mRNA_Ecto-sp13_S_contig6516.17318.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6516.17318.1
Unique NamemRNA_Ecto-sp13_S_contig6516.17318.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6516.17318.1 vs. uniprot
Match: D7G9C3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C3_ECTSI)

HSP 1 Score: 791 bits (2043), Expect = 1.140e-272
Identity = 410/501 (81.84%), Postives = 423/501 (84.43%), Query Frame = 1 
Query:    1 ISLSNPLTIPVSFRVETSGPFVINPSPPKKRLNSGKTYFETQVRGGRGGGDAARCQGRRRQQSQLADNNSQATRS------GDGASCAYIGQRTASMMDTQDHNQHQKQHHPECQHRRTKDLISLLPGQNLQLEVVFLPSRASAEMSECLKSSFSPGTEDIPRLVLRTTGELTIAFCTGHVQRIFLRGEVLRPMITVAPATHSFGTIHTERRGNATLFLGNPTFADAEWSLVHIPTPPSKKRLIHNNNAAKATAAGTTPTSNPARAASGAYAKGRHTGKPGGTNGRGSHGRGPAAGLFNPLVVDDPSVFVFDEEGGVLTGVKLPLKSSAACLPEDWNRFENACWPQQRSRVTWGGVTDCCSVYYPKNKISHHECFPGRSVQGSPRRSVRKDTRPMNNVFLVPG--ARPAMPAAVVWRDEPHGQRQVVGPTLNLEIFLTRKEETAEGYRAPRPLEVVFVPKHNVLYRSRFRLTVKGGESAEVVLEGCGTYREDFRPGKLPRV 1479
            ISLSNPLTIPVSFRVETSGPFVIN  PPKKRLNSGKT FETQ+ G        RCQGRRRQQSQLADN++QA RS      GDGASCA  GQRTAS+MDTQDHNQHQKQH PE QHRRT DLISLLPGQN QLEVVFLP RASA+M ECLKSSFSPGTE IPRLVLRTTGELTIAFCTGHVQRIFLRGEVLRPMITVAPATHSFGTIHTERRGNATLFLGNPTFADAEWSLVHIP PP KKRLIH+NNA KATA GTTPTSNPARAASGAY KGRHTGKPGGT+G GS G    AGLFNPLVVDDPSVFVF EEGGVLTGVKLPLKSSAACLPEDWNRFENACWPQQ SRVTWGGV DCCSV+YP  ++    C         P+ S     R + N     G  ARPAM AAVVWR+EPHGQRQVVGPTL LE FLTRKEET EGYRAPRPLEVVF PKHNVLYRSRFRLTVKGGESAEVVLEGCGTYRED RPGKLPRV
Sbjct:  925 ISLSNPLTIPVSFRVETSGPFVINRCPPKKRLNSGKTSFETQLSGXXXXXXXXRCQGRRRQQSQLADNHNQAMRSPKRRRAGDGASCANRGQRTASVMDTQDHNQHQKQHRPERQHRRTNDLISLLPGQNRQLEVVFLPLRASAKMLECLKSSFSPGTEGIPRLVLRTTGELTIAFCTGHVQRIFLRGEVLRPMITVAPATHSFGTIHTERRGNATLFLGNPTFADAEWSLVHIPAPPPKKRLIHSNNADKATATGTTPTSNPARAASGAYVKGRHTGKPGGTDGSGSSGCSSVAGLFNPLVVDDPSVFVFGEEGGVLTGVKLPLKSSAACLPEDWNRFENACWPQQPSRVTWGGVIDCCSVHYPAQELGRRSC-QNHPYGPPPQGSFHSQRRELPNTLSPAGTGARPAMSAAVVWRNEPHGQRQVVGPTLKLETFLTRKEETTEGYRAPRPLEVVFAPKHNVLYRSRFRLTVKGGESAEVVLEGCGTYREDSRPGKLPRV 1424
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BLAST of mRNA_Ecto-sp13_S_contig6516.17318.1 vs. uniprot
Match: A0A7S2V4H4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4H4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.050e-17
