFELAIRQPVLDMPETLWKAYIDFEVGMGVGPDGEHTGQLFERLLERTQHVKVCV 489
            ++YR CL+++PHK FTF+KIWL+ A+FE+R KDL  ARK LG AIGMCP++KLF+GY++LE  L E DRCR +Y + LE  P +C  W +FA LE  +G+TERSR ++ELAI+QP LDMPE LWKAYIDFEV  G   + E   QL+ERLLERTQHVKV +
Sbjct:   63 QIYRTCLELIPHKKFTFSKIWLLYAQFEIRCKDLNKARKTLGMAIGMCPRDKLFRGYIELEIQLREFDRCRLLYEKFLEYGPENCATWMKFAELENLLGDTERSRGIYELAIQQPRLDMPELLWKAYIDFEVSQG---ESELARQLYERLLERTQHVKVWI 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig652.17327.1 vs. uniprot
Match: A0A2R5GAY3_9STRA (Pre-mRNA-splicing factor clf1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAY3_9STRA)

HSP 1 Score: 212 bits (539), Expect = 5.560e-62
Identity = 98/160 (61.25%), Postives = 123/160 (76.88%), Query Frame = 1 
Query:   10 VYRACLDVVPHKSFTFAKIWLMLAKFEVRHKDLQAARKVLGQAIGMCPKEKLFKGYVQLERDLGEIDRCRKVYRRCLEAFPSDCGVWAQFAALEGSVGETERSRAVFELAIRQPVLDMPETLWKAYIDFEVGMGVGPDGEHTGQLFERLLERTQHVKVCV 489
            VYR CLD +PHK FTF+KIW++ A+ E+R KDL AARK+LG+AIG CP++K+FK Y+ LE  LG +DRCR +Y + LE  P +C VW ++AALE SVGET RSRA+FELAI QPVLDMPETLWK YIDFE+ +       +  +L+ERLLERT HVKV +
Sbjct:  417 VYRRCLDCIPHKIFTFSKIWILAAQLEIRDKDLTAARKLLGEAIGRCPRDKIFKMYLNLELQLGNVDRCRSIYEKYLEFAPQNCLVWERYAALEHSVGETRRSRAIFELAINQPVLDMPETLWKRYIDFEIKIDTTKSRANARKLYERLLERTDHVKVWI 576
[Close]
BLAST of mRNA_Ecto-sp13_S_contig652.17327.1 vs. uniprot
Match: A0A834FKI2_ORYME (Crooked neck-like protein 1 n=3 Tax=Ovalentaria TaxID=1489908 RepID=A0A834FKI2_ORYME)

HSP 1 Score: 209 bits (533), Expect = 1.440e-61
Identity = 99/161 (61.49%), Postives = 124/161 (77.02%), Query Frame = 1 
Query:    7 EVYRACLDVVPHKSFTFAKIWLMLAKFEVRHKDLQAARKVLGQAIGMCPKEKLFKGYVQLERDLGEIDRCRKVYRRCLEAFPSDCGVWAQFAALEGSVGETERSRAVFELAIRQPVLDMPETLWKAYIDFEVGMGVGPDGEHTGQLFERLLERTQHVKVCV 489
            +VY+ACLD++PHK FTFAKIWL+ A+FE+R K LQAARKV+G AIG CPK KL KGY++LE  L E DRCRK+Y + LE  P +C  W +FA LE  +G+ ERSRA+FELAI QP LDMPE LWK+YIDFE+      + E+T  L++RLL+RTQHVKV +
Sbjct:  394 QVYQACLDLIPHKKFTFAKIWLLFAQFEIRQKSLQAARKVMGTAIGKCPKNKLLKGYIELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETILGDVERSRAIFELAIGQPRLDMPEVLWKSYIDFEIEQ---EEFENTRNLYKRLLQRTQHVKVWI 551
[Close]
BLAST of mRNA_Ecto-sp13_S_contig652.17327.1 vs. uniprot
Match: A0A1B0FPF4_GLOMM (Uncharacterized protein n=9 Tax=Glossina TaxID=7393 RepID=A0A1B0FPF4_GLOMM)