Identity = 62/186 (33.33%), Postives = 85/186 (45.70%), Query Frame = 1 
Query:  484 TTGELTIAFCTGHVQRIFLRGEVLRPMITVAPATHSFGTIHTERRGNATLFLGNPTFADAEWSLVHIPTPPSKKRLIHNNNAAKATAAGTTPTSNPARAASGAYAKGRHTGKPGGTNGRGSHGRGPAAGLFNPLVVDDPSVFVFDEEGGVLTGVKLPLKSSAACLPEDWNRFENACWPQQRSRVTW 1041
            T G LT+ F TGH Q + L G +LRPMI  +P  + FG +         + L NPT  +A WSL H+ +  S K +  +     +   G      P+ A   A A+                    A     P   DDPSVF F +E GVL+G  +PLK++  CLP D NR  +A + Q  + V W
Sbjct:    1 TKGTLTVQFSTGHQQTLQLVGNLLRPMIVASPPKYYFGVVRVGAVQKIDIALSNPTEVEAHWSLSHVRSLTSGKGMRASRERPVSKLGG-----KPSAALRAALAE------------------EDAIIEAPPSSHDDPSVFQFSQEEGVLSGPTMPLKATGVCLPTDMNRTTDAVFNQTITTVKW 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6516.17318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9C3_ECTSI1.140e-27281.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V4H4_9STRA1.050e-1733.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6516contigEcto-sp13_S_contig6516:2538..5808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score794.3
Seed ortholog evalue3.3e-227
Seed eggNOG ortholog2880.D7G9C3
Preferred nameDLEC1
Model size1482
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008285,GO:0042127,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0065007
Exons7
EggNOG free text desc.negative regulation of cell proliferation
EggNOG OGs28IDE@1,2QQQ5@2759
Cds size1482
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6516.17318.1prot_Ecto-sp13_S_contig6516.17318.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6516 2538..5808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.6353786-CDS-Ecto-sp13_S_contig6516:2537..29961681463898.6353786-CDS-Ecto-sp13_S_contig6516:2537..2996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6516 2538..2996 +
1681463898.6499603-CDS-Ecto-sp13_S_contig6516:3385..34751681463898.6499603-CDS-Ecto-sp13_S_contig6516:3385..3475Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6516 3386..3475 +
1681463898.6676555-CDS-Ecto-sp13_S_contig6516:3736..41891681463898.6676555-CDS-Ecto-sp13_S_contig6516:3736..4189Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6516 3737..4189 +
1681463898.6851292-CDS-Ecto-sp13_S_contig6516:4581..46561681463898.6851292-CDS-Ecto-sp13_S_contig6516:4581..4656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6516 4582..4656 +