HSP 1 Score: 210 bits (535), Expect = 1.480e-61
Identity = 98/161 (60.87%), Postives = 124/161 (77.02%), Query Frame = 1 
Query:    7 EVYRACLDVVPHKSFTFAKIWLMLAKFEVRHKDLQAARKVLGQAIGMCPKEKLFKGYVQLERDLGEIDRCRKVYRRCLEAFPSDCGVWAQFAALEGSVGETERSRAVFELAIRQPVLDMPETLWKAYIDFEVGMGVGPDGEHTGQLFERLLERTQHVKVCV 489
            ++YR CL+++PHK FTF+KIWL+ A+FE+R KDL  ARK LG AIGMCP++KLF+GY++LE  L E DRCR +Y + LE  P +C  W +FA LE  +G+TERSR ++ELAI+QP LDMPE LWKAYIDFEV  G   + E   QL+ERLLERTQHVKV +
Sbjct:  390 QIYRTCLELIPHKKFTFSKIWLLYAQFEIRCKDLNKARKTLGMAIGMCPRDKLFRGYIELEIQLREFDRCRLLYEKFLEYGPENCVTWMKFAELENLLGDTERSRGIYELAIQQPRLDMPELLWKAYIDFEVSQG---ESELARQLYERLLERTQHVKVWI 547
[Close]
BLAST of mRNA_Ecto-sp13_S_contig652.17327.1 vs. uniprot
Match: A0A3B3DWB2_ORYME (Crooked neck pre-mRNA splicing factor 1 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3DWB2_ORYME)

HSP 1 Score: 209 bits (533), Expect = 7.080e-61
Identity = 99/161 (61.49%), Postives = 124/161 (77.02%), Query Frame = 1 
Query:    7 EVYRACLDVVPHKSFTFAKIWLMLAKFEVRHKDLQAARKVLGQAIGMCPKEKLFKGYVQLERDLGEIDRCRKVYRRCLEAFPSDCGVWAQFAALEGSVGETERSRAVFELAIRQPVLDMPETLWKAYIDFEVGMGVGPDGEHTGQLFERLLERTQHVKVCV 489
            +VY+ACLD++PHK FTFAKIWL+ A+FE+R K LQAARKV+G AIG CPK KL KGY++LE  L E DRCRK+Y + LE  P +C  W +FA LE  +G+ ERSRA+FELAI QP LDMPE LWK+YIDFE+      + E+T  L++RLL+RTQHVKV +
Sbjct:  394 QVYQACLDLIPHKKFTFAKIWLLFAQFEIRQKSLQAARKVMGTAIGKCPKNKLLKGYIELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETILGDVERSRAIFELAIGQPRLDMPEVLWKSYIDFEIEQ---EEFENTRNLYKRLLQRTQHVKVWI 551
[Close]
BLAST of mRNA_Ecto-sp13_S_contig652.17327.1 vs. uniprot
Match: A0A7S2FY15_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FY15_9STRA)

HSP 1 Score: 199 bits (505), Expect = 9.320e-61
Identity = 98/177 (55.37%), Postives = 123/177 (69.49%), Query Frame = 1 
Query:   16 RACLDVVPHKSFTFAKIWLMLAKFEVRHKDLQAARKVLGQAIGMCPK---EKLFKGYVQLERDLGEIDRCRKVYRRCLEAFPSDCGVWAQFAALEGSVGETERSRAVFELAIRQPVLDMPETLWKAYIDFEV----------------GMGVGPDGEHTGQLFERLLERTQHVKVCV 489
            + CL V+PH+ F+F KIW+M A FEVR +D+ AARKV+GQAIG C K   EK FK Y+ LER LGE+DRCR +Y + LEA P++C  W +FAALE ++GET RSRAVFE+A+ QPVLDMPE LWKAYIDFE+                G   G  G+   +L+ RLL+RT+HVKV V
Sbjct:    1 KKCLAVIPHEEFSFTKIWVMYAHFEVRQRDVTAARKVMGQAIGRCAKLGKEKPFKEYIHLERQLGEVDRCRTLYTKYLEAVPTNCAAWGRFAALESALGETARSRAVFEIAVNQPVLDMPEALWKAYIDFEIEQAKAIINGEADEDEEGEAPGEPGDRVRELYNRLLDRTKHVKVWV 177
[Close]
BLAST of mRNA_Ecto-sp13_S_contig652.17327.1 vs. uniprot
Match: A0A3S2LKX8_ORYJA (Uncharacterized protein n=1 Tax=Oryzias javanicus TaxID=123683 RepID=A0A3S2LKX8_ORYJA)