1681463898.6969697-CDS-Ecto-sp13_S_contig6516:4996..50811681463898.6969697-CDS-Ecto-sp13_S_contig6516:4996..5081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6516 4997..5081 +
1681463898.7068443-CDS-Ecto-sp13_S_contig6516:5257..54331681463898.7068443-CDS-Ecto-sp13_S_contig6516:5257..5433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6516 5258..5433 +
1681463898.7195868-CDS-Ecto-sp13_S_contig6516:5664..58081681463898.7195868-CDS-Ecto-sp13_S_contig6516:5664..5808Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6516 5665..5808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6516.17318.1

>prot_Ecto-sp13_S_contig6516.17318.1 ID=prot_Ecto-sp13_S_contig6516.17318.1|Name=mRNA_Ecto-sp13_S_contig6516.17318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=494bp
ISLSNPLTIPVSFRVETSGPFVINPSPPKKRLNSGKTYFETQVRGGRGGG
DAARCQGRRRQQSQLADNNSQATRSGDGASCAYIGQRTASMMDTQDHNQH
QKQHHPECQHRRTKDLISLLPGQNLQLEVVFLPSRASAEMSECLKSSFSP
GTEDIPRLVLRTTGELTIAFCTGHVQRIFLRGEVLRPMITVAPATHSFGT
IHTERRGNATLFLGNPTFADAEWSLVHIPTPPSKKRLIHNNNAAKATAAG
TTPTSNPARAASGAYAKGRHTGKPGGTNGRGSHGRGPAAGLFNPLVVDDP
SVFVFDEEGGVLTGVKLPLKSSAACLPEDWNRFENACWPQQRSRVTWGGV
TDCCSVYYPKNKISHHECFPGRSVQGSPRRSVRKDTRPMNNVFLVPGARP
AMPAAVVWRDEPHGQRQVVGPTLNLEIFLTRKEETAEGYRAPRPLEVVFV
PKHNVLYRSRFRLTVKGGESAEVVLEGCGTYREDFRPGKLPRV*
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mRNA from alignment at Ecto-sp13_S_contig6516:2538..5808+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6516.17318.1 ID=mRNA_Ecto-sp13_S_contig6516.17318.1|Name=mRNA_Ecto-sp13_S_contig6516.17318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3271bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6516:2538..5808+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATAAGTCTGAGCAACCCGCTCACGATACCGGTGTCCTTTCGAGTGGAAAC
GAGCGGCCCGTTCGTCATCAACCCCTCCCCCCCCAAGAAGCGCCTCAACA
GCGGCAAAACATACTTCGAAACGCAAGTCAGGGGCGGTAGAGGCGGCGGC
GACGCCGCCAGATGCCAGGGAAGACGACGACAACAGTCACAACTCGCCGA
CAACAATAGCCAAGCGACGAGATCCGGCGATGGCGCTAGCTGCGCGTACA
TAGGCCAAAGAACGGCCTCGATGATGGACACGCAAGATCACAACCAACAC
CAAAAGCAGCACCACCCAGAGTGCCAGCATCGGCGAACTAAGGATCTCAT
TTCGCTGCTGCCGGGGCAGAACCTCCAGCTGGAGGTGGTGTTTTTGCCTT
CGAGGGCGTCGGCGGAGATGTCGGAATGCCTCAAATCGTCTTTTTCTCCG
GGCACAGAGGTAATAGTCCGGCACTAAACGCATTCGTCAGGGCCCCAGTG