HSP 1 Score: 209 bits (531), Expect = 1.340e-60
Identity = 98/161 (60.87%), Postives = 125/161 (77.64%), Query Frame = 1 
Query:    7 EVYRACLDVVPHKSFTFAKIWLMLAKFEVRHKDLQAARKVLGQAIGMCPKEKLFKGYVQLERDLGEIDRCRKVYRRCLEAFPSDCGVWAQFAALEGSVGETERSRAVFELAIRQPVLDMPETLWKAYIDFEVGMGVGPDGEHTGQLFERLLERTQHVKVCV 489
            +VY+ACLD++PHK FTFAKIWL+ A+FE+R K+LQAARK++G AIG CPK KL KGY++LE  L E DRCRK+Y + LE  P +C  W +FA LE  +G+ ERSRA+FELAI QP LDMPE LWK+YIDFE+      + E+T  L++RLL+RTQHVKV +
Sbjct:  394 QVYQACLDLMPHKKFTFAKIWLLFAQFEIRQKNLQAARKIMGTAIGKCPKNKLLKGYIELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETILGDVERSRAIFELAIGQPRLDMPEVLWKSYIDFEIEQ---EEFENTRNLYKRLLQRTQHVKVWI 551
[Close]
BLAST of mRNA_Ecto-sp13_S_contig652.17327.1 vs. uniprot
Match: A0A3B3IGK4_ORYLA (Crooked neck pre-mRNA splicing factor 1 n=8 Tax=Oryzias TaxID=8089 RepID=A0A3B3IGK4_ORYLA)

HSP 1 Score: 209 bits (531), Expect = 1.360e-60
Identity = 98/161 (60.87%), Postives = 125/161 (77.64%), Query Frame = 1 
Query:    7 EVYRACLDVVPHKSFTFAKIWLMLAKFEVRHKDLQAARKVLGQAIGMCPKEKLFKGYVQLERDLGEIDRCRKVYRRCLEAFPSDCGVWAQFAALEGSVGETERSRAVFELAIRQPVLDMPETLWKAYIDFEVGMGVGPDGEHTGQLFERLLERTQHVKVCV 489
            +VY+ACLD++PHK FTFAKIWL+ A+FE+R K+LQAARK++G AIG CPK KL KGY++LE  L E DRCRK+Y + LE  P +C  W +FA LE  +G+ ERSRA+FELAI QP LDMPE LWK+YIDFE+      + E+T  L++RLL+RTQHVKV +
Sbjct:  394 QVYQACLDLMPHKKFTFAKIWLLFAQFEIRQKNLQAARKIMGTAIGKCPKNKLLKGYIELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETILGDVERSRAIFELAIGQPRLDMPEVLWKSYIDFEIEQ---EEFENTRNLYKRLLQRTQHVKVWI 551
[Close]
BLAST of mRNA_Ecto-sp13_S_contig652.17327.1 vs. uniprot
Match: B3SCA0_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3SCA0_TRIAD)