TCGTTCGTGTTGATGACGTGAATAGTTGGCTCTGCGTCCCCTTCTTATTG
CAGTCGTCGTTGCCAGTGTTGTGATTCCGCAAGGTTACATCGATCCCCGT
TATCAGAAGCAACTTATCAGGGAACTATCAGAATCGCATTCCCTGAAGTA
CTTTAAGAGCCGGCGTATCCGGAATTCCAAGTTCATGAAGCTAGCAAACG
CCAAGCTTCCTCCTGCAGAATTCTGTCGCAAGGCTGTGGCTTGGTATGTG
CCGGGTGCACTTTCAGCCAAGGTTGCTGGGAAGCTCTCCGTCACCCAAAC
CCTCTGATTCCCATTTCGACGTGCCTATTCCTCGGGTTACTTTTCAAGGA
CATCCCACGGCTGGTGCTAAGAACGACGGGTGAGCTTACCATCGCATTCT
GCACTGGACACGTGCAGAGGATCTTTCTGAGGGGCGAAGTGAGTACGACC
TCCGACATGTTCCGATTCAACGCGGAAGAAGAATTGCGGCAGTGCTGAAT
ACCGCGAAATTCCGTGCTCTGTGCCACTTCATAGAAAACATCATGAACTT
CGTCAAAAACAATGGACAAACGGAACCACACGTTGCCGAAAACTGCGCAG
GATATCGTGAAAATTTTTCCTGTTGGGCACGATACGGCTACGACGTTGAC
CAGGTATTGCGTCGTCCTCTATTCCTTATTCTTCATTTTTCTTGCCAAGG
TATTGCGACCGATGATCACCGTGGCACCAGCGACGCACTCGTTCGGGACC
ATCCACACCGAAAGAAGGGGAAACGCCACCCTATTCCTAGGAAATCCCAC
CTTCGCCGACGCAGAGTGGTCGTTGGTCCACATCCCCACCCCCCCCTCCA
AAAAGCGCCTTATCCATAACAACAACGCCGCCAAGGCTACCGCCGCCGGA
ACCACACCAACAAGCAACCCTGCGAGGGCAGCATCGGGGGCTTACGCCAA
AGGGAGGCACACCGGGAAGCCGGGGGGTACGAACGGGAGAGGAAGCCACG
GCCGCGGTCCGGCAGCGGGGCTATTCAATCCGTTGGTGGTTGACGACCCT
TCCGTGTTCGTGTTCGACGAGGAGGGAGGGGTCCTGACAGGAGTCAAGCT
GCCGCTGAAGTCCTCGGCGGCGTGCCTGCCCGAGGACTGGAACCGCTTCG
AAGTACGCGGAAAGTCCCAGGCCATGAGGGCTCGAATGTCTCTATTTCAC
TGGAGCACCCTAAAAAAAAATGCTGTGACTCTCTCGCCCACCCGAAAATA
CCTCTTGGTAACTGAGCCAAAGCGAGATAGGCGAGCTGGCGCGGTTGACA
GCGTTTGATGCAAGGACGTACCATTTACGAAACGGCGTTCATTTTTTCCA
GCCGTCGTCCGGGAAACTCTCGATCCCTGAGGACTTGTCGACAGATGGAA
GCCATACACCATAGCACACCCTACATCTCTCTCGCTCCGTCACAGTTTGG
CGTTCTCCTTTTCCTCTGCTTCTGATACGCTTGACGCTCTCCGTTGTTAA
GTCGTGCACTCATGTCCTCTCCTCCCTCGCTCACCCGCCTGCAGAACGCA
TGCTGGCCACAACAGCGTTCACGGGTCACCTGGGGAGGCGTGACCGACTG
CTGCTCCGTTTACTACCCGGTTCAAGAACCGGGCCTTCATCCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
GGCAAGGAGAAGAACAAAATTTCACACCATGAATGTTTCCCTGGCAGATC
TGTTCAAGGTTCCCCTCGCAGATCCGTACGCAAGGATACGAGGCGTTCAG
GCATCGAGCTTGCGCGTGAAAAGCAAGTTTCCTACGTTTTCTGGCAAGTA
TTTTGCGTAACATGTCAACGTCCTGTGCAAAGCACCTTGTACGACTCCAA
TGGAACATTCGGTCCAGCGCCTCGGAGTAATCCATAAGTTCCGGATACAA
GCTTATTCTTCGCAATTCAGCGATGAATAATGTTTTCCTTGTTCCAGGGG
CACGTCCAGCTATGCCTGCCGCTGTCGTCTGGCGAGATGAACCGCACGGG
CAGCGCCAGGTGGTCGGGCCCACACTTAATCTCGAAATCTTCCTCACACG
AAAGGAGGAAACTGCGGAGGGGTACAGAGCACCGAGACCACTAGAGGTGG
GGATGTGTACGATGCACCACGATATTTTAAAAGAATCACGATCGCCATCA