HSP 1 Score: 207 bits (527), Expect = 1.610e-60
Identity = 95/161 (59.01%), Postives = 124/161 (77.02%), Query Frame = 1 
Query:    7 EVYRACLDVVPHKSFTFAKIWLMLAKFEVRHKDLQAARKVLGQAIGMCPKEKLFKGYVQLERDLGEIDRCRKVYRRCLEAFPSDCGVWAQFAALEGSVGETERSRAVFELAIRQPVLDMPETLWKAYIDFEVGMGVGPDGEHTGQLFERLLERTQHVKVCV 489
            EVY ACL+++PHK FTFAKIW+MLA FE+R KD  +ARK+LG AIG CPKEKL+K Y++LE  L E DRCR++Y + L+  PS C  W ++A LE  +G+ ER+RA+FELAI QP++DMPE LWK+YIDFE+G     + E+   L+E+LLERTQHVKV +
Sbjct:  389 EVYTACLNLIPHKKFTFAKIWIMLANFEIRQKDATSARKILGNAIGRCPKEKLYKSYIELELQLREFDRCRQLYEKFLQFNPSCCTSWVKYAELETILGDVERARAIFELAINQPIMDMPEVLWKSYIDFEIGQ---EEYENARSLYEKLLERTQHVKVWI 546
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig652.17327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLC4_ECTSI3.600e-8183.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1B0FNJ0_GLOMM4.780e-6560.87Uncharacterized protein n=1 Tax=Glossina morsitans... [more]
A0A2R5GAY3_9STRA5.560e-6261.25Pre-mRNA-splicing factor clf1 n=1 Tax=Hondaea ferm... [more]
A0A834FKI2_ORYME1.440e-6161.49Crooked neck-like protein 1 n=3 Tax=Ovalentaria Ta... [more]
A0A1B0FPF4_GLOMM1.480e-6160.87Uncharacterized protein n=9 Tax=Glossina TaxID=739... [more]
A0A3B3DWB2_ORYME7.080e-6161.49Crooked neck pre-mRNA splicing factor 1 n=1 Tax=Or... [more]
A0A7S2FY15_9STRA9.320e-6155.37Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A3S2LKX8_ORYJA1.340e-6060.87Uncharacterized protein n=1 Tax=Oryzias javanicus ... [more]
A0A3B3IGK4_ORYLA1.360e-6060.87Crooked neck pre-mRNA splicing factor 1 n=8 Tax=Or... [more]
B3SCA0_TRIAD1.610e-6059.01Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig652contigEcto-sp13_S_contig652:20885..22648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score267.3
Seed ortholog evalue4.7e-69
Seed eggNOG ortholog2880.D8LLC4
Preferred nameCRNKL1
Model size489
KEGG koko:K12869
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0071007,GO:0071010,GO:0071011,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons4
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsKOG1915@1,KOG1915@2759
Cds size489
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463899.593116-CDS-Ecto-sp13_S_contig652:20884..209401681463899.593116-CDS-Ecto-sp13_S_contig652:20884..20940Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig652 20885..20940 -
1681463899.613259-CDS-Ecto-sp13_S_contig652:21566..217651681463899.613259-CDS-Ecto-sp13_S_contig652:21566..21765Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig652 21567..21765 -
1681463899.6240506-CDS-Ecto-sp13_S_contig652:22067..221661681463899.6240506-CDS-Ecto-sp13_S_contig652:22067..22166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig652 22068..22166 -
1681463899.6352925-CDS-Ecto-sp13_S_contig652:22513..226481681463899.6352925-CDS-Ecto-sp13_S_contig652:22513..22648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig652 22514..22648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig652.17327.1prot_Ecto-sp13_S_contig652.17327.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig652 20885..22648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig652.17327.1

>prot_Ecto-sp13_S_contig652.17327.1 ID=prot_Ecto-sp13_S_contig652.17327.1|Name=mRNA_Ecto-sp13_S_contig652.17327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
RSEVYRACLDVVPHKSFTFAKIWLMLAKFEVRHKDLQAARKVLGQAIGMC
PKEKLFKGYVQLERDLGEIDRCRKVYRRCLEAFPSDCGVWAQFAALEGSV
GETERSRAVFELAIRQPVLDMPETLWKAYIDFEVGMGVGPDGEHTGQLFE
RLLERTQHVKVCV
back to top

mRNA from alignment at Ecto-sp13_S_contig652:20885..22648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig652.17327.1 ID=mRNA_Ecto-sp13_S_contig652.17327.1|Name=mRNA_Ecto-sp13_S_contig652.17327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1764bp|location=Sequence derived from alignment at Ecto-sp13_S_contig652:20885..22648- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAGCGAGGTGTACCGCGCGTGCCTAGATGTTGTACCGCACAAGTCCTT
CACCTTCGCCAAGATCTGGCTCATGCTGGCCAAGTTCGAGGTGCGCCACA
AGGACCTGCAGGCTGCGAGGAAGGTGCTCGGACAGGTGAGAAAAATCTCG
TTTTTTTCTCCGATTTAGTACCTTATTTTGTTTTGCTGTCGCTTCCGGCT
GTGTTTCCTCCTCACCTCCCACCCCCACCCCCACCCCCGCTGCTTATCGT
CGAGCCCCTCACTCTGTCTCGTCCTCAAGCGCGTAGCGCAGCAGCGGCGC
TTGCCTCTCACGGCCGTGTTTTGGTAGGATTCATCCATCCCCACCATTTT
CGATAGACTTGTGGACTGCGCGCTATCGATTGCTGCACAAGATGTTACAT
CCACGATTCGTCCGGGCCGATGTGTCCGCTTGAGACGCCATAACCGCCCC
CCCTCGCTCGCGCCATCTATTTGTCGTCGTAGGCAATCGGCATGTGCCCG
AAGGAGAAGCTGTTCAAGGGATACGTGCAGCTTGAGAGGGATTTGGGAGA
GATCGACCGCTGCCGCAAGGTCTACAGGCGAGTGTTGTGTTAATTGTGTG
CGTGTACAGCAGCGTGGCGTTTTCTCGAAGCTTTGTCGGTTGTGTGTCCT
TAGGTCGACTTGCTCGCCCCGAGACACTTGACACTGTAGAGGCAAAGCAG
GAGTTGCTTTCTCTTCTAGCCTTTTCGCCTCGTTCCTCCATGTTGTTGTC
TTCCCGGTATTCTGTGCCCACCGACTGGCGTGGATTGCCAATCATGGTCG
TCACGGGTCTTCATCCTATCTTCTACTGTCTTGACTCTCTTTCGTTGCTT
TATTTGCCGGCTTTATTTTTTTCGTTCAGCAAGTGCCTGGAGGCGTTTCC
AAGCGACTGCGGGGTGTGGGCGCAGTTCGCGGCACTGGAAGGGTCTGTCG
GAGAGACGGAGCGGTCGCGCGCCGTGTTCGAGCTGGCCATCCGCCAGCCC
GTGTTGGACATGCCCGAAACTCTCTGGAAAGCCTACATTGACTTCGAGGT
GGGAATGGGGGTGGGGCCGGATGGAGAACATAGTGTTTTTTGTGTAGGTG
CTTTGTGGTCGGTTGATGTATGCATCGCCCTGTCGGGACCTACGGTGCAA
ACTAGTTATTTGGGAGGGCGCGGGGTGCACGGGAGAGGGTAGTTGGGTGC
GGCAAGAAGGAAGAGGTGCGGAAGTACCAGCGTCGTCGTGATGTGACACT
AGACGTCCTGCCACCGACGTTCCGTCAGTTTTTCGTTTCGCACCGCCGAG
AGTAGTGCCACGCAGCCCAGTCACGGTGGTCTGTGGTTTTGCAGAGAGCC
ATGCTCGAACGGGGGGGGAGGGTGAGGGGGGTTCTCTGTGTGGTACCCCT
GCCACGTGGTGGGTGATTGGCTGGCGAATTGTGCCTACGGTGGAGGTCGA
CGCGTGAATTCCCTGCACCTCTCTCCTCTTTCTCCCGCTCTGCACCCGTC
CCTCTCCTGATGAGTGCTTTCGTTTTCGCCGGAAACTGCGGTGTTGCGTA
CTTCAGCAAAGCAACACGTTTCGCCTTGTGTGGTCACACGTGTTTTTTTT
CCCTTCTCTCCACTTCAATTTTGGGCACGACAACGCGCGCTGTTTGCTGC
TACGGTCTGCTGGAAACACATCCGCGTCCGTAGGCGGAGAACGGCGAGAC
GGAGCGAGCGGGGCAGCTTTTCGAGAGGCTACTGGAGCGCACTCAGCACG
TCAAGGTGTGTGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig652:20885..22648-

>mRNA_Ecto-sp13_S_contig652.17327.1 ID=mRNA_Ecto-sp13_S_contig652.17327.1|Name=mRNA_Ecto-sp13_S_contig652.17327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig652:20885..22648- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAGCGAGGTGTACCGCGCGTGCCTAGATGTTGTACCGCACAAGTCCTT
CACCTTCGCCAAGATCTGGCTCATGCTGGCCAAGTTCGAGGTGCGCCACA
AGGACCTGCAGGCTGCGAGGAAGGTGCTCGGACAGGCAATCGGCATGTGC
CCGAAGGAGAAGCTGTTCAAGGGATACGTGCAGCTTGAGAGGGATTTGGG
AGAGATCGACCGCTGCCGCAAGGTCTACAGGCGATGCCTGGAGGCGTTTC
CAAGCGACTGCGGGGTGTGGGCGCAGTTCGCGGCACTGGAAGGGTCTGTC
GGAGAGACGGAGCGGTCGCGCGCCGTGTTCGAGCTGGCCATCCGCCAGCC
CGTGTTGGACATGCCCGAAACTCTCTGGAAAGCCTACATTGACTTCGAGG
TGGGAATGGGGGTGGGGCCGGATGGAGAACATACGGGGCAGCTTTTCGAG
AGGCTACTGGAGCGCACTCAGCACGTCAAGGTGTGTGTA
back to top