ACGTTGACTGCTTCTATGCACCACCATTGCAGTCATGTACGTCTTAGTAC
CAAGACAATCGGGAGCATGTGGTTTGGAGGCTGAAACAAATTCTTCCATT
ATTTGCTGACCTGTCCGCCTCCTCTTCGCCTCTCTGGTGCCGCATCAAAC
CCAAACTTTTTTCGCATTGCGTTTCAGGTTGTATTTGTGCCTAAGCACAA
TGTCTTGTACCGCAGCCGCTTCCGGCTTACTGTAAAAGGGGGTGAAAGTG
CAGAGGTCGTCCTCGAGGGATGCGGGACCTACAGGGAAGATTTTAGGCCC
GGGAAGTTACCCCGAGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6516:2538..5808+

>mRNA_Ecto-sp13_S_contig6516.17318.1 ID=mRNA_Ecto-sp13_S_contig6516.17318.1|Name=mRNA_Ecto-sp13_S_contig6516.17318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1482bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6516:2538..5808+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATAAGTCTGAGCAACCCGCTCACGATACCGGTGTCCTTTCGAGTGGAAAC
GAGCGGCCCGTTCGTCATCAACCCCTCCCCCCCCAAGAAGCGCCTCAACA
GCGGCAAAACATACTTCGAAACGCAAGTCAGGGGCGGTAGAGGCGGCGGC
GACGCCGCCAGATGCCAGGGAAGACGACGACAACAGTCACAACTCGCCGA
CAACAATAGCCAAGCGACGAGATCCGGCGATGGCGCTAGCTGCGCGTACA
TAGGCCAAAGAACGGCCTCGATGATGGACACGCAAGATCACAACCAACAC
CAAAAGCAGCACCACCCAGAGTGCCAGCATCGGCGAACTAAGGATCTCAT
TTCGCTGCTGCCGGGGCAGAACCTCCAGCTGGAGGTGGTGTTTTTGCCTT
CGAGGGCGTCGGCGGAGATGTCGGAATGCCTCAAATCGTCTTTTTCTCCG
GGCACAGAGGACATCCCACGGCTGGTGCTAAGAACGACGGGTGAGCTTAC
CATCGCATTCTGCACTGGACACGTGCAGAGGATCTTTCTGAGGGGCGAAG
TATTGCGACCGATGATCACCGTGGCACCAGCGACGCACTCGTTCGGGACC
ATCCACACCGAAAGAAGGGGAAACGCCACCCTATTCCTAGGAAATCCCAC
CTTCGCCGACGCAGAGTGGTCGTTGGTCCACATCCCCACCCCCCCCTCCA
AAAAGCGCCTTATCCATAACAACAACGCCGCCAAGGCTACCGCCGCCGGA
ACCACACCAACAAGCAACCCTGCGAGGGCAGCATCGGGGGCTTACGCCAA
AGGGAGGCACACCGGGAAGCCGGGGGGTACGAACGGGAGAGGAAGCCACG
GCCGCGGTCCGGCAGCGGGGCTATTCAATCCGTTGGTGGTTGACGACCCT
TCCGTGTTCGTGTTCGACGAGGAGGGAGGGGTCCTGACAGGAGTCAAGCT
GCCGCTGAAGTCCTCGGCGGCGTGCCTGCCCGAGGACTGGAACCGCTTCG
AAAACGCATGCTGGCCACAACAGCGTTCACGGGTCACCTGGGGAGGCGTG
ACCGACTGCTGCTCCGTTTACTACCCGAAGAACAAAATTTCACACCATGA
ATGTTTCCCTGGCAGATCTGTTCAAGGTTCCCCTCGCAGATCCGTACGCA
AGGATACGAGGCCGATGAATAATGTTTTCCTTGTTCCAGGGGCACGTCCA
GCTATGCCTGCCGCTGTCGTCTGGCGAGATGAACCGCACGGGCAGCGCCA
GGTGGTCGGGCCCACACTTAATCTCGAAATCTTCCTCACACGAAAGGAGG
AAACTGCGGAGGGGTACAGAGCACCGAGACCACTAGAGGTTGTATTTGTG
CCTAAGCACAATGTCTTGTACCGCAGCCGCTTCCGGCTTACTGTAAAAGG
GGGTGAAAGTGCAGAGGTCGTCCTCGAGGGATGCGGGACCTACAGGGAAG
ATTTTAGGCCCGGGAAGTTACCCCGAGTGTGA
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